LOC100750228 (irf-7)


Basic Information

Item Value
gene id LOC100750228
gene name irf-7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36539797 ~ 36550002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600499.2
AAGTCCAACTATATGACATCACGACGCCTATAAAACGTTTCTGCCCGGCATTGAACTGAAAACAACTAGAACACTTACATAGTAGTACACGTCCACAGTAGTACACGTCCACAGTCAAACAGCCGACGCGTCTAAGCATTAAAGATGCAAAGCTGCAAACCTCAGTTCGCTGACTGGCTGATAGAACAGGTGCGGACCGAGCAATACACTGGTTTGTTCTTTATTGACAACAATAAGTTCAGAGTCCCGTGGAAACACAATTCTAGGAAGGATTGCTCCGAGGACGACCGTAAAATATTCAGGGCATGGGCAGTGGTCAGTGGGAAAATCAATGAGCATCCCACTGACAAGGCAAAGTGGAAGACCAACTTCCGCTCTGCACTGAACAGCTTGTGCAGGCGTTTCAAGATGGTGGAAGACCACTCCAAGGACTCAAACGACCCCCATAAAGTCTACCTGGTCATCAATGAGTataaCTATGAGAGCCCGCACATAGAAGAAATCACTCTGGAGAACTATGGCCTTGACTGTGCTCTCATCCCTACAGAAAACACACCCCCAGGCATGGAGCATGATATACTGAACTTTAGCAACCTAACCTTGAACCCCCTAGACCTGAACCAACACACAGAGAATTCTATaccggtacacacacaccacccagtgCCACCAGTCCTAGTACAGCAGCCATACTACCAAGTAAATCCGGATGCCCTGCTCAACCTGCCTGCCGCCCACTCATCCCTCTGGGATTTGGAGATCACCATCTCCTATAGGGGGAGCGAGATGCGAAAGACCCAGGTGTCAGGCCCCAGGGTTCAGCTCCACTACCAGTGTAATGCTCTCGAGCCAAACACCCAGCCCCTCTGCTTCCCCAGCACTGACGGGTTGCCAGACCACAAACAGATTGAATACACCAACTGCATCCTAGGAAGCGTCCAAAGGGGTCTTCTCCTCGAGGTACAAAACACTGGTATCTATGGTTACCGGCAGGACAAGTGCCACGTGTTCTCCAGTACTAGCGACCCCAGAGAGGCACACCCTGAACCCAGGAAGATGCCTCAAAATGAAATGGTACAACTGTTGAGCTTCCAGCAGTACGAAAATGagctgatagCATTTAAGGAGAACAGACGAGGCTCTCCTGACTATACCATCCACATGTGCTTTGGTGAGAAGTTCCCTGACGGAAAACCCCTGGAGAAGAAACTCATCATTGTCAAGGTGGTTCCCCTGATCTGTCGTTACTTCCACGAGGTGGCCCAGGAGGAGGGGGCGTCGTCCCTCCAGAATGACAACATCAGCCTGCAGATCTCCCACCACAACAGCCTGATGGAGCTCATCAATGCCACCTGGCCCGACGGCCCACAGCACGCCATGGGGCAGTACTTCTAGACCACCAATTGTACCACATCACCAGCCCTTATCTAGAACTGGTACCTCACTACTGTATCACTTAATTGAATCTTCCAAAAGGAAAGAAATACTTAGCAAGTGGATATGTAATGCAATTGTGTACGACTCAAACATGTAGATCTTTGAAAGTCAAACAAATGTTGGTGTTAGAACAGGGCTCTCCAAcattgttcctggagagctacagtcctatAGGTTTTCACTCAACCCTAATCTAACACACCAGACTtgaataattagctggttgataagccgactcaggttagttacaactggggttggagcgaaaacctacaggatggtagctctccaggaacagggttggagagccctgtgttAGATTATTCTGATCTATGATTTGTGTCATGCAGTAGTATAGGCTGTCCTTCTCTTGacgatgtgtgtatatatatttaaatatacatCAAATCGCTGTGTGTTCGTAATGTGTTCATGTATCATTTAGTGGTATTTTCTCTTCTACTGAATTCCCTTGTGTCCCTATGGGCCACACTTTAAACCTGTCTAGGTCGCTCAACCCTTCAGTCTGTTCTCTTTTGTATTGAAAAATCTGTTTTATTGTACTGAAAGTGAGCAAACTTCACCCTGGCATTGAAAAGCACTTTGTATAGTATTGCAAAACAAGATCAATAAACTTTGCCTTGTTTCCTTA

Function

NR:

description
interferon regulatory factor 7-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05411 IRF3; interferon regulatory factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600499.2 True 2089 mRNA 0.47 10 36539797 36550002

Neighbor

gene id symbol gene type direction distance location
LOC110522187 LOC106573361 coding downstream 130733 36370091 ~ 36409064 (-)
LOC110522167 LOC106573363 coding downstream 217520 36290706 ~ 36322277 (-)
LOC110522087 NA coding downstream 275691 36261188 ~ 36264106 (-)
LOC110522124 fbxl14 coding downstream 305489 36231487 ~ 36234308 (-)
LOC110522050 LOC106573365 coding downstream 350091 36141051 ~ 36189706 (-)
LOC118966750 NA coding upstream 91053 36641055 ~ 36641109 (-)
ldlrad3 LOC106573355 coding upstream 162862 36712864 ~ 36827281 (-)
trim44 LOC106573354 coding upstream 334470 36884472 ~ 36952971 (-)
LOC110522309 LOC106573353 coding upstream 478883 37028885 ~ 37031653 (-)
LOC110522333 NA coding upstream 662418 37212420 ~ 37248824 (-)
G38875 NA non-coding downstream 37350 36494119 ~ 36502447 (-)
G38881 NA non-coding downstream 40597 36498720 ~ 36499200 (-)
G38374 NA non-coding downstream 176449 36363147 ~ 36363348 (-)
G38372 NA non-coding downstream 176703 36362820 ~ 36363094 (-)
G38370 NA non-coding downstream 177382 36362214 ~ 36362415 (-)
G38917 NA non-coding upstream 25039 36575041 ~ 36576178 (-)
G38992 NA non-coding upstream 154522 36704524 ~ 36710705 (-)
G39030 NA non-coding upstream 212231 36762233 ~ 36789206 (-)
G39158 NA non-coding upstream 420446 36970448 ~ 36970664 (-)
G38855 NA other downstream 28968 36508538 ~ 36510829 (-)
G38045 LOC106573386 other downstream 817741 35721440 ~ 35722056 (-)
G37976 NA other downstream 956189 35583292 ~ 35583608 (-)
G37907 NA other downstream 1098469 35440918 ~ 35441328 (-)
G40079 NA other upstream 1166538 37716540 ~ 37717033 (-)
G40732 NA other upstream 1575278 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1637486 38187488 ~ 38191736 (-)
G41868 NA other upstream 2471803 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 6488726 42852829 ~ 43129052 (-)

Expression


Co-expression Network