LOC110522363


Basic Information

Item Value
gene id LOC110522363
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37794442 ~ 37849251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473300.2
TTGAgcagagactgctgctatagcagGAAGGACACAGCAGCCTTCACCAACGCTCTGTCACTCACTTCCCCCGCTCCAGCCGCGCCACAACCACTACACAGGGAGACGCCGGAAGGGGGAGGTACACAGGACGCACACCAGGAGGAACCACTACGTCTTTCACATGCCACAAGCAATATGACTTTCGGAatacactgtttttttttttttttttgtacctttcAGTCAGTCTCTTAACAcccctccttttctcctcctgcTCTATCCAtctactcccctcctctgctTTTCTACTCCTCCGCTTGTGTTTGAAGGGGGATTCATGCCAAGAGAGAGCCTGGCTTGAATGAGAATCAGCTGCTGGAGCTCTCCAGGTTAGACAGAAAGAAGGAAGTACCAGTAGAGGACTCAAGGAGCATTCTCTGCACCTCTCTGCACCCCCAggatctccatctctatctccttGGGACGCCTCCTGTCCTCCTCACTCCCCAGGGGTCCTGCGTTGCCCATCGCTGTGAGCCTCAGCCAGGGTAAACAATCTAGTGGATGTATTGATATTGTGTTACTGAGAGGAAAAAGAGTTGAGTTCAAGTCTAGGCCTCGAGCTGTTTTGATTCTTCCGCTTCCTTGCACACAGCTGACTTCCAAGAGTTAAAAGGAGTAAACTCATTGGATTTTGagttttattttcattttacTTTGCTGCTGCCCTCGTCGCACTGAAAATTAACCAAATCAACTAAACACTTGAGACCGGTACAATTCCATGACTCTGCATGCTAACTGGACATCTTGCACTGatgaaataCTGTGACTAGTGATGTCCGGCCACCAGACAACCTGTCCACTTgaccccatctcctcctcccttctcctgaCAATATCTGGAGACCATCTACCATTCCTCATGTCCCACATCAACTCATTCCTGACCATTGGCTGCGTACCTTCAGATGGCCAgttgctcccctcctcaagaaaacAACACTCAACCCCTCTGATGTCAAAAACTACAGATCagtatcccttctttcttttccttccaaaacacttgagcgtgctgTCTATGGCCAcatctctcgctatctctctgagaatgatcttcttgaccttaaccagtcaggcttcaaggcAGCTCACTCAACTGAGACAACTCTCCTCTGTCAGGGAGGCTCTTCGCTCTGTCAAAGATGACTCTCTCTCATCTGTTCTCATCCTCATAGATCTATCTGCTGCCTTCAACACCATGAACAGTCAGATTGTCCTCTTCATCCTCTCAGGGCGGGacatctcaggctctgcacactgcTGTATTGCATTCTACCTGGAAGTTTGCTTCAAACAGAGGATCTTTGTCTGCACTCAGCTCTGTCATATCGAAAgtttgggactataaggttctataggcatttttgtcaaaatgttgctattgacatagccttgttcAGTTCAATGTCCTCtacctatatagtactctaaataccctaattcatgttgttaagttcagaataatacaatataaaaattgctgacaccattcaaacaAATGAGGGTTTCGAAAATGAACGCCAACCTTCTCAGAATCATATTTTTGCGGATAGAACCTTTATAATCCCAAGCTCTtgatatcctcacatggtctctcctatcattgctactGTATGTGGATGGTGCTCAACTTCTTTTCTCCTTCTCCACTTCTGATACCCAGGTGGTGACACATCTCTGCATACTTGGCAgacatctcagcttggatgttggCCCACCACCTCAGGCTCAATCTCAACACGatgaagctgctcttcctcctggggaaggcctgcccgctccaAGACATCTCCATCACAGTTGATAACTCCAGGGTGTctccctcccagagtgcaaagaaccttggcgtgaccctggacaacaccctgtcattctctgcaaacatcaagcAGTGATTCACTCCTGCAGGTTCACGCTCTACAACAGCCGTAGAGTATAATctttcctcacacaggaagcagaGCAGGTACTGATCTAGGCACTTGTCATTTCCCGTCTAcactactgcaactctctgttgacTGGGCTCCCCACTTGTGCCTTCAAACCTCTGgtgcctggtgttcaaccttcccaagttctcccatgccACCACGCTCttctgcacactccactggcttccagtcgaagctcacaTAATCTTCAAGACCTTGGTGCTTGCCTATGCAGCAGCAATGGGAACTGtggtcaaaccctacaccccaactgaaacactctgttctgccacctctggtctcttggccctgcCACCCTATTGGAAGGGCAGTTCCCGCTCATCCTTGTCAAAGCTATTCTCTGTCCTAGCATGCCGATGATGGAACAATTTTCACCGTAATGTCAGGACAGCGAAGTCCCTGCCCATCTCCCGATAACTTCTGAAACTTTAAAGAGTATCTCAAatagtggtgggaaaagtacccaattgcctGACAAGTAAAAGTTAAGATGGcgtcatagaaaatgactcacgtAAAGGTGAAAGTCGCCCAATAAAATGCTAATtgtgtaaaagtctaaaagtatttggttttaaatacactTACTGTAtgaatcaaaagtaaatgtaattaaaaaatatatttaagtatcaaaagtaaaagcataACATTTTCAGATTGctaatattaagcaaaccaaatgGCACAAattctttttttttcaatttacagatagccaggggcacagtaAAAAatgcagacataatttacaaacaaagcatttgcatttagtgagtctgccagatcagaggcagtagggatgaccagggatgttctcttgataagtgtgtgaattcgACCATGTTCTTGTCCTGCTattaatgagtacttttgggtgtcagcgAAAATGtgtagagtaaaaagtacaatatttttactaggaatgtagtaaagtagaAGTTGaagttgttaaaaatatgaatagtaatgtacagatacACAAAAAGTGAGTTCCAGAGCCTGTAAAGCTTCATGCACTCTGGATAAATGTTAAATGGCGACCGGTAATGGGCTTCGGATAACCAAAATGTGTAAACAGTATCCTGCATTATATTAAATTCATCTATGCATTTTGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605384, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473300.2 True 3125 mRNA 0.45 3 37794442 37849251

Neighbor

gene id symbol gene type direction distance location
LOC110522323 LOC106573351 coding upstream 597794 37153473 ~ 37196648 (+)
LOC110522315 LOC106573352 coding upstream 665061 37071620 ~ 37129381 (+)
LOC110522265 LOC106573356 coding upstream 1233988 36554747 ~ 36560454 (+)
phrf1 LOC106573357 coding upstream 1256104 36518846 ~ 36538338 (+)
rassf7a LOC106573359 coding upstream 1283311 36441437 ~ 36511131 (+)
LOC110522368 LOC106573348 coding downstream 194834 38044085 ~ 38191930 (+)
LOC118964578 NA coding downstream 467941 38317192 ~ 38319819 (+)
LOC110522396 LOC106573344 coding downstream 1273749 39123000 ~ 39294499 (+)
LOC110522413 LOC106573341 coding downstream 1487890 39337141 ~ 39339608 (+)
unc45a unc45a coding downstream 1493719 39342970 ~ 39352896 (+)
G40153 NA non-coding upstream 21924 37772313 ~ 37772518 (+)
G40142 NA non-coding upstream 28852 37765236 ~ 37765590 (+)
G40089 NA non-coding upstream 70211 37723766 ~ 37724231 (+)
G40062 NA non-coding upstream 90546 37703569 ~ 37703896 (+)
G40047 NA non-coding upstream 100488 37687616 ~ 37693954 (+)
G40250 NA non-coding downstream 38168 37887419 ~ 37887684 (+)
G40254 NA non-coding downstream 42521 37891772 ~ 37892024 (+)
G40517 NA non-coding downstream 166505 38015756 ~ 38015962 (+)
G40559 NA non-coding downstream 207847 38057098 ~ 38057297 (+)
G40561 NA non-coding downstream 208563 38057814 ~ 38058129 (+)
G40150 NA other upstream 22297 37771654 ~ 37772145 (+)
G40149 LOC100136012 other upstream 22974 37770945 ~ 37771468 (+)
G38652 NA other upstream 910550 36842608 ~ 36883892 (+)
G37719 LOC106573365 other upstream 1650480 36141073 ~ 36143962 (+)
rad52 rad52 other upstream 1658588 36133477 ~ 36140940 (+)
LOC110522455 LOC106573334 other downstream 1551912 39401145 ~ 39403331 (+)
LOC110520525 LOC106573323 other downstream 1787637 39636888 ~ 39645220 (+)
G42208 NA other downstream 1798287 39647538 ~ 39648632 (+)
LOC110522607 LOC106573315 other downstream 2031845 39808863 ~ 39882239 (+)
G43208 NA other downstream 2251202 40100453 ~ 40101172 (+)

Expression


Co-expression Network