LOC110522333


Basic Information

Item Value
gene id LOC110522333
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37212420 ~ 37248824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600657.2
GCTCTgaaaccctctctctcacacagaataTAAAAAAAGTTGGCCAAAGTCTGTCTCAGCTCCAATAGCTACCAGACACccacaacaacctctctctctttttatcgctctctctctctctctctctctctctctctctctcacacacacacacacaccacccctcacTCCTGGCACAGAGAAGACAGGACCACTGGAGAGACCATACAcacctccgcctcctcctccagTCACTCACCCAGCCATCGCCAGACGTTAAGCCCAGGATGTGGACTTTGCTCTTGGGGGTCACCTTAGGATTACTGGCCTCCTCCAGGTCGGAACCTGCTCAAGCTACAGTGAAATCGCGTAGCTGCAGCCATGCCAGAGTGTTCCACGTGGAAGGACCAGATCGCTACTCATTGACCTTGGATCTGGCCAAGAAGCTGTGTGAGAGTCTGGGAATCACCATTGCCAGCAGGGAACAGGTCATCGAGGCCCATGCCCATGGCCTAGAGACCTGCAGATATGGTTGGATCAGCAACGGAAGCACCACCATCCTCAGACAAAAGGCTCATGTTAACTGTGCCAACAACATGACTGGAGTCTTCTTCCATCAAGACTCTCCGGAAAAACCTTTTGATGCCTTCTGTTTCAATGCATCAGAGTTGGCTGACAAGAACTGTGATGCGGCCATCAACCCTGATTCCACAGGACCAGAGAGTGTTCAGGTGACAGATGCTGCAGGTGAGGCCACAGGCCCTGAGGATGGAGCCCAGCCGGAGACCACCATCAACTCCGAGCCTGACACCCAGGACACCACCTCCGCCCCTGGAGAAAAGGGAGCAAAGAGCACCACTGAAGTAATGGAAGCATTGGACACAGACCAGCCTGCACCCACTGAGGCCAGCCAAGTAAAGTCAACAGCATGGGCTGAGAGTTATGCTTCAGAGGGGGCAGCCACAGAAAGCCTTAGCATAGGAATGACGGTTGAGGGGAATGGGACCCAGAAAGCCAGCCCCACTGAGCACCCTGGGGTGGTGGTCACTGAGATGGAAGAAACCACTGTGTCTGGAATGTTGCCTTCTGGCTCAGATGAGGAGGGGGCCTCTTCTATGGCACCATCTGTTAAAGAGCCAGGAGAACCACAGGGCCGGGCCAGAGAGGAGGATTTAcaggagaaggaggtggaggtaggAGCCTCCACGCAGCCCATTCCTAATGGGAAGATGAATCCAGGTATGGGAGCAGACCCTACTCCAGCTGGGCAGGAGATCAGTAGCACACCCAATTGGCTGGTCATTGTGGGAGTGCTTGTGGCACTGGTTGCTATTCTCCTCACGTGTTTTGTTGTGGTCAAGTATAAGAGCTGGTGCGGTAAGCAGGAGACCCTGATGATCACCAATAAGGATGGGAATGAGGGTAACGGTGCGGCGGCGTCAGTGGCTAGCTCCCGCGcccaggagagagagcaggagatggTGACCCTGATGAATAAAGAGAAGATCCAGGAAAACGGAAACAAGGAGGAGTTCACCGCCATCACACTGGAGGAGTCCCCAGAGAAAGAACAGCTAGCgtgagagagtagaggaggaggagagacagggagacagagagtgtgtgggtgagtgagcgagtgagtgagtgagagagagagagagagagagagagagagagagagagagagagaagaatagctATGTTGGTCATGACACTGGGGCAGGACTAGAGAGAGGCTGGGTGGGATGGAGACGGACACTTTGGCCTGGTACCAACCAGACAGACACGCTGAACATACCAGCTGGGGTTGGGGTGGGTGCTTTGTAAATGGAAGTGGTGGGTAATGCTGTATTGATTCTGTTTGTTGTTTTATTCTGGTGAGCATGCCTGGTTTGCCCCACCTACTTTTTTACTAAGGTACAACATCTGAAACTGGACCGACCCTTTCCCTGTCTGTCAGATGAGCTAGATAGTCCCTTAAAACCAAGAGGAGCAAAATTATGCTTTATAGCTTCCTATGTCACGGTGGTTAGAATGGGATAATTTTCAACAGCAGGGGTGTCAACCCAGGCTTCTGGAaagacacagagatacacacctGTTGATATTCACCCCTGCCTTTCAATCAGGGTCTAATCTAAATCTGAGAAAATCATACTGGCTTCTCTAGCCAATAGGTAACATTAATAAAACATTTGAGTGCCAGGTGGAAATGAACCCTGCAGACCCTGGATAACTGGAGGTTGACAATGGCATCCCTGATCTAAAGCCTGATGTATGTGTTGCTCTAAGTGGAGatgttgaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtggggagCGATAAAGTGGGTTCATAAAGTCACAGGGATATGGGTGTGAGTTTTAAAGGTGGGGGATGGGGGAGCTTGGATGCCCTCCAAGTTCAATAGGGGATTCAGGTTTGAAGGACATTGTTGATACTGTGTTACTCAAAGCTTTTGAGGCATTGGGTTggaaaatagacacacacactcacagaaatGTGAAAACTAAACAGACATGGGTGGATAATTTGGCTCGATGTTCATGGGATTCATATTGTTTCTGATGATGGATAAATGTGAGATGTTGTGGCCCACTGATGTCGTTTCTTTTGATATTAACCTTGTGTATATTTCACTTGTTTCCTGTGGATTGCggttttattttgtttttccaAGAAAACACAATATTACTATTTAAATTTGTGCTGTttggatattattattattttttgcttcTGTAAATAATGTATGCGTGTTTTCCAAATGGCTTAGAAATAGTGCTCAATCATCGTTTTGGCATGCACATGCCCTTTAATGATTAAAGAAAAGCTGCCATATTTGAGTTATTTAATCAAATGCAGAATTTAAGGGGGTGTTCAGTTGTGATAGAGCATTTGCAGTAGAGTGGATATTGTATGAATCAACTTCATGTACAGTATTCAAGACTGTGCATTTTAAATACCTTTATTATGATGTCAATTAACATGGTCTGTATACATGAGTAAGTCATGTTGGATAGCACACAGGATTGTATAGAACATTTGGATGTTGGGGTTCACATGAATTGTACCATATAATTCACTTCATACTATATTGACAGAAGCGTGCAGTCTACAATGACCTAGCATTGTGTAGTAATGCATTAAACTGTGATGAATATCATCCAATGGCACCTAACAGATAGAGCCCTAGGAGTGCTGGAACACCTGCCCTTTTCCCCTCCTATGAAAGATGTGTCCTTTTGGTTGGTGGTGTTTTTAAAAACGAGTTAATTTTTTCTCACTTGTAACGTTAAATGCAATGAATTTCGTATAAAAGTAGATCATTTCTCATGAACTCATTAATCTTGAAAAAAAGTCCTCTGCCACCGGAACAGTGCGTTGCTGAGCTTGTCCTCGTCAAATGCACAAGCTTCCAACCTGTTATAATTTTATATTACAATATGTAATATGCATAAatatttgcagtgtacaaacttATTAACATGATAAACAGGAATTATATTTATGCTAAAGGGTGGCCCAAAATATATATCTGAAAGCCACGCTTCCAATAAGCCATGCCTCCAATCTGATAGGTTGCCACCTCCACAATATATTATTCAAAAGGTTCATAattgaacacccccccccccccccccccaacataaAACGGTTCTGGCTTGAACCTTTAACACAAGAGTTCCTTGAAGACCCTTTTCAACTGGAAAGGTTCCGCCGGTGTGGCAACCCAAATGGTTCTTCCAGGCACCTTTACTTCTAAGAGAGTACATTAGCGATGATCAGCTGATATAGACTACCCACCAAAGGAGTGATTCTAGGCACGCAAAGAAGTAGTGATTCTTTCTAACTCCCTTTCTGGGTTTTTTTGTAAAATGAAAAAAACATTTAGTCTGGCTACAGGAGCAGTAGAAATGTATGAATGGAATTAAGGTAGATTTTTTATTTGACTTTGAACACCTGCTCCATCAAAGGTCTGTGCATTGTCCAGGCACCCATTAACAATTGCCAACATAACAACCAATCTACAACCCTGAGGAGTGACTGCCTCCCTCACTGACTAAACTATTACAAATGACCAGGACACACAGATATTACAGAAATGGCAGTACAGTAGAACTCCAAGAACAGCTCTGGATTGTAATTCTCTGGGTTCCTTTGTAACAAAGGAGCGGAGGCCATCTTGTTTCTGTGGCTTTCCCTTTTATGTGCACCAGATGGagggatcaaatcaaataaaatgttattcgtcacatgctttgtaaaccaCAAGTGTATAtgaacagtgaaatgattacttacgggcccttcccaacaaagcAGTGAAAAAATATTAGAAATAATAgacaaatagaaaaataataacatgaAAATAAATGCACAATTAATAAAAATAACTTGTATGATTGTATGTGGGATGGAGGGTAATGAATGCATGTGTCTCTGGCCAGGAGCTCTGTGTCTCCGTACTGATCCAGTTCCCATAGTGCCGATTGCTCCACACATCTAAGTGATTACATGTTCATCTTCATGCTGAATTTTTCTTTCGTAGGCAAATCACTTCTATGTGTGGTTTTGTGTGGGTATTGTGACAGTACATTTGTCATGCCTTTTCAGTAAGAGGCAACCGTTTTGAATCACTCTTTGTGTCCCAAGATTTTTGAGGGCTTTTTGCCTccatttttgttgttttattttgttGCTTTCATGCGATTTACTTTGAGAAAAATGTGCAAATCATTTAGTGTAGGAGTGTATAATGATGAATTAACAAAACGTTGTTAATGATAAAGATTTGTAAAGTCATGGATGAAATAAATGTGTATAGAGGAAATGA

Function

NR:

description
CD44 antigen-like

GO: NA

KEGG:

id description
K06256 CD44; CD44 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600657.2 True 4933 mRNA 0.45 8 37212420 37248824

Neighbor

gene id symbol gene type direction distance location
LOC110522309 LOC106573353 coding downstream 180767 37028885 ~ 37031653 (-)
trim44 LOC106573354 coding downstream 259449 36884472 ~ 36952971 (-)
ldlrad3 LOC106573355 coding downstream 385139 36712864 ~ 36827281 (-)
LOC118966750 NA coding downstream 571311 36641055 ~ 36641109 (-)
LOC100750228 irf-7 coding downstream 662418 36539797 ~ 36550002 (-)
pdhx pdhx coding upstream 38732 37287556 ~ 37347643 (-)
LOC110522348 LOC106573397 coding upstream 131744 37380568 ~ 37397634 (-)
LOC118966683 NA coding upstream 422025 37670849 ~ 37675533 (-)
LOC118966685 NA coding upstream 427557 37676381 ~ 37681639 (-)
LOC118966688 NA coding upstream 433820 37682644 ~ 37687745 (-)
G39575 NA non-coding downstream 10063 37199485 ~ 37202357 (-)
G39572 NA non-coding downstream 14984 37197158 ~ 37197436 (-)
G39502 NA non-coding downstream 15772 37077411 ~ 37196648 (-)
G39495 NA non-coding downstream 140538 37071634 ~ 37071882 (-)
G39284 NA non-coding downstream 141230 37070875 ~ 37071190 (-)
G39618 NA non-coding upstream 26638 37275462 ~ 37275700 (-)
G39706 NA non-coding upstream 160378 37409202 ~ 37409826 (-)
G39711 NA non-coding upstream 170338 37419162 ~ 37419471 (-)
G39773 NA non-coding upstream 222490 37471314 ~ 37471527 (-)
G39812 NA non-coding upstream 250024 37498848 ~ 37499276 (-)
G38855 NA other downstream 701591 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 803401 36370091 ~ 36409064 (-)
G38045 LOC106573386 other downstream 1490364 35721440 ~ 35722056 (-)
G37976 NA other downstream 1628812 35583292 ~ 35583608 (-)
G37907 NA other downstream 1771092 35440918 ~ 35441328 (-)
G40079 NA other upstream 467716 37716540 ~ 37717033 (-)
G40732 NA other upstream 876456 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 938664 38187488 ~ 38191736 (-)
G41868 NA other upstream 1772981 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 5789904 42852829 ~ 43129052 (-)

Expression


Co-expression Network