LOC110520456


Basic Information

Item Value
gene id LOC110520456
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39015075 ~ 39019091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520456
ATGTGCCATCTCTGTGGAGTGGCCCTGAGGACAGACAAAGGTCCAGAGCATGAGGTCCATGGGCTTCTGGATGAGGCCTGCAGGATTGCCCTGTGGAGGATGGGCTGCAAGGCCACCAGCTGGCCAGAGGTCATCCTCAAGGTCTTCAAAGTGGACGTGGCGGGGGACATGGAGACAGTCCAACCCCATCCGCTGCTGGATGTTGGCCATGCGAGGAAGGGGCTTCTGCAGCTTCTCCAAGATCAATGTCCCTGAGTGGAGACCCCACACTACCCACTGCCCCCTTTGAAACCCTCCCTATAGCGGAaagggaggaaaaggaggaatCCCCCTCGTGGAGTCCCAACGCCTAGCCAAGAGGACCAAGTGGGACCTCCAGGACAATGCTGATATTGTTGGGGAGAAGAGAGCctggagaacagagacagagcccCACCAGGGACCTGGCCTTAGACCCTGGATGAGACCCAGCTTCCAGAGAGCTCAGTGGATGAAGAGCATAACTGTCTGCCAGAAAGAGCACCTGATTGCCAGGCTGCTGACCGATAACCTCCCTGTGGACTTCCTGAGGTCAGACACCTATCAGTTGTGTGAACAACTGCTGTTTGAGCCCGTCCAGTCCCCCTGAAGACACCTCTTCTGCCGCAGCTGCATCACTAAATAAATATGCTCTCTGGGCCCCCACTGCCCTGCTTGCACCCTGCCCTGCGCCCCTGTCAGTCTCAATGCCCCGGCTAAGGCCTTCCTTGGGGTGCTGCACTCCCTGCCACTCCTCAGAGAGAGCTGTGGGGAGCGGGTACAGCAGGACTCGTTCAGCGCCCACTGTCTGGATCACCAgctggaagaagaggagggtggcTGTTGGTCTCCAGAGAAGAGCCTGGACAACTTCCTGCCTGTCCATAAACAGGTAGGCCCGAAAGCATCTCTTGTCGCTGACAAGGCACCCCCAGAAGTACCGGTTGAGGGACATAAAGACCCAGGTGAAGGTGGGCGGGAAACGAACACCGATAGGCAGACGAACTGGAGGCCATGTTGCAAGGTTCGAGTCttggtctgCATCCTGCTGTGTGTCTGGCCATCCAGGTCAACATGTTCCTGAGCTACAGCCAGTATCACATGATGTAGTAGTGGGCACCAGATCATCCAGCTCCTGCACACCCTGCGGGCTGCAGAGAAGGAGCTCCTCCCAGGCTACCACCCTTTCGAATGGCAGCCGGCCCTCAAGGTCGTGTCCAGATCCTGCCATGTGGGGATCATTGACAGGCTATCAGGGTGGACCACCTCTGGAGACAACTCCCCAGCGAACAACATCACACGTTGATTCCGATACGATGTGGCCCTGGTGTCGACCTTGAAAGACCTGGAGGAAGACATACGAGGCCCGGAGGACAGCACCTGCACCTCTGGCTTCAGTGTCATGATCGAGGAGTCCTACGATGGCATGGGCAACATCAGTGAGAAGCAAGGTGGAGGACCAGCCATCCTGGAAAAGGCTGTGCATTTCTCCATCACCATCATGTCAGTCTCTATCCAGGCTGAGGGTGAAGATGAGGCAATCACCATCTTCCGGGCGCTCATGCCCATCTCAGAGATGTCTGATGTTTGTGGACGAGTCGGGCCACGAGAGACTCATAGAAATCCTGGGGCACGTGGTGGCCGAAAGGAACACTACGAAGCATAGTcgtctcattctgtctgtggGCGGCCTTTGTCTTTCCATCGGTTTCCACTTCAGGGGCACGGGTAACGTCAAGATGATGGTGTGAGATATAGAGGGTTTGGAGGCTTCAGGCTCCACTTACTGCATGCTGTGTGACGCCACTCAGGCAGAGGCCTCCCACAATATGACTCTCTACTCTATTACTCGCAGCCATGGCGAAAACCTGGAGCGCTACGTACTCTGGAGGACCAACCCTTATTCTGAATGTTGCTGTGAGACTCGGTCAAAGGTGTCTCTGCTAAGCCCTTCATGGAGACCCAGTCCACCCTGCACTGCAACGTCACCGAGTTCTACAAGATCTTCCAGGATGAGATAGGGGAGGTCTACCACAATACCAACCCCAGTCAGCTGGCAGGCCACCCTGAGGAAGAAGATGAAGATGTGGAGGTGGTGTGTGAGCTGGTGCACAAAGCGGAGTGGCAGGAAGCTCTGAGGGAGATGATGGTTCTTTACCTCCAGATGGAGCCTGTGTGGCGCTCCACCTGCTCGGCCAAGGAGTGCCCAGACCAGCTCTGCCGGTATGACTTCAACTCCCAGCGCTTCGTAGAGCTGTTCGCCACTGTCTTCAAGAACAGGTATGACGGCAAGATCACCAACTACCTACACAAGACCTTGGCCCACGTGCCGGAGATCGTGGAGAGGAATGGCTCCATCTGTGTCTGGACCAGCGAGGGGAATAAGTCTGGGAACAAAATTTTCAGACGGTTCAGGAAGATGAACGCTTGCCAGTCCAAGGCCTTTGAGCTGGAGGACGTGCTGAAGCACCACCGGCTCTACAACTCCAAGTACCTGGAGAAGTTCATGGAGTCTCACAAAACTCTGCTAAAGCCGTGTAG

Function

NR:

description
PREDICTED: V(D)J recombination-activating protein 1 isoform X1

GO:

id name namespace
GO:0002520 immune system development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0005488 binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520456 True 2559 mRNA 0.56 2 39015075 39019091

Neighbor

gene id symbol gene type direction distance location
LOC118964575 NA coding downstream 948470 38065959 ~ 38066761 (-)
LOC118964577 NA coding downstream 953412 38061089 ~ 38061663 (-)
LOC118966689 NA coding downstream 1321224 37688750 ~ 37693851 (-)
LOC118966688 NA coding downstream 1327330 37682644 ~ 37687745 (-)
LOC118966685 NA coding downstream 1333436 37676381 ~ 37681639 (-)
LOC110522389 LOC106573347 coding upstream 61912 39081003 ~ 39084318 (-)
LOC118966691 LOC106573346 coding upstream 81734 39100825 ~ 39115097 (-)
man2a2 man2a2 coding upstream 295961 39315052 ~ 39336325 (-)
kip1 kip1 coding upstream 338042 39357133 ~ 39359660 (-)
c1h15orf40 cssa16h15orf40 coding upstream 462510 39481601 ~ 39486010 (-)
G41819 NA non-coding downstream 32840 38982006 ~ 38982235 (-)
G41813 NA non-coding downstream 37200 38977652 ~ 38977875 (-)
G41798 NA non-coding downstream 44985 38969768 ~ 38970090 (-)
G41557 NA non-coding downstream 221342 38793520 ~ 38793733 (-)
G41551 NA non-coding downstream 225754 38789113 ~ 38789321 (-)
G41876 NA non-coding upstream 9112 39028203 ~ 39028428 (-)
G41963 NA non-coding upstream 65851 39084942 ~ 39085154 (-)
G42408 NA non-coding upstream 73146 39092237 ~ 39092455 (-)
G42409 NA non-coding upstream 73441 39092532 ~ 39092743 (-)
G42416 NA non-coding upstream 78047 39097138 ~ 39097342 (-)
G40768 LOC106573348 other downstream 823339 38187488 ~ 38191736 (-)
G40732 NA other downstream 889350 38125280 ~ 38125725 (-)
G40079 NA other downstream 1298042 37716540 ~ 37717033 (-)
G38855 NA other downstream 2504246 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 2606056 36370091 ~ 36409064 (-)
G41868 NA other upstream 2714 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 4019637 42852829 ~ 43129052 (-)
G49774 NA other upstream 6701714 45720805 ~ 45721124 (-)
G49962 NA other upstream 6929867 45948958 ~ 45949951 (-)
G51214 NA other upstream 8045683 47064774 ~ 47236625 (-)

Expression


Co-expression Network