LOC110522389 (LOC106573347)


Basic Information

Item Value
gene id LOC110522389
gene name LOC106573347
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39081003 ~ 39084318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600757.2
CTCAACCACTGAGTAGGGGGGTTTCCACTGTAGTGGGGAAGTGGAGCGCAACACGGAGGGAAATATTTACAGTGTCATattccatctctctgtgtgtgtgtgttcctgtggtaCACTGGCAGTGCGTGTCACTGTATCGGTGTGTTTGGTAGCACTGAGCTCATTGTACACTAGTCCCTCTCACACGTCTGACTAGCTCTTGTTCTACTTATGCCAGGAGGAATTTACACAAAGCTTCATAGCACAATATAAAAGCCCTCTGTGTCAGTATGAAGGTGTTTGAGGTGGGAGACTCGGTGAGTCGGTTCAGGCTGGCTGAGTCGTGTGTGGGGCTGGCAGGGTGTCTCTGTGTGGCCTACTCTGTGTGGACCCCTTGCTGGCTCAATGACAAGGGACTGTGGACTAATGGCGACAACAGCACCAACACTGACATTGACCAGACCAGGGGCATTATCTTTAACGCCCTGGAGGCAGAGCAAGTGTTTGGTGTGCTGTCTTTCTTCATGGCTGTGAGTTCTGGAGCTCTGTGTCTGGTGTTCGCCCTCTGCTGGACGTCCCAGACGGTGCGCTCCTACTCCAACACCCGCTCTCTACTTATGGCAGGCCAGGCCCTCTACCCCACTGTCCTGCTGCTCCTCGTTTTGGGACCCACAGgATTTTTCTTCCTGCTCAGCTGGTCCCTCTTCACCTACCAGCACTGGGTGGAGATCAATGATGACTTCACCTGCCTGGGCTCCTCCTATTGGATGGGCGCCCTGGGCTGGGCCCTGCTATTGATTGCTCTGCCCGTGGTCTTCCTGGTGGAGCAATGTGTGGTCCCGGACATCCTGACGGACCTCATGAAGGCCAGCGAAGGGTGGCGGCGTGCCTCTGAGATACCGCACGCCAAACGCTCGTTCAGAGAAAGCCATCAACATTGTCAAGAAGACGAGAGTCATGAAGACGTAGAGAGGAGGCTGAAGATGTACATGTCAGTGCACtgagaggaggaatggaagaCAGAGAATTAGTGAAGCCTTTTCAGGCTCAGAGACTGAGCTGACTGCagaactggactggactggacataCAGCTGATAGATGTCCTGTTCACACTAGCAGCACCAGGGAGAGAAGCTTCTCGTGCCTGTCTGGATCAGAGACTGACTGCTCTCCTGTAGGAGAACGCTCCCAGACACACTCTGAGAATGTGATATTAGACAAAAATGCCAATGCTGTGATAGTGTTCTTGTcagtctttgttgttgtttgttgccAAGCAAGGTTTTCCTTCCTTATAAAGGAAATATTTGTTACAGTAGCGCCCTCATGTGGTGAGTATTACTAAGGTTTGTatgttgaaaaaaaaatgaaaaaaatgaaataaatgggGGGTTGTTCAGATGCAAAGGACCACTTCTTATAGAATTTAGAGGAATTAGGCCTAATTATGTAATATATTCACAAAAGCGGTACATTACAGTTAAACTAATGAACATTCAAAATAGGCCTACGTCTCATTTCAATCTAAGTGTGACTTTGAATATCTTCATAAGTTAAATAAGTGTGTAATACATTCTTGAAGttgtacatttttaaaaactgaTTAATAAATTGCCACTGTTAATGTA

Function

NR:

description
uncharacterized protein LOC110522389

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600757.2 True 1609 mRNA 0.48 4 39081003 39084318

Neighbor

gene id symbol gene type direction distance location
LOC110520456 NA coding downstream 61912 39015075 ~ 39019091 (-)
LOC118964575 NA coding downstream 1014398 38065959 ~ 38066761 (-)
LOC118964577 NA coding downstream 1019340 38061089 ~ 38061663 (-)
LOC118966689 NA coding downstream 1387152 37688750 ~ 37693851 (-)
LOC118966688 NA coding downstream 1393258 37682644 ~ 37687745 (-)
LOC118966691 LOC106573346 coding upstream 16507 39100825 ~ 39115097 (-)
man2a2 man2a2 coding upstream 230734 39315052 ~ 39336325 (-)
kip1 kip1 coding upstream 272815 39357133 ~ 39359660 (-)
c1h15orf40 cssa16h15orf40 coding upstream 397283 39481601 ~ 39486010 (-)
si:ch211-59o9.10 LOC106573327 coding upstream 445850 39530168 ~ 39543311 (-)
G41876 NA non-coding downstream 52575 39028203 ~ 39028428 (-)
G41861 NA non-coding downstream 63453 39016782 ~ 39017550 (-)
G41819 NA non-coding downstream 98768 38982006 ~ 38982235 (-)
G41813 NA non-coding downstream 103128 38977652 ~ 38977875 (-)
G41798 NA non-coding downstream 110913 38969768 ~ 38970090 (-)
G41963 NA non-coding upstream 624 39084942 ~ 39085154 (-)
G42408 NA non-coding upstream 7919 39092237 ~ 39092455 (-)
G42409 NA non-coding upstream 8214 39092532 ~ 39092743 (-)
G42416 NA non-coding upstream 12820 39097138 ~ 39097342 (-)
G42418 NA non-coding upstream 15814 39100132 ~ 39100373 (-)
G41868 NA other downstream 58978 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 889267 38187488 ~ 38191736 (-)
G40732 NA other downstream 955278 38125280 ~ 38125725 (-)
G40079 NA other downstream 1363970 37716540 ~ 37717033 (-)
G38855 NA other downstream 2570174 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3954410 42852829 ~ 43129052 (-)
G49774 NA other upstream 6636487 45720805 ~ 45721124 (-)
G49962 NA other upstream 6864640 45948958 ~ 45949951 (-)
G51214 NA other upstream 7980456 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 8204621 47288939 ~ 47289681 (-)

Expression


Co-expression Network