XLOC_019737 (zgc:194629)


Basic Information

Item Value
gene id XLOC_019737
gene name zgc:194629
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 33058625 ~ 33090204 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038857
CCGTCACAGTCATTCCTTCATCTGCCAGGCTCATGGTACCGGCTTGTTGCCATGGTAATACTGTCTGGTGAAGCAGTCGGAGAGCCATAGAGTCCTAATTGGCTTCAGTCCTGGTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGTAAACATGAAATGACGGATTATGAACTTTAGagcttgacttaaaaaaaaaatgatcaaagaTTAGAGCAAAGAACAGTCAGCTCTGCTTGTGCTGTCAGAGCTGCATTATTATGTGCTTCATGTTTGTGTTTGAAGTCCTCGattatattgtgtttaatgtgTTGTATATTTCATAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAGtacattgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtacttaatTTTATTGAGGTAATCCTAGGCATTCAGTAgagttaaattacattaaaatatgtaaaaactatttaaatgactACATTTGTAAT
>TCONS_00038858
TTTAGAGATTGTTTCAGGCATTACATTTTGTTCAAAGACTATgaagacagtttttttttccaatcccAGTAACATATACTTGCTATAATAAAACCATAAAGCTGAATTCAAAGATATCAGCTTTCATTTCATGTTGATTTTTCTTGCTCTAAAGATTGATAATGTCTAGATCTCACACTATCCTAGAGTTTCGCTCACTGATGTTATGTCATCAGAAGACATGCAGCTACCCTGAGGGTGAATAAAGAGACAACGACATGAATGGTAGGAGGTAAAAAAAAGAGGCAACGAGCGAGAAGAAGCTAATGCATGGCGTACACTGCACGTGAGTTTCATGCTGATGGTTCCCTAGGCtttaataacacatacacacgcagacacacacacattttcctcTAGCACACCTTGTCCTCAGCAAAGTCTTCATCAGGGTTGTTATATTTATGTTCTCTGAATGGACATCGTGTAGCGAAGTAATCAGACTCGATCAGATGACCAGCCCCCAAGCCGAGGCACAgacagaaaagagagagagaagaatgagagagagagatggaaacGCAGGGAGATGAGAGAAGAGGGAAGGGAGGGAGGTGGATCTCGGAGGTGAGGATTGTGCCTTACTTGACTGAGCTTGTCTTTGTGAGGATACAATTGTTACTGTTTTAACTCTTTGTAAAGGTCTATTTTGTGTGTCGTTTCACAGAAACGTGTTGCTCAATAGTGTGTCTGTCTTCAATGAAGAAACACTGAAATAACAAGTTTCACCAGTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAGtacattgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtacttaatTTTATTGAGGTAATCCTAGGCATTCAGTAgagttaaattacattaaaatatgtaaaaactatttaaatgactACATTTGTAAT
>TCONS_00039670
tttacatagctgaataataagagtttgttacaagtaaacaagtaaatgatgtaCTGTTGTATTGAGGAGGCTGAGGCTTTGTTAGAATGCATATGCTGAAATTTATTAAAGGGCTTACACAGAGACATCAACATGTAAACAGGCAAAGAGTCGGCAACAGTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAG
>TCONS_00039671
gTTAAAAGATAGATcgcatgtgtactgctaggagaagTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAG
>TCONS_00039672
CTTGCATGGGAGCCGGAGAGTGCAAGCCCGAGAGTGGAAACCTTAAAGTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAG
>TCONS_00039673
CTGGGACCTGCTGAATAAAGAATAGTTTCCCAAGTCTTGTTGGAATCATTGCTTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAG
>TCONS_00039674
CCAAGCCGAGGCACAgacagaaaagagagagagaagaatgagagagagagatggaaacGCAGGGAGATGAGAGAAGAGGGAAGGGAGGGAGGTGGATCTCGGAGAAACGTGTTGCTCAATAGTGTGTCTGTCTTCAATGAAGAAACACTGAAATAACAAGTTTCACCAGTAAGCTATCAAGTCAATCTTGATGTTTGGAGGACCTATAAAACTGGGCTGGGATCATgtagagacttttgaagatgaacTGAAACTGCAATCTCATATGGATGCACTCCTGCGCAGACGTCCTAACTTATCAACACTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAG
>TCONS_00039675
AGACAACGACATGAATGGTAGGAGGTAAAAAAAAGAGGCAACGAGCGAGAAGAAGCTAATGCATGGCGTACACTGCACCGAAGTAATCAGACTCGATCAGATGACCAGCCCCCAAGCCGAGGCACAgacagaaaagagagagagaagaatgagagagagagatggaaacGCAGGGAGATGAGAGAAGAGGGAAGGGAGGGAGGTGGATCTCGGAGAAACGTGTTGCTCAATAGTGTGTCTGTCTTCAATGAAGAAACACTGAAATAACAAGTTTCACCAGTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACAG
>TCONS_00039253
agagaagaatgagagagagagatggaaacGCAGGGAGATGAGAGAAGAGGGAAGGGAGGGAGGTGGATCTCGGAGAAACGTGTTGCTCAATAGTGTGTCTGTCTTCAATGAAGAAACACTGAAATAACAAGTTTCACCAGTTTCAGATCACTAACAGCGTTGACTGCATTATATAGAGACACAGACGATTTGCTCCTCGAGTCGAGACATGGAGAGGACAGAGAATAAAGAGTCCACCATCTCCCCACAAAAACAAACAGTGAAAAACAGATCCAAGTCAACTGAAGAAGTGCAGCAAGCCAAAAAGGCCTTTCATACACCACAAAAATCTCTGCCGGCCAAACCAGAGACCGAACAACTAGAGGAGACGGCAGAACTGAGTGCCTCATCACAGGAGTTTAAATGATTGCCGGATTCAAACTTCTGAGCGCTGAGATTTAGAGAGATCGACTGGGATTATGGGTCAAAAACAAGAGGATGATTCAATGTCTTTATTCATGGATTTGTGATTCCGTTTAGCTAGCATAGTAGAAAAGgaataaaataattatgtgtAACTTCTTGACTTTGTATTAGTATTATGTTAGTGAAATAAATGCAGAACTAGATATAACACA

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0008150 biological_process biological_process
GO:0043010 camera-type eye development biological_process
GO:0009584 detection of visible light biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003674 molecular_function molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-133 No description available

Ensembl:

ensembl_id ENSDARG00000117308

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038857 False 898 lncRNA 0.38 4 33058625 33082127
TCONS_00038858 False 1377 lncRNA 0.39 5 33058625 33090204
TCONS_00039670 False 638 lncRNA 0.39 5 33058753 33076654
TCONS_00039671 False 515 lncRNA 0.40 5 33058753 33077324
TCONS_00039672 False 526 lncRNA 0.41 5 33058753 33083254
TCONS_00039673 False 531 lncRNA 0.40 5 33058753 33083687
TCONS_00039674 False 783 lncRNA 0.42 7 33058753 33089702
TCONS_00039675 False 758 lncRNA 0.43 7 33058753 33089957
TCONS_00039253 True 617 lncRNA 0.41 6 33058754 33089673

Neighbor

gene id symbol gene type direction distance location
XLOC_019736 slc34a1b coding downstream 25909 33006650 ~ 33032716 (-)
XLOC_019735 cnot6a coding downstream 277013 32757601 ~ 32781612 (-)
XLOC_019733 adamts2 coding downstream 374055 32508908 ~ 32684570 (-)
XLOC_019734 NA coding downstream 398185 32655957 ~ 32660440 (-)
XLOC_019732 si:dkeyp-72g9.4 coding downstream 571541 32476709 ~ 32487084 (-)
XLOC_019738 CU019662.1 coding upstream 3127 33093331 ~ 33126697 (-)
XLOC_019739 CU019662.2 coding upstream 46744 33136948 ~ 33137083 (-)
XLOC_019740 NA coding upstream 55048 33145252 ~ 33146525 (-)
XLOC_019741 rbm22 coding upstream 121102 33211306 ~ 33229950 (-)
XLOC_019742 NA coding upstream 375071 33465275 ~ 33477963 (-)
XLOC_019727 NA non-coding downstream 780283 32126914 ~ 32278342 (-)
XLOC_019722 CR450753.1 non-coding downstream 1720840 31337670 ~ 31337785 (-)
XLOC_019714 BX936320.1 non-coding downstream 2170251 30886127 ~ 30888374 (-)
XLOC_019712 NA non-coding downstream 2264035 30792655 ~ 30794590 (-)
XLOC_019743 NA non-coding upstream 546958 33637162 ~ 33646880 (-)
XLOC_019755 NA non-coding upstream 2555334 35645538 ~ 35650096 (-)

Expression


Co-expression Network