LOC110522167 (LOC106573363)


Basic Information

Item Value
gene id LOC110522167
gene name LOC106573363
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36290706 ~ 36322277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600332.2
ACAATTCTCAcagactcactcacacacatctgCGTTTGTATGGTTTACCCTTGGGAATAAGAGAGCACTCCAAACATCATTCATATTCATTAGAGGCCTCAAGTGGTTCTTTATGTACTCctgccctccatccctcccctctttcGCTCCCTCCTTTCCCAATTGTTCATCCTGGAAACTGCTCCTCTCGTCTTCTCTCAGCTCACAAAGGCTCACTTCTTCTTTggcccactctcctctcctcctgtctctggcTCCtcatctttttctctcttctgtcttttctctcACCTGGAACCTGGGCTTGAGAGCTGAAGGTGTGGCTCCTCTCACTGTGTTAGCTTAGCCAGCCTTTAATCCCTGAACCTTCTCATCAAACACGGTCAGTTCACGGTCGAGCACGATCAGTCCACGGTTAAATACAGTCTTTCTGCGTGTGGTGGAAGGTGTTCACATAGTGAGGTGAACCTGACAACATGAAGAAAGTGTACAGCATGTTCAACCTGAACAAAACCAAGGAAGAGGAGGCAGTTCAGGCCATCTGTATCAAGCAAATCCAGTTTGCTGATCAGAAGCAGGATTTTAACCAACGTCTTAGTAAGACCAGTCGTCGCTCCCGTTCTTTCTCCCAGTCCTCCACAGATAACTACaactcagACAGTTCAGAGGATGCGACGTCTCCTAGAATCCGGCAGCAGAGGAGCTCTAAGGGACATCAAGACTTCTGCGTCAAGAACATCAGACAGGCCGGCCTCGGACGCAGGGAGATAACGATCGCTGAGCAAGAGATGCCAGCTCTGATGTCcctgagaaagagagcagagggagagaagccACTGGCTGGAGCTAAAGTAGTGGGCTGCACTCACATCACCGCTCACACAGCCGTGTTGATGGAGACTCTGTCTGCGTTGGGGGCTCAGTGTCGCTGGGCAGCCTGTAACATCTACTCCACCCAGAACGCTGCAGCTGCAGCTCTGGCTGAGgaaggcttcCCTGTGTTTGCGTGGAAGGGGGAGTCGGAGGATGACTTCTGGTGGTGTATTGACCACTGTGTCAGCCTGGAGGCCTGGCAGCCCAATATGATCCTGGATGATGGGGGAGACCTGACCCACTGGATCGATAAGAAATACCCCAGCATGTTCAAGATGATCAAGGGTATCGTGGAGGAGAGCGTCACAGGCGTTCACAGGCTGTACCAGCTGTCCAAGGCAGGGAGGCTGTGTGTTCCTGCTATGAACGTCAATGACTCAGTCACCAAACAGATGTTTGACAACCTCTACTGCTGCAGGGAGTCCATACTGGATGGGTTGAAACGGTTGACAGATGTGATGTTTGGGGGAAAGCAGGTTGTGGTGTGTGGTTATGGAGAGGTTGGTAAAGGTTGCTCTGCCGCTCTGAAGGCCATGGGCTCAATAGTGTACATCACAGAGGTCGACCCCATATGTGCCCTGCAGGCCTGCATGGACTGCTTCAGACTGGTCAAGCTCAATGACGTCATCAGACAGGTGGACATGGTCATCACCTGCACGGGCAACAAGAACGTGGTGGGAAGAGATTATCTAGACAGAATGAAGAACGGCTGCATCGTCTGTAACATGGGTCACTCCAACACTGAGATAGACGTgGCGAGTCTGCGGAGCCCAGAGTTGACCTGGGAGAGAGTGAGGTCACAGGTGGACCATGTCATCTGGCCAGATGGCAAGAGAATTATCTTACTGGCTGAGGGTCATCTGTTGAATCTGAGCTGCTCCACGGTACCCTCGTTCATTCTCTCCATCACCGCCACcacacagGCGCTGGCTCTGATTGAGCTGTACAATGCCCCAGAGGGACGATACAATAAAGACGTCTACCTCCTGCCAAAGAAGATGGACGAGTTTGTGGCCGGACTCCACCTGCCAACGTTTGACGCCCACCTCACAGAGCTGACTGATGAGCAGGCCAAATACCTGGGCCTCACCAAGACTGGACCCTTCAAAACAAACTACTACAGGTACTAATCCATGGAAGTGAAGACCAAAGATACACCAGAGCACCCCAAAGACATGTGGCTCAGAGGAAGCGAGGACCAGGGAGACCTGAATCAGATTTGTGTATGTGGGGCAACTGTTGCCCAGCGCTGAGCTGTAACACCCCAAACATGACGGTCAGactgacctttaacccctgacccctgctgAGCCATCTGACCCATAGAGATAAATAGATAACTCTAGTGCCCAAAAGCCTGGGTTTGGAGGAGGTGTATGTCAACATGTAATAGAGAAACACAGATTATCTACTTTTTCATAGACTTACTTTCAGTTACAAATCTTCTCAAAAGATACAGTATCTAAACAATGTTTCAACTTTCTGAATGTAAACAAAAGCAGATAAGGAATAACCAAAAGGTAAAAGATTAATAAAATGTTACATTTGA
>XM_021600322.2
CACAATTCTCAcagactcactcacacacatctgCGTTTGTATGGTTTACCCTTGGGAATAAGAGAGCACTCCAAACATCATTCATATTCATTAGAGGCCTCAAGTGGTTCTTTATGTACTCctgccctccatccctcccctctttcGCTCCCTCCTTTCCCAATTGTTCATCCTGGAAACTGCTCCTCTCGTCTTCTCTCAGCTCACAAAGGCTCACTTCTTCTTTggcccactctcctctcctcctgtctctggcTCCtcatctttttctctcttctgtcttttctctcACCTGGAACCTGGGCTTGAGAGCTGAAGGTGTGGCTCCTCTCACTGTGTTAGCTTAGCCAGCCTTTAATCCCTGAACCTTCTCATCAAACACGGTCAGTTCACGGTCGAGCACGATCAGTCCACGGTTAAATACAGTCTTTCTGCGTGTGGTGGAAGGTGTTCACATAGTGAGGTGAACCTGACAACATGAAGAAAGTGTACAGCATGTTCAACCTGAACAAAACCAAGGAAGAGGAGGCAGTTCAGGCCATCTGTATCAAGCAAATCCAGTTTGCTGATCAGAAGCAGGATTTTAACCAACGTCTTAGTAAGACCAGTCGTCGCTCCCGTTCTTTCTCCCAGTCCTCCACAGATAACTACaactcagCTGCGTCGTACACAGACAGTTCAGAGGATGCGACGTCTCCTAGAATCCGGCAGCAGAGGAGCTCTAAGGGACATCAAGACTTCTGCGTCAAGAACATCAGACAGGCCGGCCTCGGACGCAGGGAGATAACGATCGCTGAGCAAGAGATGCCAGCTCTGATGTCcctgagaaagagagcagagggagagaagccACTGGCTGGAGCTAAAGTAGTGGGCTGCACTCACATCACCGCTCACACAGCCGTGTTGATGGAGACTCTGTCTGCGTTGGGGGCTCAGTGTCGCTGGGCAGCCTGTAACATCTACTCCACCCAGAACGCTGCAGCTGCAGCTCTGGCTGAGgaaggcttcCCTGTGTTTGCGTGGAAGGGGGAGTCGGAGGATGACTTCTGGTGGTGTATTGACCACTGTGTCAGCCTGGAGGCCTGGCAGCCCAATATGATCCTGGATGATGGGGGAGACCTGACCCACTGGATCGATAAGAAATACCCCAGCATGTTCAAGATGATCAAGGGTATCGTGGAGGAGAGCGTCACAGGCGTTCACAGGCTGTACCAGCTGTCCAAGGCAGGGAGGCTGTGTGTTCCTGCTATGAACGTCAATGACTCAGTCACCAAACAGATGTTTGACAACCTCTACTGCTGCAGGGAGTCCATACTGGATGGGTTGAAACGGTTGACAGATGTGATGTTTGGGGGAAAGCAGGTTGTGGTGTGTGGTTATGGAGAGGTTGGTAAAGGTTGCTCTGCCGCTCTGAAGGCCATGGGCTCAATAGTGTACATCACAGAGGTCGACCCCATATGTGCCCTGCAGGCCTGCATGGACTGCTTCAGACTGGTCAAGCTCAATGACGTCATCAGACAGGTGGACATGGTCATCACCTGCACGGGCAACAAGAACGTGGTGGGAAGAGATTATCTAGACAGAATGAAGAACGGCTGCATCGTCTGTAACATGGGTCACTCCAACACTGAGATAGACGTgGCGAGTCTGCGGAGCCCAGAGTTGACCTGGGAGAGAGTGAGGTCACAGGTGGACCATGTCATCTGGCCAGATGGCAAGAGAATTATCTTACTGGCTGAGGGTCATCTGTTGAATCTGAGCTGCTCCACGGTACCCTCGTTCATTCTCTCCATCACCGCCACcacacagGCGCTGGCTCTGATTGAGCTGTACAATGCCCCAGAGGGACGATACAATAAAGACGTCTACCTCCTGCCAAAGAAGATGGACGAGTTTGTGGCCGGACTCCACCTGCCAACGTTTGACGCCCACCTCACAGAGCTGACTGATGAGCAGGCCAAATACCTGGGCCTCACCAAGACTGGACCCTTCAAAACAAACTACTACAGGTACTAATCCATGGAAGTGAAGACCAAAGATACACCAGAGCACCCCAAAGACATGTGGCTCAGAGGAAGCGAGGACCAGGGAGACCTGAATCAGATTTGTGTATGTGGGGCAACTGTTGCCCAGCGCTGAGCTGTAACACCCCAAACATGACGGTCAGactgacctttaacccctgacccctgctgAGCCATCTGACCCATAGAGATAAATAGATAACTCTAGTGCCCAAAAGCCTGGGTTTGGAGGAGGTGTATGTCAACATGTAATAGAGAAACACAGATTATCTACTTTTTCATAGACTTACTTTCAGTTACAAATCTTCTCAAAAGATACAGTATCTAAACAATGTTTCAACTTTCTGAATGTAAACAAAAGCAGATAAGGAATAACCAAAAGGTAAAAGATTAATAAAATGTTACATTTGA
>XM_036976868.1
ACACACAATTCTCAcagactcactcacacacatctgCGTTTGTATGGTTTACCCTTGGGAATAAGAGAGCACTCCAAACATCATTCATATTCATTAGAGGCCTCAAGTGGTTCTTTATGTACTCctgccctccatccctcccctctttcGCTCCCTCCTTTCCCAATTGTTCATCCTGGAAACTGCTCCTCTCGTCTTCTCTCAGCTCACAAAGGCTCACTTCTTCTTTggcccactctcctctcctcctgtctctggcTCCtcatctttttctctcttctgtcttttctctcACCTGGAACCTGGGCTTGAGAGCTGAAGGTGTGGCTCCTCTCACTGTGTTAGCTTAGCCAGCCTTTAATCCCTGAACCTTCTCATCAAACACGGTCAGTTCACGGTCGAGCACGATCAGTCCACGGTTAAATACAGTCTTTCTGCGTGTGGTGGAAGGTGTTCACATAGTGAGGTGAACCTGACAACATGAAGAAAGTGTACAGCATGTTCAACCTGAACAAAACCAAGGAAGAGGAGGCAGTTCAGGCCATCTGTATCAAGCAAATCCAGTTTGCTGATCAGAAGCAGGATTTTAACCAACGTCTTAGTAAGACCAGTCGTCGCTCCCGTTCTTTCTCCCAGTCCTCCACAGATAACTACaactcagCTGCGTCGTACACAGACAGTTCAGAGGATGCGACGTCTCCTAGAATCCGGCAGCAGAGGAGCTCTAAGGGACATCAAGACTTCTGCGTCAAGAACATCAGACAGGCCGGCCTCGGACGCAGGGAGATAACGATCGCTGAGCAAGAGATGCCAGCTCTGATGTCcctgagaaagagagcagagggagagaagccACTGGCTGGAGCTAAAGTAGTGGGCTGCACTCACATCACCGCTCACACAGCCGTGTTGATGGAGACTCTGTCTGCGTTGGGGGCTCAGTGTCGCTGGGCAGCCTGTAACATCTACTCCACCCAGAACGCTGCAGCTGCAGCTCTGGCTGAGgaaggcttcCCTGTGTTTGCGTGGAAGGGGGAGTCGGAGGATGACTTCTGGTGGTGTATTGACCACTGTGTCAGCCTGGAGGCCTGGCAGCCCAATATGATCCTGGATGATGGGGGAGACCTGACCCACTGGATCGATAAGAAATACCCCAGCATGTTCAAGATGATCAAGGGTATCGTGGAGGAGAGCGTCACAGGCGTTCACAGGCTGTACCAGCTGTCCAAGGCAGGGAGGCTGTGTGTTCCTGCTATGAACGTCAATGACTCAGTCACCAAACAGATGTTTGACAACCTCTACTGCTGCAGGGAGTCCATACTGGATGGGTTGAAACGGTTGACAGATGTGATGTTTGGGGGAAAGCAGGTTGTGGTGTGTGGTTATGGAGAGGTTGGTAAAGGTTGCTCTGCCGCTCTGAAGGCCATGGGCTCAATAGTGTACATCACAGAGGTCGACCCCATATGTGCCCTGCAGGCCTGCATGGACTGCTTCAGACTGGTCAAGCTCAATGACGTCATCAGACAGGTGGACATGGTCATCACCTGCACGGGCAACAAGAACGTGGTGGGAAGAGATTATCTAGACAGAATGAAGAACGGCTGCATCGTCTGTAACATGGGTCACTCCAACACTGAGATAGACGTgGCGAGTCTGCGGAGCCCAGAGTTGACCTGGGAGAGAGTGAGGTCACAGGTGGACCATGTCATCTGGCCAGATGGCAAGAGAATTATCTTACTGGCTGAGGCGCTGGCTCTGATTGAGCTGTACAATGCCCCAGAGGGACGATACAATAAAGACGTCTACCTCCTGCCAAAGAAGATGGACGAGTTTGTGGCCGGACTCCACCTGCCAACGTTTGACGCCCACCTCACAGAGCTGACTGATGAGCAGGCCAAATACCTGGGCCTCACCAAGACTGGACCCTTCAAAACAAACTACTACAGGTACTAATCCATGGAAGTGAAGACCAAAGATACACCAGAGCACCCCAAAGACATGTGGCTCAGAGGAAGCGAGGACCAGGGAGACCTGAATCAGATTTGTGTATGTGGGGCAACTGTTGCCCAGCGCTGAGCTGTAACACCCCAAACATGACGGTCAGactgacctttaacccctgacccctgctgAGCCATCTGACCCATAGAGATAAATAGATAACTCTAGTGCCCAAAAGCCTGGGTTTGGAGGAGGTGTATGTCAACATGTAATAGAGAAACACAGATTATCTACTTTTTCATAGACTTACTTTCAGTTACAAATCTTCTCAAAAGATACAGTATCTAAACAATGTTTCAACTTTCTGAATGTAAACAAAAGCAGATAAGGAATAACCAAAAGGTAAAAGATTAATAAAATGTTACATTTGA
>TU43354
GACGAGTTTGTGGCCGGACTCCACCTGCCAACGTTTGACGCCCACCTCACAGAGCTGACTGATGAGCAGGCCAAATACCTGGGCCTCACCAAGACTGGACCCTTCAAAACAAACTACTACAGGTACTAATCCATGGAAGTGAAGACCAAAGATACACCAGAGCACCCCAAAGACATGTGGCTCAGAGGAAGCGAGGACCAGGGAGACCTGAATCAGATTTGTGTATGTGGGGCAACTGTTGCCCAGCGCTGAGCTGTAACACCCCAAACATGACGGTCAGactgacctttaacccctgacccctgctgAGCCATCTGACCCATAGAGATAAATAGATAACTCTAGTGCCCAAAAGCCTGGGTTTGGAGGAGGTGTATGTCAACATGTAATAGAGAAACA

Function

NR:

description
putative adenosylhomocysteinase 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600332.2 False 2422 mRNA 0.50 17 36290706 36322273
XM_021600322.2 False 2438 mRNA 0.50 17 36290706 36322274
XM_036976868.1 False 2372 mRNA 0.50 16 36290706 36322277
TU43354 True 399 lncRNA 0.51 2 36290855 36291393

Neighbor

gene id symbol gene type direction distance location
LOC110522087 NA coding downstream 26600 36261188 ~ 36264106 (-)
LOC110522124 fbxl14 coding downstream 56398 36231487 ~ 36234308 (-)
LOC110522050 LOC106573365 coding downstream 101000 36141051 ~ 36189706 (-)
LOC110522098 LOC106573370 coding downstream 159325 36121670 ~ 36131381 (-)
tmem60 LOC106573373 coding downstream 169717 36119271 ~ 36120989 (-)
LOC110522187 LOC106573361 coding upstream 47814 36370091 ~ 36409064 (-)
LOC100750228 irf-7 coding upstream 217520 36539797 ~ 36550002 (-)
LOC118966750 NA coding upstream 318778 36641055 ~ 36641109 (-)
ldlrad3 LOC106573355 coding upstream 390587 36712864 ~ 36827281 (-)
trim44 LOC106573354 coding upstream 562195 36884472 ~ 36952971 (-)
G38314 NA non-coding downstream 9439 36280348 ~ 36281267 (-)
G38223 NA non-coding downstream 59515 36226702 ~ 36231191 (-)
G38269 NA non-coding downstream 99139 36191163 ~ 36191567 (-)
G38229 NA non-coding downstream 181834 36108398 ~ 36108872 (-)
G38224 NA non-coding downstream 182809 36106604 ~ 36107897 (-)
G38345 NA non-coding upstream 9882 36332159 ~ 36333002 (-)
G38369 NA non-coding upstream 39409 36361686 ~ 36361956 (-)
G38370 NA non-coding upstream 39937 36362214 ~ 36362415 (-)
G38372 NA non-coding upstream 40543 36362820 ~ 36363094 (-)
G38374 NA non-coding upstream 40870 36363147 ~ 36363348 (-)
G38045 LOC106573386 other downstream 568650 35721440 ~ 35722056 (-)
G37976 NA other downstream 707098 35583292 ~ 35583608 (-)
G37907 NA other downstream 849378 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 1012701 35273709 ~ 35278005 (-)
G36196 NA other downstream 1909474 34341562 ~ 34381232 (-)
G38855 NA other upstream 186261 36508538 ~ 36510829 (-)
G40079 NA other upstream 1394263 37716540 ~ 37717033 (-)
G40732 NA other upstream 1803003 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1865211 38187488 ~ 38191736 (-)

Expression


Co-expression Network