XLOC_019742


Basic Information

Item Value
gene id XLOC_019742
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 33465275 ~ 33477963 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038863
gtaagttaacccagctttctggaataccccccaggtTGCTCAATCGATCTCAGACAATTTGATCCCACTGATGCAGACATGGCGGACAAGGATCCGTTCAGGCAGCTGAAAGATCTGTCTCTGCTGAAAGACCAGCTCGAGGACATTCAGCGGCGTGTTGAGGGAGAAGTTGGTGTTGGCATCCCACAGGGTGGAAGTGTGCTCAGTTCTCCCTTCCTCAAAGGTTTTCTGGCTGGTTATGTGGTGGCGAAGCTCCGTTCCTCCGCCATTCTGGGAGTTCTTATAGGGACCTGCACAGGCATCTACGCCGCTCAGAGCTATCAAGTGCCTAACATCGAGAACACCATTAAAAACTACTTCAGCTCATTCAAGAAAAGATAAAAACGGCCTCATTCAGACACTTCAACATGTACCTCCTCATCTGAAGGTGCCAAACATCAAACCATATACAGTAACTGGATGGTGTTATTCACACTATAATAATTGGGTTGCTCATTTTAGTTTAGgttattttctgtttaaaattaGCTGCTTGTTTTTGAATACCTGTATTATGATGGTAAAAATGGCCAAAGCTTTGAATCTGTTGTCATTAGTGCTTCTTCCCATGTCAGTGCATGCAAGTTCTTTCTGttacatgaatatttttctcaccaattatgtttttataaatatataaataggtCTGCACTAAAAAGAGGAGAACAATCAGACACAACAGACTCTAATGTCTATCATGGAACAATTTGTGTGTGTACCTGACGATTGTCAGAGGTTGCTGGAGTTGAGTTGctgaaattatattgttttatatcattgttgaataaatgaatgttgcactTT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0097526 spliceosomal tri-snRNP complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038863 True 843 lncRNA 0.41 3 33465275 33477963

Neighbor

gene id symbol gene type direction distance location
XLOC_019741 rbm22 coding downstream 235325 33211306 ~ 33229950 (-)
XLOC_019740 NA coding downstream 318750 33145252 ~ 33146525 (-)
XLOC_019739 CU019662.2 coding downstream 328192 33136948 ~ 33137083 (-)
XLOC_019738 CU019662.1 coding downstream 338578 33093331 ~ 33126697 (-)
XLOC_019737 zgc:194629 coding downstream 375071 33058625 ~ 33090204 (-)
XLOC_019743 NA coding upstream 159199 33637162 ~ 33646880 (-)
XLOC_019744 ebf1b coding upstream 247016 33724979 ~ 33995710 (-)
XLOC_019745 rnf145b coding upstream 523749 34001712 ~ 34032650 (-)
XLOC_019746 BX510996.1 coding upstream 603755 34081718 ~ 34101917 (-)
XLOC_019747 alg13 coding upstream 755529 34233492 ~ 34261784 (-)
XLOC_019734 NA non-coding downstream 804835 32655957 ~ 32660440 (-)
XLOC_019727 NA non-coding downstream 1186933 32126914 ~ 32278342 (-)
XLOC_019755 NA non-coding upstream 2167575 35645538 ~ 35650096 (-)
XLOC_019757 NA non-coding upstream 2576521 36054484 ~ 36055407 (-)
XLOC_019765 BX649250.1 non-coding upstream 3594988 37072951 ~ 37073080 (-)
XLOC_019768 NA non-coding upstream 4100783 37578746 ~ 37582114 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G40772 NA unknown CI01000006 null 475465 ~ 479194 (+)