LOC110522348 (LOC106573397)


Basic Information

Item Value
gene id LOC110522348
gene name LOC106573397
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37380568 ~ 37397634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600689.2
TAGGACAAGGAAGCTGACAGCATAAAATACCCACTGCTGGAGCAGCACCTTGGTGTGTGTGGGCAagcacttttttttgtttgtttttggagtTGGAAAGGCACAACTGCTAGCACTGACAACAACACTTCACCCACCTGTGTACAGAAGCACAGCTACTGTAGCTACCCACCTAAAGTCATCTGAGAGaagaacgagcgagagagagagacaacacacccATTGAACACAGGCCTGGTCGGACTCCATTCCACAGCTCTGCTCTGGACCATGGTCCGTCATACCACCTGTATCATGAGCATCCCTTCCACTGCCAGCATTGAGAGCCAGCTGCCCACAACATGGAGCTCCTACCCCTGCCCAGACATTTCCACAGTGATGCCCGGTTACACCAGTCGACTGTGGTCCCAGGACTACAAGCCTCAGTATTGGTCAAAGTACCTGGTGTGGCAGTGGCTGCAGCAGATGGTGGACATGCACCAGATTGACGCTGCCAGCATCCACTTCCAGAACTTTGACGTGGACGGCCATCAACTGTGCAGCATGACCTACCAGGACTTCACACGGGCCGCGGGCACCGTGGGGCCTATCCTCTACCAAAGCCTCAACGAGCTCAAATGGAGGGGACAGTATCCTGGAATGGAGTTTAACCCACTGGACATTATCAAATCAGAGCCAGATGAACCTAGCATATATCCTGCAGacatttttgatcCCTCATGTCGATGTCTCGCACCTGTGGCATCACCCACTACCTCAAGTCCAGACAGTCGCCCTCATCAGATCAAAAAACACAACCCCCGGGGGACCCACCTGTGGGAGTTCATTAGGGACATTCTTCTGAACCCAGAGCGGAACTCAGGCCTGCTCAAGTGGGAGGACCGGACAGATGGAGTGTTCCGTTTCCTCAATTCAGAGGCTGTTGCTCAGCTGTGGGGCAAGAAGAAGAACAACAGCAGCATGACCTACGAGAAGCTCAGCCGAGCTATGAGATATTACTACAAACGGGAAATCCTGGAACACGTGGATGGCCGAAGGCTGGTCTACAAGTTTGGGAAAAATGCACAAGGATGGAGGGAGTCAGAAAAGTAAAAGAGTCTGGAGCACACCTCTCCACTATTTtgtgcctttttttttgcctgtctatttatgtttgttttttattttaatgtgTCACTGTGatgttttactatgttgttgTTTTACAAAGAGGAGCAGAATGCCTTGTTGCAACTCTTGACATTTGTGGGAGTTTTTGTATGATATGTTTACATTTGGTTAAGCAAGGctacattttacatttaattgcttacccagctagcacataaatgttctgagaaccaaatgtttcttagagcttggtgacaGCGGGGTTGTCATATGGTTATTTTGTATACAACCTTCctacaactttctgggaatggtgcaggatagttgcttgacTGTGGAACATTCTcggcacatttaaggaacttgatttttttttttttatataatcttggtatttcattactttaactgaatgtttcctaaaagttcaaacatggtagGATTTAATGTcaattttggtaatgttctaggactACAACTactttgacattgggaatgttctcaaatagttcagagaatgttaagaaacaacaGTCTTCTGTGGGattttcagtacttcagcataatgttttCTGCAGGTTTCATCATGGTTatttttaaagtcatgttctcagaacgttaagaaaatgttccataaaaaccacaagaacaTTAGTAACATTCAAATAActttctaagaatgttatttaaaaacatttaattcttagcatcaacaaaactctttATCCTcaatcttgttaagtgtgttcaggtgtgttggcctcGCCCACTTTTTGGTCACACCTGATCTTTATTAATGcctgtttcctttcaaatggggtctgtttgaatggACTAAAATGAACATAGCATGCTAGCTCAATCCTGGTTGCACAGTGGagtaattccatggatagagaaccgAAGACTATAGGTACTGAATTTCACTGACGTTGTGCCACAACAGAAAATACATGTGTTTGCAAATTAATTTCTGTGTCCtatctagggttgcaaagggagggtatttTACTGGAAACTTTCAATTATGTAATCTACCACAAGATAATGTATCTACTGGTCTTTTGGGGGTATTTCATAATATCACCGGTGTCTGTAAttctctctgtcctgttttcTGGCCTTTATCACATGgaaaatatatgaaataattaaatacaattatttaaaaataaaatgaatgaGAAAGCTGTAAAATAtcatcctaaatataaaccatccaacttagtgaataccattggtgcctttttatttattttactacgtcaacatgtatttttttgtgaatgtttTTGCCTCAAACTGGTGAAAGTTGTGATTAaatgttgattagatgcttttctAGGCTATTTTGTCTTCACCCATATGGTCTATCTATTAGAAACgtatggacaatatggacacagatatataAATGAACACTATATATGACCATTTCTTTTTTAAgatattcaagtataaattaccaaagttacgaTAGATTGCAATAGATTTTCTGTTAATCACCAAAATTAATGAAGATTTCTGTAACTTTGGTACCGATAGGACTAGGTTTGCAAAGCattctgtgcttggagttcaaaacagttaacccaaACTGTTATTAAAATTCTTATTGAGTGAACGTTTTAAGAAAGTAACCTTTACATTTTGTTCAAAACATTCAAAACATTAAGAGAATGTTCTCAGAACtttatttaattaccttcaaataaccaACCATTTCCGTTCTCAGAACATATAAACGTTATTTAAGTGTTAGCCATTGATGCCATTAATGCTAGTAAAGTCCTACTGTATGGCATCGTTCCTAGAAGCAATGGTAAACCAAAAAagtacattcccacaacttccatTTGAACCAAATTGTGATGAGTACTTGCAGTGATGAATGTTTGCAGTACTGGGTACTTGATAAGTATTTGCACTGAACTACTGTAGATGTATTCACCATACATATGTGCAGTAAAAGGGAAGGACATTGTACTTTTAAATATTTCCGGATTGTTGTACATATTTAAATTGTGAAATGTTCTTTCCAAAGTATGTTTGATTGATGTGttatacaatgcattcagaaagtatacaaACCCTTCGACTTTTACACATTGTTACGTTAgactaattctaaaatggattaaataaataacaaggccccatcaaactacacacaataccccatcatgacaaag
>XM_021600697.2
TAGGACAAGGAAGCTGACAGCATAAAATACCCACTGCTGGAGCAGCACCTTGGTGTGTGTGGGCAagcacttttttttgtttgtttttggagtTGGAAAGGCACAACTGCTAGCACTGACAACAACACTTCACCCACCTGTGTACAGAAGCACAGCTACTGTAGCTACCCACCTAAAGTCATCTGAGAGaagaacgagcgagagagagagacaacacacccATTGAACACAGGCCTGGTCGGACTCCATTCCACAGCTCTGCTCTGGACCATGGTCCGTCATACCACCTGTATCATGAGCATCCCTTCCACTGCCAGCATTGAGAGCCAGCTGCCCACAACATGGAGCTCCTACCCCTGCCCAGACATTTCCACAGTGATGCCCGGTTACACCAGTCGACTGTGGTCCCAGGACTACAAGCCTCAGTATTGGTCAAAGTACCTGGTGTGGCAGTGGCTGCAGCAGATGGTGGACATGCACCAGATTGACGCTGCCAGCATCCACTTCCAGAACTTTGACGTGGACGGCCATCAACTGTGCAGCATGACCTACCAGGACTTCACACGGGCCGCGGGCACCGTGGGGCCTATCCTCTACCAAAGCCTCAACGAGCTCAAATGGAGGGGACAGTATCCTGGAATGGAGTTTAACCCACTGGACATTATCAAATCAGAGCCAGATGacatttttgatcCCTCATGTCGATGTCTCGCACCTGTGGCATCACCCACTACCTCAAGTCCAGACAGTCGCCCTCATCAGATCAAAAAACACAACCCCCGGGGGACCCACCTGTGGGAGTTCATTAGGGACATTCTTCTGAACCCAGAGCGGAACTCAGGCCTGCTCAAGTGGGAGGACCGGACAGATGGAGTGTTCCGTTTCCTCAATTCAGAGGCTGTTGCTCAGCTGTGGGGCAAGAAGAAGAACAACAGCAGCATGACCTACGAGAAGCTCAGCCGAGCTATGAGATATTACTACAAACGGGAAATCCTGGAACACGTGGATGGCCGAAGGCTGGTCTACAAGTTTGGGAAAAATGCACAAGGATGGAGGGAGTCAGAAAAGTAAAAGAGTCTGGAGCACACCTCTCCACTATTTtgtgcctttttttttgcctgtctatttatgtttgttttttattttaatgtgTCACTGTGatgttttactatgttgttgTTTTACAAAGAGGAGCAGAATGCCTTGTTGCAACTCTTGACATTTGTGGGAGTTTTTGTATGATATGTTTACATTTGGTTAAGCAAGGctacattttacatttaattgcttacccagctagcacataaatgttctgagaaccaaatgtttcttagagcttggtgacaGCGGGGTTGTCATATGGTTATTTTGTATACAACCTTCctacaactttctgggaatggtgcaggatagttgcttgacTGTGGAACATTCTcggcacatttaaggaacttgatttttttttttttatataatcttggtatttcattactttaactgaatgtttcctaaaagttcaaacatggtagGATTTAATGTcaattttggtaatgttctaggactACAACTactttgacattgggaatgttctcaaatagttcagagaatgttaagaaacaacaGTCTTCTGTGGGattttcagtacttcagcataatgttttCTGCAGGTTTCATCATGGTTatttttaaagtcatgttctcagaacgttaagaaaatgttccataaaaaccacaagaacaTTAGTAACATTCAAATAActttctaagaatgttatttaaaaacatttaattcttagcatcaacaaaactctttATCCTcaatcttgttaagtgtgttcaggtgtgttggcctcGCCCACTTTTTGGTCACACCTGATCTTTATTAATGcctgtttcctttcaaatggggtctgtttgaatggACTAAAATGAACATAGCATGCTAGCTCAATCCTGGTTGCACAGTGGagtaattccatggatagagaaccgAAGACTATAGGTACTGAATTTCACTGACGTTGTGCCACAACAGAAAATACATGTGTTTGCAAATTAATTTCTGTGTCCtatctagggttgcaaagggagggtatttTACTGGAAACTTTCAATTATGTAATCTACCACAAGATAATGTATCTACTGGTCTTTTGGGGGTATTTCATAATATCACCGGTGTCTGTAAttctctctgtcctgttttcTGGCCTTTATCACATGgaaaatatatgaaataattaaatacaattatttaaaaataaaatgaatgaGAAAGCTGTAAAATAtcatcctaaatataaaccatccaacttagtgaataccattggtgcctttttatttattttactacgtcaacatgtatttttttgtgaatgtttTTGCCTCAAACTGGTGAAAGTTGTGATTAaatgttgattagatgcttttctAGGCTATTTTGTCTTCACCCATATGGTCTATCTATTAGAAACgtatggacaatatggacacagatatataAATGAACACTATATATGACCATTTCTTTTTTAAgatattcaagtataaattaccaaagttacgaTAGATTGCAATAGATTTTCTGTTAATCACCAAAATTAATGAAGATTTCTGTAACTTTGGTACCGATAGGACTAGGTTTGCAAAGCattctgtgcttggagttcaaaacagttaacccaaACTGTTATTAAAATTCTTATTGAGTGAACGTTTTAAGAAAGTAACCTTTACATTTTGTTCAAAACATTCAAAACATTAAGAGAATGTTCTCAGAACtttatttaattaccttcaaataaccaACCATTTCCGTTCTCAGAACATATAAACGTTATTTAAGTGTTAGCCATTGATGCCATTAATGCTAGTAAAGTCCTACTGTATGGCATCGTTCCTAGAAGCAATGGTAAACCAAAAAagtacattcccacaacttccatTTGAACCAAATTGTGATGAGTACTTGCAGTGATGAATGTTTGCAGTACTGGGTACTTGATAAGTATTTGCACTGAACTACTGTAGATGTATTCACCATACATATGTGCAGTAAAAGGGAAGGACATTGTACTTTTAAATATTTCCGGATTGTTGTACATATTTAAATTGTGAAATGTTCTTTCCAAAGTATGTTTGATTGATGTGttatacaatgcattcagaaagtatacaaACCCTTCGACTTTTACACATTGTTACGTTAgactaattctaaaatggattaaataaataacaaggccccatcaaactacacacaataccccatcatgacaaag

Function

NR:

description
ETS homologous factor-like isoform X2

GO: NA

KEGG:

id description
K17102 EHF; ETS homologous factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600689.2 False 3302 mRNA 0.39 9 37380568 37397634
XM_021600697.2 True 3281 mRNA 0.39 8 37380568 37397634

Neighbor

gene id symbol gene type direction distance location
pdhx pdhx coding downstream 32925 37287556 ~ 37347643 (-)
LOC110522333 NA coding downstream 131744 37212420 ~ 37248824 (-)
LOC110522309 LOC106573353 coding downstream 348915 37028885 ~ 37031653 (-)
trim44 LOC106573354 coding downstream 427597 36884472 ~ 36952971 (-)
ldlrad3 LOC106573355 coding downstream 553287 36712864 ~ 36827281 (-)
LOC118966683 NA coding upstream 273215 37670849 ~ 37675533 (-)
LOC118966685 NA coding upstream 278747 37676381 ~ 37681639 (-)
LOC118966688 NA coding upstream 285010 37682644 ~ 37687745 (-)
LOC118966689 NA coding upstream 291116 37688750 ~ 37693851 (-)
LOC118964577 NA coding upstream 663455 38061089 ~ 38061663 (-)
G39618 NA non-coding downstream 104868 37275462 ~ 37275700 (-)
G39575 NA non-coding downstream 178211 37199485 ~ 37202357 (-)
G39572 NA non-coding downstream 183132 37197158 ~ 37197436 (-)
G39502 NA non-coding downstream 183920 37077411 ~ 37196648 (-)
G39495 NA non-coding downstream 308686 37071634 ~ 37071882 (-)
G39706 NA non-coding upstream 11568 37409202 ~ 37409826 (-)
G39711 NA non-coding upstream 21528 37419162 ~ 37419471 (-)
G39773 NA non-coding upstream 73680 37471314 ~ 37471527 (-)
G39812 NA non-coding upstream 101214 37498848 ~ 37499276 (-)
G39843 NA non-coding upstream 124828 37522462 ~ 37522710 (-)
G38855 NA other downstream 869739 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 971549 36370091 ~ 36409064 (-)
G38045 LOC106573386 other downstream 1658512 35721440 ~ 35722056 (-)
G37976 NA other downstream 1796960 35583292 ~ 35583608 (-)
G37907 NA other downstream 1939240 35440918 ~ 35441328 (-)
G40079 NA other upstream 318906 37716540 ~ 37717033 (-)
G40732 NA other upstream 727646 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 789854 38187488 ~ 38191736 (-)
G41868 NA other upstream 1624171 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 5641094 42852829 ~ 43129052 (-)

Expression


Co-expression Network