LOC118966683


Basic Information

Item Value
gene id LOC118966683
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37670849 ~ 37675533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989487.1
ggactcattccctcccaaactaaaaggagaaaccaatgttttctctggtaggcacaacctacctggcacccctataaaaaataacctcaagtcaaaaccgttacataaAAAATGGCACCCCAGATGGGACAGCTCAACATTGAGAACTAACCAAAGCAAATATTTTGTGTGGAATTAAAACAATGGATTCACCCCAAGATAATGTGCTCATCCATTTCATACCTGTCAATGGGAATACACAGGGCCATTCTGACCATCAAGCTGACAACACAAATCATAATGGGAATGGAGATAATGGAGTTGATTTGGGCCAGAGCCCTGGGAATCTGAATGCTCGGTCTGGACCACAGGCCACAGGCGGTCTAAGCAGTTACTCACTTATTGACATGGATCTGTGTGAAAGTACTGAGCCAGCCCTCCATCTGACACCCAACCTTCCTCCATTGTCTGGTTTATCTCCAGAGGTTGTAGTTTTACAACTTCAAGGTGACATCCTTGATATTCGTCGGACTCaacaacatctccaaactctTATCCACGATAAATTAAAATGTCTGAGGGAAGAGCAACAACAGAGTGCCATGGAATTCAGAAACTCACTGAGCACTCtaacccacacactgacagagctcagtGAGAGTGGAAGACGGGAAATTACTGGTGCCATGGACAGGCAGTTTCACTACCAACGAAACCAACTCACTGCCACTCTCCAATGGCGCCTGCAACATCATCACACTGAGGTCCTCAAGGACGTTAATTCTGTTTTTTCTCCCATGGTTAACACTGTAGACCACTTGCAAACAGAGCTCTCTAATTGTGTTAAAATGTTGGATGACGTGTCTGTGGACATGGCCGCCATTAGGCACAACTCCTTACACAGAGTTTCTCTGGTGTCCACTTCTGTTCAGACCACTGAGGGCCAAGCTGGCACCTCTGAAGAGCCAAGACAAGGCCATGCTACAGCCACCCCTTGCAGGATGCAATCCACCATGCATCCTGGTGTTCATTTTCATTGTCCGATAACGCCCTCCCCCTCTACTTCCTCAATCCCTCCTAGCTCGTTTGTTCATGGTGAATTGAGTAGATGTCATGTGGGGGCGATGCCCATTAAATTGCAATTTCCCACCTTTGGGAAAAAAGATGACAGTCCGGATCCGCTAATGTACCTAGAAAGATGTCGTGACTTTCTTGCCCTCAATCCCCTGGCTGACGAAGAACTCCTTGCCACATTGAGGAATGTGTTGCATGGGACAGCTCGAGACTGGTGGGATGTGGCACGTCTCACCACTACCTCCTGGGCTGACTTTGAGGCCAAGTTTTCCTCTGCATTTCTGTCTGAGGACTACACAGATGAGCTGGCAGACAGAGTCAGGAATCGAGTGCAAAGCGAGAAAGAGGGTATCCGTGACTTTGCATACGGTTACCACTCCCTGTGCAGAAGGTGGAAACCTGGcattgaggaggaagaggtcattaAATTGATTTTGAAGAACATCAACCCACTACTAGCCAGTCAACTCCGAGAACGAGTCACCACTGTCGATGGACTGGTTCGCTTGGGACAGCAGtttgagagggacagagaatgccaacagcaatatgaccaaagaAAGAAACAGACACCCAAACCGTTACCCAAGACAGACCATCAACAACAGCCAGAGTCTCAAGCCATGACCCCTCTCATGTTCTGTTGGAGATGTAGCCAAAAGGGACATTCTTCAGCTACATGTCCAAGACCGTATCACGAAAACCCTTCCAGAAACCACAAATCACAACAGgccaacacacctaactctcttcGCAGGAATGACCATCCTTCTCTGGGTGCTTTAACCAGAGCTGAAATCCCAAGAGTCACTGCCTACGCCCCCCCATCGACATCCCCTTCCTTTCAGTTCATACCGCACCAACTGGTGTTACCCCTGTCCATAGGCCCATGGACAGGAAGAGCCATCCTGGACACCGGGTCATCCTACACACTGCTCAATGAGAAACTGTGGAAGGAGGTTAAAGGTCCGCAATACAACTTGAAGCCGTGGACAGAAGGTCCACTCTATCTGGCTGATGGTGAGGCTAAACGACCACTTGGATGGAGTGAGATAGAGTTCCGCCTGTGTAACCGCTCCTATATGATTCCTTCGGTTATCCTACAAACCAAGAACCTTGCTTTTCCTGTCGTGTTGGGAATTGATTTCATGTACTTCAGTGGTGTCCAGATTGATATCGCACACAATTGCTACTGGTTTCCATACAATCCGAGCAAGAAGCATTTCTTCCAATCAGAAGCTACGAAGTTCCATGATTGGGGTTCAAATGTAGCAGTCTTCTCTGCCGTTGCTCCGTTACCACTAACCCTTGATAATCCTTCTGACGATCTCCTTTTACAGGCTGTAAGAAGAGCTCAGCTGGAACATCCAGAGGAGTTAAGGCTGTTGGAACAGCTGCAGAATAATGCTGATGTATGTACTTCAAGGCTAGGACGCACCGGGCTCCTGAAGCACAAAATATTCCTTACACAGGAAATGCCGATCAAGCAAAAGCCATATCGTTTGTCCCCAGCAACGCTAATCATCCAAAAGGGACTCATTAATGATATGTTAACACAAGATATAATAGAACGTTCCTCCTCtccttgggctgctcctgttgtcctCATCCCAAAAAAGACTGGTGGTCTCAGATTTTGTGTGGACTATAGGAAGACCAACAATGTTTTCCAGACTGATGCCTATCCTCTTCCTACCATCCACGAGATCCTGGAGTCATTGTCTGGCGCTGTTGTGTTCACTACCCTTGACCTCAATAGTGGTTATTGGCAAGTTGAGATGGACCAGGAAAGCAAGGACAAGACTGCTTTTGTCTGTGCTGAGGGCTTGTTTTCCTTTAAGGtgatgccttttggattaaagaATGCACCTGCCACTTTCCAAAGACTGATGGAGATTGCGTTAGGTGAGCTCAAAGGGAAGATCTGTTTCGTCTACCTGGACGATATAATTATCTACTCCCAGAACAGAGAACAACACTTTCAAGATCTTCAAGCAGTGTTGGACAAGCTAAGAGAAGCTGGTCTGACCGTGAATATGAAGAAGAGCAACTTCTGCCAAACTTCCCTGAAGTTCCTTGGCCATATTGTGTCTTTCGACGGCATTCATGTGGATCCTGAAAAGACCAAGGCGGTACAAGATTTTCCTGTGCCAACCACACTCAAGGCCCTTCAACGGTTCCTTGGGATGGCTGGATGGTACCATCGGTTTGTGTCAAACTTCTCCCAGGTGGCAGAACCCCTCAACGCGTTGAAGCGAAAAGGAGTGAAATTCCTATGGACGGCAGAGTGCCAGACATCCTTTGAAACCCTGAAACGACACCTCGTCACACCTCCCATTTTAGGTCATCCCAACTTTGATTCCCCTTTTGTTGTTTACACTGATGCAAGTGATGTTGGACTTGGTGCTGTCCTAGTCCAACAGACTGGACTTGGCACTGAAGAAGTGCTAGCGTTCGCCAGTCGGACATTGAATGGAGCAGAATGGAACTACTCCACAACCGAGCAAGAGTGCCTTGCAGTTGTCTGGGCTTTGGAAAAGTGGAGGTACTACCTGGAGGGAAGACACTTCACTGTGGTCACTGACCATTCCTCCCTTGTGTGGGTGTTCAAGACCAACAAACCAAGCACCAGACTCATAAGATGGGCTCTACGGTTGCAAGAGTTCACCTTTGCAGTAGAATACAGGAAAGGAAAATACAACACTGTTCCAGATGCCTTATCCAGGGCTCCTGCTTGTGATAACGGTGGCCCTCATTTTACATGTGCTACTGTCCTGTCAAGCAGTCGAGACTCGCCCAAAACAGACTTTCCCATCTCTGAGACCATATGGAAAGCCCAACAGGATGATCCAGAAGTACAGGCTTTGTACCAGACTATCCTGGAAGATGGAGAAAAGATGGTCAATCCTACCACAAAGCTGACCATCATGGAAGACAAAGTCTACCGTGTTTGGGTGGAACTCTTTTCCCTGCGTCAGGCCACAGCAAGGACCGTCTCTAACATCCTTACGAAAGAGATCCTGACTCGCTGGGGAGTGCCTGATTACATCCTGTCTGATCGAGGTTCCCAATTTGTCTCTGATCTCTTTGAGGAGACCTGCcaaagatggaacctgagacagAAGTTGACCACGGCCTATCACCCACAGACCAATCTCACTGAGAGAGTAAATCGAACCTTGAAGACAATGATTGCTTCCTATGTAGGGACCCAGCACAAACACTGGGACAAGCACCTTCACAAGTTTCGATTTGCCCTGAATTCTGCTGTGTAA
>TU45180
CAAACCGTTACCCAAGACAGACCATCAACAACAGCCAGAGTCTCAAGCCATGACCCCTCTCATGTTCTGTTGGAGATGTAGCCAAAAGGGACATTCTTCAGCTACATGTCCAAGACCGTATCACGAAAACCCTTCCAGAAACCACAAATCACAACAGgccaacacacctaactctcttcGCAGGAATGACCATCCTTCTCTGGGTGCTTTAACCAGAGCTGAAATCCCAAGAGTCACTGCCTACGCCCCCCC
>TU45181
GCATGGGACAGCTCGAGACTGGTGGGATGTGGCACGTCTCACCACTACCTCCTGGGCTGACTTTGAGGCCAAGTTTTCCTCTGCATTTCTGTCTGAGGACTACACAGATGAGCTGGCAGACAGAGTCAGGAATCGAGTGCAAAGCGAGAAAGAGGGTATCCGTGACTTTGCATACGGTTACCACTCCCTGTGCAGAAGGTGGAAACCTGGcattgaggaggaagaggtcattaAATTGATTTTGAAGAACATCAACCCACTACTAGCCAGTCAACTCCGAGAACGAGTCACCACTGTCGATGGACTGGTTCGCTTGGGACAGCAGtttgagagggacagagaatgccaacagcaatatgaccaaagaAAGAAACAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106513761, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989487.1 False 4328 mRNA 0.48 2 37670849 37675533
TU45180 False 252 lncRNA 0.50 1 37673655 37673906
TU45181 True 376 lncRNA 0.50 1 37673912 37674287

Neighbor

gene id symbol gene type direction distance location
LOC110522348 LOC106573397 coding downstream 273215 37380568 ~ 37397634 (-)
pdhx pdhx coding downstream 323206 37287556 ~ 37347643 (-)
LOC110522333 NA coding downstream 422025 37212420 ~ 37248824 (-)
LOC110522309 LOC106573353 coding downstream 639196 37028885 ~ 37031653 (-)
trim44 LOC106573354 coding downstream 717878 36884472 ~ 36952971 (-)
LOC118966685 NA coding upstream 848 37676381 ~ 37681639 (-)
LOC118966688 NA coding upstream 7111 37682644 ~ 37687745 (-)
LOC118966689 NA coding upstream 13217 37688750 ~ 37693851 (-)
LOC118964577 NA coding upstream 385556 38061089 ~ 38061663 (-)
LOC118964575 NA coding upstream 390426 38065959 ~ 38066761 (-)
G39904 NA non-coding downstream 98989 37571522 ~ 37571860 (-)
G39857 NA non-coding downstream 136791 37533836 ~ 37534058 (-)
G39856 NA non-coding downstream 137852 37532552 ~ 37532997 (-)
G39849 NA non-coding downstream 144446 37525861 ~ 37526403 (-)
G39847 NA non-coding downstream 146260 37524369 ~ 37524589 (-)
G40049 NA non-coding upstream 10021 37685554 ~ 37691937 (-)
G40063 NA non-coding upstream 28246 37703779 ~ 37704012 (-)
G40086 NA non-coding upstream 46414 37721947 ~ 37722176 (-)
G40133 NA non-coding upstream 81663 37757196 ~ 37757454 (-)
G40151 NA non-coding upstream 95452 37770985 ~ 37771257 (-)
G38855 NA other downstream 1160020 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 1261830 36370091 ~ 36409064 (-)
G38045 LOC106573386 other downstream 1948793 35721440 ~ 35722056 (-)
G37976 NA other downstream 2087241 35583292 ~ 35583608 (-)
G37907 NA other downstream 2229521 35440918 ~ 35441328 (-)
G40079 NA other upstream 41007 37716540 ~ 37717033 (-)
G40732 NA other upstream 449747 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 511955 38187488 ~ 38191736 (-)
G41868 NA other upstream 1346272 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 5363195 42852829 ~ 43129052 (-)

Expression


Co-expression Network