LOC110520525 (LOC106573323)


Basic Information

Item Value
gene id LOC110520525
gene name LOC106573323
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39636888 ~ 39645220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597943.2
CTTCAGCCTGAGAAGTATGTCGACATCTGCCATTACATTTCTCCAGGTTGTTGAAGCTATATTTTCTGGACGGTTACAGTGATATGGGCATAACAACTGGATCCATCCACCACCTGACTCAACTGGTCGAAGGTGTATCTTATAGTTCTGAGATTGGCCCCAAAGCATACTTGAAAAGGATAACCAAGACCAGACAAGATGGAGATGCTCAACCTCACCAACTACTCCAACCTCAGCTCAGACAATGAAAGCAGCAGTCTCTTCTCTGGGAGTCCCTATAAGACGGTAGAGATCGTCCTCATCATCCTGGTGGCCGGGTCACTCAGCCTCGTCACCATTATTGGCAACATCCTGGTCATGCTCTCCATAAAGGTCAATAGGAACCTCCAGACTGTCAACAACTATTTCCTGTTCAGCCTAGCCTGTGCTGACCTCATTATTGGCCTGTGCTCCATGAACCTCTACACTGTCTACATTGTGATTGGACACTGGCCCTTAGGCCCGGTCGTGTGCGACCTGTGGTTGTCCATTGATTACGTGGTCAGCAACGCCTCAGTTATGAACCTCCTCATCATTAGCTTTGACCGCTACTTCTGCATCACCAAGCCTCTCAGCTATCCGGTGCGCCGCAGCACCATGATGGCGGGGATGATGATTGCGGCGGCCTGGGTGCTGTCATTCGTACTATGGGCTCCTGCCATCTTGTTCTGGCAGTTCTTCGCGGGTGGGCGGACGGTGCCGCCTGGCGAGTGCTACATCCAGTTCTTCTCCAACGCAACAGTGACGTTTGGCACGGCCATCGCGGCCTTCTACCTGCCTGTGGCCATCATGATCAGTCTCTACTGGCGCATATCCAAGGCCAGTCGCAGCCGGGTACGGAGGAACAGCAGGAAACCTTTAGGGAATAGCCTGGGAGAAGGCCCATCGCAGAGCCAGGAGGATGGGTGCAGGGCCCAGCCCAATGACTGCACTGtgactggggaggaggaggaggaggagggtggggatggagagaaggtCGGGGAGGGGGTCCAGCAGCAGAATGACAGGGAGCCCTGCAGAGGGGAAGGGCCAGACAGAGATAGCTCTACCACAACAGTCAGCAACCTTGCCTCATCATCCAATCAAAAGAAAGAGCCTGGCCTATCACAGAAGGGGTCAAACGGTGAGGCCAAATCCAGCCAGACGCTGTGTTGCTATCAGAACCAGGCCAAAGGCTGTGGGCCCAAACTCTCCTGTATCAGAAGCAACTCCCGGCCTGAGGGAGAGACATACAAAGCCACGCACAGCAACACAGATTCCACCCCTGCAACAGAGAAACACAGCCTGGTGACACGGACGCTGTTAAAGGTGACAAAGAGGAACTCCAAGCAGAGCTCCAAGAGGAAGACGAAGAAGAAAAAGGGCCCTCCGTCCCGGGAGACGAAGGTGACGCGCACCATCATGGCCATTCTGGTGGCGTTCGTGGCCACGTGGACACCTTACAATGTGATGGTGCTCATCAACACCTTCTGCTCCAGCTGCATCCCCAACTCGCTGTGGACCATTGGCTACTGGCTGTGTTACATCAACAGCACCGTCAACCCGGCCTGCTACGCCCTGTGCAACACCACCTTCAAGAACACCTTCAGACAGCTGCTGCTCTGCCAGTACAGGAACATACGCACGATGAGGTCATGAGGACCAGGGGGTCAGGGGTCATGGCTGCGAAGCTGCTGTCTTGATTCACTCAGATACTCACAGATCTGATAGGACCGGATAGGTGAAAGTAGGTGAAGCTATTGTTCAGACCTACCCAGTCATCTTTGATCTGTGCAGAGGCTGAACCAGAGCAGAAGGAGAGGGGATACAACTTCTTAGAATGAAATGCAGCTCAGATGTGTATCTATCTATGTTGGTTGTGGTTTTATATGAGTAGGTTCCAAATTAGACTGCTATTCTCATGAAACGTTTGGTTTCAACATGGTGGCTAAAACTCGGTTTACATAATGGCTGTCTATGTTATGTTTTGGGTATGTGACATGTCTACTCTATGGTATGAATTTGGATATATCGGGTATGTCTGGGTGATTCTGTCTGATGTCTTGTGATTGCTTGTTGCCCAGTGCTTGTTTGATAAACAGGTGCAGTGGCAGAGGTTTGCTCAGAACTGTTTCTGCACTGTTCAGACACTTAAGGTTTGTTTGTTGATATACTATGACACATGGTTATAGATGTTcccctatgtacagttgaagtcagaagtttacatacaccttagccaaatacatttaaactcagttttcacaattcctgacatttaatcctagtaaaaattccccatctt
>TU47442
CAAAGTCGCCCTTTGTCCTTCAGCCTGAGAAGTATGTCGACATCTGCCATTACATTTCTCCAGGTTGTTGAAGCTATATTTTCTGGACGGTTACAGTGATATGGGCATAACAACTGGATCCATCCACCACCTGACTCAACTGGTCGAAGGTGTATCTTATAGTTCTGAGATTGGCCCCAAAGCATACTTGAAAAGGATAACCAAGACCAGACAAGATGGAGATGCTCAACCTCACCAACTACTCCAACCTCAGCTCAGACAATGAAAGCAGCAGTCTCTTCTCTGGGAGTCCCTATAAGACGGTAGAGATCGTCCTCATCATCCTGGTGGCCGGGTCACTCAGCCTCGTCACCATTATTGGCAACATCCTGGTCATGCTCTCCATAAAGGTCAATAGGAACCTCCAGACTGTCAACAACTATTTCCTGTTCAGCCTAGCCTGTGCTGACCTCATTATTGGCCTGTGCTCCATGAACCTCTACACTGTCTACATTGTGATTGGACACTGGCCCTTAGGCCCGGTCGTGTGCGACCTGTGGTTGTCCATTGATTACGTGGTCAGCAACGCCTCAGTTATGAACCTCCTCATCATTAGCTTTGACCGCTACTTCTGCATCACCAAGCCTCTCAGCTATCCGGTGCGCCGCAGCACCATGATGGCGGGGATGATGATTGCGGCGGCCTGGGTGCTGTCATTCGTACTATGGGCTCCTGCCATCTTGTTCTGGCAGTTCTTCGCGGGTGGGCGGACGGTGCCGCCTGGCGAGTGCTACATCCAGTTCTTCTCCAACGCAACAGTGACGTTTGGCACGGCCATCGCGGCCTTCTACCTGCCTGTGGCCATCATGATCAGTCTCTACTGGCGCATATCCAAGGCCAGTCGCAGCCGGGTACGGAGGAACAGCAGGAAACCTTTAGGGAATAGCCTGGGAGAAGGCCCATCGCAGAGCCAGGAGGATGGGTGCAGGGCCCAGCCCAATGACTGCA
>TU47440
ACAGGGAGCCCTGCAGAGGGGAAGGGCCAGACAGAGATAGCTCTACCACAACAGTCAGCAACCTTGCCTCATCATCCAATCAAAAGAAAGAGCCTGGCCTATCACAGAAGGGGTCAAACGGTGAGGCCAAATCCAGCCAGACGCTGTGTTGCTATCAGAACCAGGCCAAAGGCTGTGGGCCCAAACTCTCCTGTATCAGAAGCAACTCCCGGCCTGAGGGAGAGACATACAAAGCCACGCACAGCAACACAGATTCCACCCCTGCAACAGAGAAACACAGCCTGGTGACACGGACGCTGTTAAAGGTGACAAAGAGGAACTCCAAGCAGAGCTCCAAGAGGAAGACGAAGAAGAAAAAGGGCCCTCCGTCCCGGGAGACGAAGGTGACGCGCACCATCATGGCCATTCTGGTGGCGTTCGTGGCCACGTGGACACCTTACAATGTGATGGTGCTCATCAACACCTTCTGCTCCAGCTGCATCCCCAACTCGCTGTGGACCATTGGCTACTGGCTGTGTTACATCAACAGCACCGTCAACCCGGCCTGCTACGCCCTGTGCAACACCACCTTCAAGAACACCTTCAGACAGCTGCTGCTCTGCCAGTACAGGAACATACGCACGATGAGGTCATGAGGACCAGGGGGTCAGGGGTCATGGCTGCGAAGCTGCTGTCTTGATTCACTCAGATACTCACAGATCTGATAGGACCGGATAGGTGAAAGTAGGTGAAGCTATTGTTCAGACCTACCCAGTCATCTTTGATCTGTGCAGAGGCTGAACCAGAGCAGAAGGAGAGGGGATACAACTTCTTAGAATGAAATGCAGCTCAGATGTGTATCTATCTATGTTGGTTGTGGTTTTATATGAGTAGGTTCCAAATTAGACTGCTATTCTCATGAAACGTTTGGTTTCAACATGGTGGCTAAAACTCGGTTTACATAATGGCTGTCTATGTTATGTTTTGGGTATGTGACATGTCTACTCTATGGTATGAATTTGGATATATCGGGTATGTCTGGGTGATTCTGTCTGATGTCTTGTGATTGCTTGTTGCCCAGTGCTTGTTTGATAAACAGGTGCAGTGGCAGAGGTTTGCTCAGAACTGTTTCTGCACTGTTCAGACACTTAAGGTTTGTTTGTTGATATACTATGACACATGGTTATAGATGTTcccctatgtacagttgaagtcagaagtttacatacaccttagccaaatacatttaaactcagttttcacaattcctgacatttaatcctagtaaaaa

Function

NR:

description
muscarinic acetylcholine receptor M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597943.2 False 2326 mRNA 0.51 4 39636905 39645220
TU47442 False 987 TUCP 0.36 3 39636888 39643143
TU47440 True 1270 TUCP 0.48 2 39643219 39645209

Neighbor

gene id symbol gene type direction distance location
LOC110522487 LOC106573330 coding upstream 118546 39501905 ~ 39518359 (+)
LOC110522473 rs17 coding upstream 164079 39466156 ~ 39472826 (+)
LOC118966769 NA coding upstream 167939 39468837 ~ 39468966 (+)
LOC118966770 NA coding upstream 169742 39467032 ~ 39467163 (+)
LOC110522465 LOC106573333 coding upstream 173331 39404300 ~ 39463574 (+)
LOC110522559 LOC106573321 coding downstream 35398 39680618 ~ 39694575 (+)
polg polg coding downstream 96651 39741871 ~ 39754195 (+)
trnar-acg NA coding downstream 111160 39756380 ~ 39756452 (+)
fbxo31 LOC106573317 coding downstream 120968 39766188 ~ 39790046 (+)
LOC110522607 LOC106573315 coding downstream 163643 39808863 ~ 39882239 (+)
G42183 NA non-coding upstream 92122 39543510 ~ 39544783 (+)
G42172 NA non-coding upstream 149004 39487557 ~ 39487901 (+)
G42171 NA non-coding upstream 149610 39487022 ~ 39487295 (+)
G42163 NA non-coding upstream 160056 39476576 ~ 39476849 (+)
G41990 NA non-coding upstream 525874 39110821 ~ 39111031 (+)
G42208 NA non-coding downstream 2367 39647538 ~ 39648632 (+)
G42261 NA non-coding downstream 17248 39662468 ~ 39662793 (+)
G42287 NA non-coding downstream 54928 39700148 ~ 39731442 (+)
G42319 NA non-coding downstream 143015 39788235 ~ 39825280 (+)
G42370 NA non-coding downstream 192912 39838132 ~ 39838564 (+)
LOC110522455 LOC106573334 other upstream 233575 39401145 ~ 39403331 (+)
G40150 NA other upstream 1864760 37771654 ~ 37772145 (+)
G40149 LOC100136012 other upstream 1865437 37770945 ~ 37771468 (+)
G38652 NA other upstream 2753013 36842608 ~ 36883892 (+)
G37719 LOC106573365 other upstream 3492943 36141073 ~ 36143962 (+)
G43208 NA other downstream 455233 40100453 ~ 40101172 (+)
G43352 NA other downstream 560066 40205286 ~ 40205705 (+)
LOC110522691 NA other downstream 1100520 40745740 ~ 40754201 (+)

Expression


Co-expression Network