ldlrad3 (LOC106573355)


Basic Information

Item Value
gene id ldlrad3
gene name LOC106573355
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36712864 ~ 36827281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600535.2
GACCTTTAGTCTTCTGTAGCAGCCACAAGTCTCCGCCTCTCACACGGCGCTAAACCGATCCCCACCCAGTGATCCCCACTCACTCCGAATCCCCTGCCACCACCCCTCAAGCCCCTACCACCGCCAGCCTCTTCCTCCCCAGCCCTGATTCTGAAAACTCTGTCCCTGTGAGAATCCGGCTCTTCACGCAAGCCATTTTCTAACTTTGTCCCGAATAGAAAAAAGGAGAAAACAACGCGAAAGTGGAGATAGGAGCAAACCGGATAAGTGTTCTATTGCCCCGATTGTTGGCCCGCGGCGGGGTGCAAAAAGGGCAGGCCGAAAAAAGACCATAAGATGTGGATCTGGTACATCTTGCTTAGTTCGGGGACGGGCTCAAGCTCGGTtgAGAGCCAGCTCCTTCCGGGGAACAACTTCACCACAGAGTGCAATATCCCAGGGAACTTCATGTGTGGGGACGGGAAGTGTGTCCCAGGCGGGTGGCAGTGTGACGGACTGCCCGACTGCTTCGACAAGAGCGACGAGAAAGGCTGCCCCAAGATAAAGTCCAAGTGTGCTCCGACGTTTTTCGCCTGTGCCAACGGGATCCACTGTATCATCGGGCGCTTCCGTTGTAACGGCTTCAGTGACTGTCCTGACGGGAGCGACGAGGAGAACTGCACAGGTAACCCGCTGGTGTGCTTGGAGGCCCGCTTCAAGTGTCGTAACGGGCGCTGTGTGGACCGCAGCTTCCTGTGTAATGGACAAGACAACTGTCAGGACAACAGCGACGAGGAACACTGCCTCACCACCGCAGAGGCTCCAGGTCAGGACTTTGTAACCCTGGACTACCGGCTGCGTTACTACCCCAGCATCACCTACGCGGTCATCGGCAGCGCTGTCATCTTCGTCCTGGTGGTGGCGCTGTTGGCCTTGGTCCTGCACCATCAGAGGAAGCGCAGCGTGCTGCTGCCCCGTGGGGTCCGGGGgtcctcccaccaccaccaccaccaccagcccctGCTGCTGTCCCGCCTGGTCATCCTAGACCGGGGACATGTCCACCCGGCTGGCCCTggcctctcccccacctccccttcTGCTGCGGCCCACTACCCTGCAGGTCCCCCAGGGCTACAGCTGCTGTCTGGGGCCCTCTACCCAGCTGGCATGCCCATGGACTCACCACCTTCCTACTCCCAGGCTGTACTGGATGTCAGCCGGCCTCCTTGGTTCGACCTCCCCCCGCCTCCCTACCTCCCAGACGGGGAGGAGCTGCCGTCAGAAGGTGAGCTGCCCCAGTACGAAGCCCCCACAGTGCGCTCCACTCAGCCAAATACATGCCCATCTGAGCCCCCTACACCCAGAACTGTGGCCCCAGGCTTGTCCCGGCCTAGCCTCAGCTCCAGAGAGGAGTCGGACCAGCTGTAGTCCTCTGGTTACTGCATCTACGCAGGACTAGTACCCAGCCTCAGCGCTGTGGATGGCTGAAGAGAGAAGAGCTGTGCGATATGTTAAGGCCCAAAGCACTGTCCTGCCTGCTGTGGGAATGAGAGACAAGGCGCTATTCTACCTATAGCtacaactgactgactgactgactgaggcaCTTGGAATCATTGCTCTTGTACGCTGGTGCCCTCTGCTGGAAATGTATCTACATATCCCTGACTGGGCTTACTACTCATTCAATCAATCATCAGTCAATTGCATTTAATCTGTGGCTATATAGCgctttttacaaattaatttctCACAGTCTGCTTAACAGAAACCAGAGCCTAAACTTCTAAAGACTGAGAAATACTCCCACAGCCTCCCAACACTATTCATCTCCTGTTGGACTGGTGAAGACCAGTTGGGTGGTTGGGCGAAGATCCTTTAGCTTGGATTAAGTTGACTGGATAGATGGTCAACCTGTGTAGTCCAGTCATGCATTAACAATGAAGTAGGAGTCGCACTAACTAACAGTATTTGTGGTACTCATAAGGGGTCAAATGTCACATGGTGTTACAGTGgcagatgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgcatttttttgtgaagaatcaacaaca

Function

NR:

description
low-density lipoprotein receptor class A domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600535.2 True 2117 mRNA 0.55 6 36712864 36827281

Neighbor

gene id symbol gene type direction distance location
LOC118966750 NA coding downstream 71755 36641055 ~ 36641109 (-)
LOC100750228 irf-7 coding downstream 162862 36539797 ~ 36550002 (-)
LOC110522187 LOC106573361 coding downstream 303800 36370091 ~ 36409064 (-)
LOC110522167 LOC106573363 coding downstream 390587 36290706 ~ 36322277 (-)
LOC110522087 NA coding downstream 448758 36261188 ~ 36264106 (-)
trim44 LOC106573354 coding upstream 57191 36884472 ~ 36952971 (-)
LOC110522309 LOC106573353 coding upstream 201604 37028885 ~ 37031653 (-)
LOC110522333 NA coding upstream 385139 37212420 ~ 37248824 (-)
pdhx pdhx coding upstream 460275 37287556 ~ 37347643 (-)
LOC110522348 LOC106573397 coding upstream 553287 37380568 ~ 37397634 (-)
G38992 NA non-coding downstream 2159 36704524 ~ 36710705 (-)
G38917 NA non-coding downstream 136686 36575041 ~ 36576178 (-)
G38875 NA non-coding downstream 210417 36494119 ~ 36502447 (-)
G38881 NA non-coding downstream 213664 36498720 ~ 36499200 (-)
G38374 NA non-coding downstream 349516 36363147 ~ 36363348 (-)
G39158 NA non-coding upstream 143167 36970448 ~ 36970664 (-)
G39194 NA non-coding upstream 172866 37000147 ~ 37000468 (-)
G39217 NA non-coding upstream 190011 37017292 ~ 37017552 (-)
G39231 NA non-coding upstream 198454 37025735 ~ 37026035 (-)
G38855 NA other downstream 202035 36508538 ~ 36510829 (-)
G38045 LOC106573386 other downstream 990808 35721440 ~ 35722056 (-)
G37976 NA other downstream 1129256 35583292 ~ 35583608 (-)
G37907 NA other downstream 1271536 35440918 ~ 35441328 (-)
G40079 NA other upstream 889259 37716540 ~ 37717033 (-)
G40732 NA other upstream 1297999 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1360207 38187488 ~ 38191736 (-)
G41868 NA other upstream 2194524 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 6211447 42852829 ~ 43129052 (-)

Expression


Co-expression Network