LOC118966689


Basic Information

Item Value
gene id LOC118966689
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37688750 ~ 37693851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989519.1
ggactcattccctcccaaactaaaaggagaaaccaatgttttctctggtaggcacaacctacctggcacccctataaaaaataacctcaagtcaaaaccgttacataaAAAATGGCACCCCAGATGGGACAGCTCAACATTGAGAACTAACCAAAGCAAATATTTTGTGTGGAATTAAAACAATGGATTCACCCCAAGATAATGTGCTCATCCATTTCATACCTGTCAATGGGAATACACAGGGCCATTCTGACCATCAAGCTGACAACACAAATCATAATGGGAATGGAGATAATGGAGTTGATTTGGGCCAGAGCCCTGGGAATCTGAATGCTCGGTCTGGACCACAGGCCACAGGCGGTCTAACCAGTTACTCACTTATTGACATGGATCTGTGTGAAAGTACTGAGCCAGCCCTCCATCTGACACCCAACCTTCCTCCATTGTCTGGTTTATCTCCAGAGGTTGTAGTTTTACAACTTCAAGGTGACATCCTTGATATTCGTCGGACTCaacaacatctccaaactctTATCCACGATAAATTAAAATGTCTGAGGGAAGAGCAACAACAGAGTGCCATGGAATTCAGAAACTCACTGAGCACTCtaacccacacactgacagagctcagtGAGAGTGGAAGACGGGAAATTACTGGTGCCATGGACAGGCAGTTTCACTACCAACGAAACCAACTCACTGCCACTCTCCAATGGCGCCTGCAACATCATCACACTGAGGTCCTCAAGGACGTTAATTCTGTTTTTTCTCCCATGGTTAACACTGTAGACCACTTGCAAACAGAGCTCTCTAATTGTGTTAAAATGTTGGATGACGTGTCTGTGGACATGGCCGCCATTAGGCACAACTCCTTACACAGAGTTTCTCTGGTGTCCACTTCTGTTCAGACCACTGAGGGCCAAGCTGGCACCTCTGAAGAGCCAAGACAAGGCCATGCTACAGCCACCCCTTGCAGGATGCAATCCACCATGCATCCTGGTGTTCATTTTCATTGTCCGATAACGCCCTCCCCCTCTACTTCCTCAATCCCTCCTAGCTCGTTTGTTCATGGTGAATTGAGTAGATGTCATGTGGGGGCGATGCCCATTAAATTGCAATTTCCCACCTTTGGGAAAAAAGATGACAGTCCGGATCCGCTAATGTACCTAGAAAGATGTCGTGACTTTCTTGCCCTCAATCCCCTGGCTGACGAAGAACTCCTTGCCACATTGAGGAATGTGTTGCATGGGACAGCTCGAGACTGGTGGGATGTGGCACGTCTCACCACTACCTCCTGGGCTGACTTTGAGGCCAAGTTTTCCTCTGCATTTCTGTCTGAGGACTACACAGATGAGCTGGCAGACAGAGTCAGGAATCGAGTGCAAAGCGAGAAAGAGGGTATCCGTGACTTTGCATACGGTTACCACTCCCTGTGCAGAAGGTGGAAACCTGGcattgaggaggaagaggtcattaAATTGATTTTGAAGAACATCAACCCACTACTAGCCAGTCAACTCCGAGAACGAGTCACCACTGTCGATGGACTGGTTCGCTTGGGACAGCAGtttgagagggacagagaatgccaacagcaatatgaccaaagaAAGAAACAGACACCCAAACCGTTACCCAAGACAGACCATCAACAACAGCCAGAGTCTCAAGCCATGACCCCTCTCATGTTCTGTTGGAGATGTAGCCAAAAGGGACATTCTTCAGCTACATGTCCAAGACCGTATCACGAAAACCCTTCCAGAAACCACAAATCACAACAGgccaacacacctaactctcttcGCAGGAATGACCATCCTTCTCTGGGTGCTTTAACCAGAGCTGAAATCCCAAGAGTCACTGCCTACGCCCCCCCATCGACATCCCCTTCCTTTCAGTTCATACCGCACCAACTGGTGTTACCCCTGTCCATAGGCCCATGGACAGGAAGAGCCATCCTGGACACCGGGTCATCCTACACACTGCTCAATGAGAAACTGTGGAAGGAGGTTAAAGGTCCGCAATACAACTTGAAGCCGTGGACAGAAGGTCCACTCTATCTGGCTGATGGTGAGGCTAAACGACCACTTGGATGGAGTGAGGTAGAGTTCCGCCTGTGTAACCGCTCCTATATGATTCCTTCGGTTATCCTACAAACCAAGAACCTTGCTTTTCCTGTCGTGTTGGGAATTGATTTCATGTACTTCAGTGGTGTCCAGATTGATATCGCACACAATTGCTACTGGTTTCCATACAATCCGAGCAAGAAGCATTTCTTCCAATCAGAAGCTACGAAGTTCCATGATTGGGGTTCAAATGTAGCAGTCTTCTCTGCCGTTGCTCCGTTACCACTAACCCTTGATAATCCTTCTGACGATCTCCTTTTACAGGCTGTAAGAAGAGCTCAGCTGGAACATCCAGAGGAGTTAAGGCTGTTGGAACAGCTGCAGAATAATGCTGATGTATGTACTTCAAGGCTAGGACGCACCGGGCTCCTGAAGCACAAAATATTCCTTACACAGGAAATGCCGATCAAGCAAAAGCCATATCGTTTGTCCCCAGCAACGCTAATCATCCAAAAGGGACTCATTAATGATATGTTAACACAAGATATAATAGAACGTTCCTCCTCtccttgggctgctcctgttgtcctCATCCCAAAAAAGACTGGTGGTCTCAGATTTTGTGTGGACTATAGGAAGACCAACAATGTTTTCCAGACTGATGCCTATCCTCTTCCTACCATCCACGAGATCCTGGAGTCATTGTCTGGCGCTGTTGTGTTCACTACCCTTGACCTCAATAGTGGTTATTGGCAAGTTGAGATGGACCAGGAAAGCAAGGACAAGACTGCTTTTGTCTGTGCTGAGGGCTTGTTTTCCTTTAAGGtgatgccttttggattaaagaATGCACCTGCCACTTTCCAAAGACTGATGGAGATTGCGTTAGGTGAGCTCAAAGGGAAGATCTGTTTCGTCTACCTGGACGATATAATTATCTACTCCCAGAACAGAGAACAACACTTTCAAGATCTTCAAGCAGTGTTGGACAAGCTAAGAGAAGCTGGTCTGACCGTGAATATGAAGAAGAGCAACTTCTGCCAAACTTCCCTGAAGTTCCTTGGCCATATTGTGTCTTTCGACGGCATTCATGTGGATCCTGAAAAGACCAAGGCGGTACAAGATTTTCCTGTGCCAACCACACTCAAGGCCCTTCAACGGTTCCTTGGGATGGCTGGATGGTACCATCGGTTTGTGTCAAACTTCTCCCAGGTGGCAGAACCCCTCAACGCGTTGAAGCGAAAAGGAGTGAAATTCCTATGGACGGCAGAGTGCCAGACATCCTTTGAAACCCTGAAACGACACCTCGTCACACCTCCCATTTTAGGTCATCCCAACTTTGATTCCCCTTTTGTTGTTTACACTGATGCAAGTGATGTTGGACTTGGTGCTGTCCTAGTCCAACAGACTGGACTTGGCACTGAAGAAGTGCTAGCGTTCGCCAGTCGGACATTGAATGGAGCAGAATGGAACTACTCCACAACCGAGCAAGAGTGCCTTGCAGTTGTCTGGGCTTTGGAAAAGTGGAGGTACTACCTGGAGGGAAGACACTTCACTGTGGTCACTGACCATTCCTCCCTTGTGTGGGTGTTCAAGACCAACAAACCAAGCACCAGACTCATAAGATGGGCTCTACGGTTGCAAGAGTTCACCTTTGCAGTAGAATACAGGAAAGGAAAATACAACACTGTTCCAGATGCCTTATCCAGGGCTCCTGCTTGTGATAACGGTGGCCCTCATTTTACATGTGCTACTGTCCTGTCAAGCAGTCGAGACTCGCCCAAAACAGACTTTCCCATCTCTGAGACCATATGGAAAGCCCAACAGGATGATCCAGAAGTACAGGCTTTGTACCAGACTATCCTGGAAGATGGAGAAAAGATGGTCAATCCTACCACAAAGCTGACCATCATGGAAGACAAAGTCTACCGTGTTTGGGTGGAACTCTTTTCCCTGCGTCAGGCCACAGCAAGGACCGTCTCTAACATCCTTACGAAAGAGATCCTGACTCGCTGGGGAGTGCCTGATTACATCCTGTCTGATCGAGGTTCCCAATTTGTCTCTGATCTCTTTGAGGAGACCTGCcaaagatggaacctgagacagAAGTTGACCACGGCCTATCACCCACAGACCAATCTCACTGAGAGAGTAAATCGAACCTTGAAGACAATGATTGCTTCCTATGTAGGGACCCAGCACAAACACTGGGACAAGCACCTTCACGAGTTTCGATTTGCCCTGAATTCTGCTGTGCAAGAGTCCACTGGAGTCACACCTGCAGAGCTGAACCTAAGTCGTCCCCTCCGAGGACCCTTGGATATGGTGCTACAGCCCCAGCAGATTACTCCAGACGCTGCTTGCTATGACCAGGTAGTCCATCTCCATGACTTGAGAGCTCTTGTCTCAAAGAACATGACCCAGGCTCGACTCAAGCAGAAGAGAAATTATGATAAGAACAGACGAGACATGCAGTTTCAGCTTCGTGATCGGGTGTGGCTTCGCTCTCATCCTTACTCGAAAGCTGAACAATTCTTCTCTGCCAAGCTCGCTCCTAAATGGCAAGGACCATATAGGATTGTGGAGCATATGGGCCCTTTGAACTACCGAGTGGTGAAAGAGGACACAGGTGAAGATATGCGCGTTGTCCATGTCTCACGCCTTAAGGCCTGTTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC109094915

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989519.1 True 4745 mRNA 0.48 2 37688750 37693851

Neighbor

gene id symbol gene type direction distance location
LOC118966688 NA coding downstream 1005 37682644 ~ 37687745 (-)
LOC118966685 NA coding downstream 7111 37676381 ~ 37681639 (-)
LOC118966683 NA coding downstream 13217 37670849 ~ 37675533 (-)
LOC110522348 LOC106573397 coding downstream 291116 37380568 ~ 37397634 (-)
pdhx pdhx coding downstream 341107 37287556 ~ 37347643 (-)
LOC118964577 NA coding upstream 367238 38061089 ~ 38061663 (-)
LOC118964575 NA coding upstream 372108 38065959 ~ 38066761 (-)
LOC110520456 NA coding upstream 1321224 39015075 ~ 39019091 (-)
LOC110522389 LOC106573347 coding upstream 1387152 39081003 ~ 39084318 (-)
LOC118966691 LOC106573346 coding upstream 1406974 39100825 ~ 39115097 (-)
G39904 NA non-coding downstream 116890 37571522 ~ 37571860 (-)
G39857 NA non-coding downstream 154692 37533836 ~ 37534058 (-)
G39856 NA non-coding downstream 155753 37532552 ~ 37532997 (-)
G39849 NA non-coding downstream 162347 37525861 ~ 37526403 (-)
G40063 NA non-coding upstream 9928 37703779 ~ 37704012 (-)
G40086 NA non-coding upstream 28096 37721947 ~ 37722176 (-)
G40133 NA non-coding upstream 63345 37757196 ~ 37757454 (-)
G40151 NA non-coding upstream 77134 37770985 ~ 37771257 (-)
G40160 NA non-coding upstream 82705 37776556 ~ 37776770 (-)
G38855 NA other downstream 1177921 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 1279731 36370091 ~ 36409064 (-)
G38045 LOC106573386 other downstream 1966694 35721440 ~ 35722056 (-)
G37976 NA other downstream 2105142 35583292 ~ 35583608 (-)
G37907 NA other downstream 2247422 35440918 ~ 35441328 (-)
G40079 NA other upstream 22689 37716540 ~ 37717033 (-)
G40732 NA other upstream 431429 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 493637 38187488 ~ 38191736 (-)
G41868 NA other upstream 1327954 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 5344877 42852829 ~ 43129052 (-)

Expression


Co-expression Network