LOC110522511 (LOC106573329)


Basic Information

Item Value
gene id LOC110522511
gene name LOC106573329
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39543494 ~ 39547739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600958.2
TGATAACGGCGCTGTCAATGTAAACAAACCcaaaagaaagaagaagagacGCCACTCAATGTACAATAAATATTTTCCTACAAAAAGCTTTGCATACTGATTGATAGCAGGGACTGTTATTAGTCAAAAATGGGTGGGTTCTTCTCCAGTCTTTTTTCTGGCCTGTTTGGCACCAGGGAAATGAGGATACTGATCCTGGGGTTGGATGGAGCTGGGAAAACCACAATCCTTTACAGACTTCAAGTTGGGGAGGTCGTCACCACTATTCCCACCATTGGTTTCAACGTGGAAACGGTGACATACAAGAATCTGAAGTTCCAGGTGTGGGATCTTGGAGGGCAGACCAGTATTAGgcCTTACTGGCGCTGCTACTACTCTAACACTGATGCTGTTATCTATGTAGTGGACAGCAGTGACAGGGACAGGATGGGAATATCCAAGTCTGAACTGGTGGCTATGCTTGAGGAGGAGGAGCTGAAGAAGGCTATACTGGTGGTGTTTGCCAACAAGCAAGACATGGAGCAGGCCATGACTCCCACTGAGGTCGCCAATTCCCTGGGCCTGCCAGCACTCAAAGACAGAAAGTGGCAGATCTTCAAGACCTCCGCCACCAAGGGAACAGGGTTGGATGAGGCCATGGAATGGCTGGTGGAGTCTCTCAAGAGTGGACAGTAACCTCAGCCTAACACCATGCAAATAAATGTGACTTCCCGCCGCATATTTATGCTAAATTCATTGTTATAATCTTCGTAGGAGCATTGttaaatctctgagctgtttcccaaaaccatcgttACTAAAGTTGCACTTGAACACGCTCATTATTTACCGACTGCCTCACCACTCGTAGAACAGTTAAGTGCATCGTTATGTTTTTGACCTTCTGTGTCACTTTATTTACAGAAGATCTCTGCTAAACATAGAATCAAGATGTTCATCTCTCTGATTATGACTGccgataacttcagaacaaagttgactacaaatacaaagttgctAAAGTCTTTGCAATTATGACAAGCAAGTAAGTGAAGGATAAAAATATGCTTCAAATTAAAACCGAGATAACTGCATTAAAAGATAAATAGGCTACATGGGTCTATATATTTCAACCTAATTGAAATCAatgtcatgttcaatcaatttaatTCTATTTTGCCAATTATTGTCTGTATCTGTAATTTTTGCCtcaatatattttgatgtgtaaCAACATGTGCGCAATGATGTGCTCAATGTGATTTTGTGCATTATTGGGTAAGCATTATAAGTtgcctcaatatttgcagccaaCCATAGGTGGTAATATCTTTCTAGGAGCTGATGCATCATCAGGATTTTGGAATATAATTTGAAAGGAGAAAGTTGATTTGAGAGGAGCGCTGCTTTTGTTTCGATCCTATCAGTGTCAACACATGGTCTAACAACGCGTTTAGTGAATGTTCATTCTGCATGTTGTTTTGAGAAACGGACGTTACATCTTTGGCCGTTGTAAGAATGAGGCATCATTAAAACACTCTTAAACCAAGTTCCATGGCTATCAGGAAACCAGGCCCTTAACTGAGTGGTTTGCCTTGTTGCAGGGGACATCCTAAAGATGGACTTTTTTATTGCTGTCCCTGAGTCTGAAGTTTTACATTAGCTTCCATTTAGTTCTTATCAATTCCCCTTTTCTATTCCTAGTATATCTAGCTAGGTGGACTCGTTTTtgagtgtatagtgtgtgtgtgtatgtatgtatatatataacatataaagttatggatatgtggttgtctgttttttttcttgtGTGCTCATTATTCCAATACTCAGTATTGGTCCTGATAAGTTGGGTTAATTGATTTTTAATATTAATTGATGTACCTTGATAATGGCGTTAGTGATAATGTAAATACACAATTATTAATTAAATAAATGAACATCGTATTTGCAAGTGA

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 1

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0007030 Golgi organization biological_process
GO:0009404 toxin metabolic process biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0034067 protein localization to Golgi apparatus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
K07942 ARL1; ADP-ribosylation factor-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600958.2 True 1940 mRNA 0.40 6 39543494 39547739

Neighbor

gene id symbol gene type direction distance location
si:ch211-59o9.10 LOC106573327 coding downstream 183 39530168 ~ 39543311 (-)
c1h15orf40 cssa16h15orf40 coding downstream 57485 39481601 ~ 39486010 (-)
kip1 kip1 coding downstream 183834 39357133 ~ 39359660 (-)
man2a2 man2a2 coding downstream 207169 39315052 ~ 39336325 (-)
LOC118966691 LOC106573346 coding downstream 428397 39100825 ~ 39115097 (-)
LOC110522519 LOC106573326 coding upstream 5692 39553431 ~ 39563229 (-)
LOC110522541 LOC106573325 coding upstream 33098 39580837 ~ 39583183 (-)
LOC110522551 LOC106573324 coding upstream 48806 39596545 ~ 39618668 (-)
LOC110522570 NA coding upstream 170303 39718042 ~ 39735940 (-)
trnar-ucg NA coding upstream 193674 39741413 ~ 39741485 (-)
G42695 NA non-coding downstream 27568 39515068 ~ 39515926 (-)
G42674 NA non-coding downstream 50629 39492631 ~ 39492865 (-)
G42673 NA non-coding downstream 50973 39492311 ~ 39492521 (-)
G42670 NA non-coding downstream 54089 39489066 ~ 39489405 (-)
G42668 NA non-coding downstream 55046 39488032 ~ 39488448 (-)
G42693 NA non-coding upstream 44455 39592194 ~ 39643822 (-)
G42835 NA non-coding upstream 241231 39788970 ~ 39794020 (-)
G42863 LOC106573315 non-coding upstream 284278 39832017 ~ 39832245 (-)
G42866 NA non-coding upstream 287990 39835729 ~ 39835958 (-)
G41868 NA other downstream 521469 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1351758 38187488 ~ 38191736 (-)
G40732 NA other downstream 1417769 38125280 ~ 38125725 (-)
G40079 NA other downstream 1826461 37716540 ~ 37717033 (-)
G38855 NA other downstream 3032665 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3490989 42852829 ~ 43129052 (-)
G49774 NA other upstream 6173066 45720805 ~ 45721124 (-)
G49962 NA other upstream 6401219 45948958 ~ 45949951 (-)
G51214 NA other upstream 7517035 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7741200 47288939 ~ 47289681 (-)

Expression


Co-expression Network