LOC110522309 (LOC106573353)


Basic Information

Item Value
gene id LOC110522309
gene name LOC106573353
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37028885 ~ 37031653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600613.2
TGTGGAGCAGAAGCTGCTACACAAATCAAACTCAACCACAAATCAAACTCAACCAGCACCCAGTGGAGATCGGAGAGATGGAGACGCGTAGAGCGAGAGAAAAAGCACTTTGCTGTCCGGAACGAGAGACGCTGAAAAAAAAGATGATCCGTTAAAGAAAAGACTGCGTCATGGCTCATATCCTATCGACGGAGAAGGATTTTAGTTCACCCAACGGGAACAGAGATGCGAACCTCGTTGCTTATTAACGGGCGGTTCCGTGATCCAAACAGTACAACTCCGCCCGTGAACGGGGCACGGGACGCAGCGCCTGTGCTAGGCATCGCACTTTGGCTAGGTGTGGTTTCACAACACTTGGATTAGCCTACCTAGTTCTTATTCCACACACTCGTTCATAATTGAAGCTGAAGCCGTCGGGGATGTGCTAGTCATCTCGTCGCAACAAAGGGAAGGGCGGCTTTCAGCAACCATGAGGGCTGTATCGGAGAATTTACTTGCACTTCTCTTTCTCTGCACTTGTGCCAGTGTATTCTACGTCTGGAGCAGATTGGAGAGATACAACACGGGACTACAGTTAACGAGTAGGGGGTCCGCTCACATTGGGCCATCCCCGGACCTCTCTGCTAAAACTTTCCGGGCTTTGCTCGCCGTTCCAGTAGCACAGAGACTGCATTTGGGGGGCATACTGGATGCCCACAATCTCACTGGTGTTGCGGATCAAACTGGCTCTTTAGGAATCAGAGATTACCATATGAATGTAGATAACAAGGGGTCAGCACAGAGGGGGGTCCCGGACAAATTGGGCTCTCCGGTTGAGGGAATTTTTTGGAGTGAATGGCTTGAGGATAAGTTTCCCGTCAGCTTCAGTGAGGAACATGCCCGGGCATGGAGAGGGAGAGCCCGGGGACATCGGATTGTCAGACTGGAGCCGGGCTGTGGGAGAATATCCAATCAACTGGCCACTTTTTCGGACCGATCCAAAGCATGCGTGCGTTATGGAATAAACGCGGACCAGGTGCAGGGGGAAACTTTGACTTATTACCTGGCTAGTTTGCTGGGTATTACAAATCTGCCGCCTCTCATCCTCGCCCAGTTGAACATTGACAGTGAACAATGGGCTTCTGTGAGAAGAAGAATAGGAGGTTTACAGTGGAGTGAGCGGGCGGTGGTCTCGCTCACCCAGTGGGTCGCCAACCTGACAGGGGTAATCACACCTGCGCCGCTGCGCCAAGAGAGCAAGGGGCTGCGTCCTCTACGGGGGGAGCTGGGGAACAAGACTACGGCGGAGTTGCTCGAGCTAATGCAGTGGACGGACCTGATAATATTGGACTACCTGTCTGCTAACTTCGATAGGCTCGTTAGCAACCTCTTTAGCCTGCAGTGGGACTCGCgcgtgatggagagggagaccaACAACCTGCTCAGAACACCCCGTGGCGACCTGGTTTTCATCGACAACGAGGCAGGGCTTGTGCACGGTTACCGTGTACTGGATATGTGGGAGAAGTACCACAGCACCGTCTTGGACTCGGTTTGTGTGTTCAGAAAGAGGACAGTACAGCGTGTTATAGAACTGCACCGGCGCAGGGACACCAGGACTCGGCTGCTCGAGCTATACAGAGACAGCGAACCATTGTCTCCGGAGTTAGGGTTTCTCTCTGATGAACATGCGGGAGTACTACAGAGTCGAATAAGCAGATTATACAAACACATATTGCATTGCAAGGTGAAGTACCACCAGCTGGGCGTTTAGTTTTGATTCCTCTCATTTAGAGGTTCTGTATCTGGCATCTGCTCCACAGAATGACGTGTGCTGCAAATCAGTAACCACACACCTGTACTAGATTAATGCGCGTCAATTGAAACAGTTTTTTTAATATATTGATGAACTACCTCTTGTGAAAACAACGTTTTGCCTACTTTATATGTCTGCATAAATAGTCACATTGACGTTGATTTTTGGCTTCGTGCAGGATGGGTCATAATTTATTTTCAGCCAGCCTCAAAACATAGCTGCAGGAATAATGTGATATGAGCCAATGCATCTTTGTAGCTGTTTAGGAGCCAATGCATCTTTGTAGCTATTTAGGTTTAATGGTCAGCCTTCAACCTCAGGAGTTTGATAGGCTACACAGCTGTGTTTATTAATAGGAATAAACTATTGTGGTGTAAGGGGGGATAATGAATAATCACTTCATACCATCTGTATTCACAAGGTGCATTGTGTTCAATAATCTCCATAGGAAACTGGATTGCTTGATAATGAGAACCAGGCCTTAATAGGTTACTCCTAAAAAGTTTTGTATTTGTTACCACAAAAATGTATCATGTAGACTTTGTCACCTGTCTCACTCCTTTTATAGAAGCTCTAGCCTACTGTACAATCAATTGTCATTGCAAACACTTTCATGTATTTGGTTGTCTTGTGATTGTATCTTCTGCCTTAATGTCAGTGGTGTAGTGGGGGATATATGCAGGTAGCAGATATATGCCATTTACCCACTTTTTCCCCGTGGGCATTGCGTATACTCACTACTTAATCCCCACTGATGCGTAACAAAGTAGTATAGTGAAGGTATATGCCATATAAATTATGTAGTACAATAGATACTTTATtcacaaagtagcctacacaatcgTAATAAAGCATGTGAAATATATGCACATGCGCGCCGCACACATAGCTACActgaatataaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttccatacg

Function

NR:

description
four-jointed box protein 1-like

GO: NA

KEGG:

id description
K16674 FJX1; four-jointed box protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600613.2 True 2769 mRNA 0.47 1 37028885 37031653

Neighbor

gene id symbol gene type direction distance location
trim44 LOC106573354 coding downstream 75914 36884472 ~ 36952971 (-)
ldlrad3 LOC106573355 coding downstream 201604 36712864 ~ 36827281 (-)
LOC118966750 NA coding downstream 387776 36641055 ~ 36641109 (-)
LOC100750228 irf-7 coding downstream 478883 36539797 ~ 36550002 (-)
LOC110522187 LOC106573361 coding downstream 619821 36370091 ~ 36409064 (-)
LOC110522333 NA coding upstream 180767 37212420 ~ 37248824 (-)
pdhx pdhx coding upstream 255903 37287556 ~ 37347643 (-)
LOC110522348 LOC106573397 coding upstream 348915 37380568 ~ 37397634 (-)
LOC118966683 NA coding upstream 639196 37670849 ~ 37675533 (-)
LOC118966685 NA coding upstream 644728 37676381 ~ 37681639 (-)
G39231 NA non-coding downstream 2850 37025735 ~ 37026035 (-)
G39217 NA non-coding downstream 11333 37017292 ~ 37017552 (-)
G39194 NA non-coding downstream 28417 37000147 ~ 37000468 (-)
G39158 NA non-coding downstream 58221 36970448 ~ 36970664 (-)
G39240 NA non-coding upstream 6852 37038505 ~ 37038867 (-)
G39270 NA non-coding upstream 30163 37061816 ~ 37062020 (-)
G39282 NA non-coding upstream 38815 37070468 ~ 37070678 (-)
G39284 NA non-coding upstream 39222 37070875 ~ 37071190 (-)
G39495 NA non-coding upstream 39981 37071634 ~ 37071882 (-)
G38855 NA other downstream 518056 36508538 ~ 36510829 (-)
G38045 LOC106573386 other downstream 1306829 35721440 ~ 35722056 (-)
G37976 NA other downstream 1445277 35583292 ~ 35583608 (-)
G37907 NA other downstream 1587557 35440918 ~ 35441328 (-)
G40079 NA other upstream 684887 37716540 ~ 37717033 (-)
G40732 NA other upstream 1093627 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1155835 38187488 ~ 38191736 (-)
G41868 NA other upstream 1990152 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 6007075 42852829 ~ 43129052 (-)

Expression


Co-expression Network