XLOC_019744 (ebf1b)


Basic Information

Item Value
gene id XLOC_019744
gene name ebf1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 33724979 ~ 33995710 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038864
CAGGTTTTTCCTCAAGTTTTTCCTGAAATGCAATCAGAACTGTCTGAAGAATGCAGGAAATCCACGAGACATGCGCCGCTTTCAGGTGGTTGTGTCAACGACAGTGAGTGTAGAAGGACACGTTTTGGCTGTTTCAGACAACATGTTTGTGCACAACAACTCCAAACATGGCAGACGAGCTCGACGACTGGACCCATCAGAAGGAACGCCATCATATTTGGAGCATGCTGCACCTTGTATCAAAGCCATTAGTCCCAGTGAAGGCTGGACAACAGGAGGTGCTACTGTCATCATCATTGGAGACAACTTCTTTGATGGATTGCAAGTCATCTTTGGAAGCATGTTGGTCTGGAGCGAGCTCATCACACCTCATGCAATCAGAGTTCAGACCCCTCCTCGCCACATTCCTGGGGTGGTAGAGGTCACACTCTCCTATAAGTCCAAACAGTTTTGCAAGGGCACACCAGGAAGATTCATCTACACAGCCCTGAATGAGCCCACCATAGACTATGGTTTTCAGCGGTTACAGAAAGTGATACCTCGACATCCGGGAGACCCTGAACGCTTGCCAAAGGAGGTGATTTTGAAAAGAGCAGCAGATCTGGTGGAATCGCTTTATGGGATGCCTCATAATAACCAGGAAATCATTCTTAAAAGAGCGGCAGACATTGCTGAGGCCCTGTATAATGTGCCACGAAGCCACAACCAGCTCACTGGTCTCACTAACAGCTCTGTCCATACAAGCATGATGGGAGGTAATTCCTTTACTGGGCAGCTTGCCGTGAATGTCTCAGAATCATCTCAAGGTGGAAACCAGGGTTTCGGTCGTAACACAAGTAGTGTATCACCACATGGCTATGTACCCAGTTCAACCCCTCAGCAGAGCAGTTACAGTACAGTATCTACTAGCATGAATGGCTATGGTAACAGTGGCATGACCAACCTGACTGGCTCCCCAAACTTCTTGAATGGCTCTGCTGCCAATTCACCCTACGCAATTGTCCCCTCCAGCCCCACCATGGCTTCCTCCACCAGCCTACCCTCAAACTGCAGCAACTCCTCTGGAATCTTCTCCTTCTCTCCGGCAAACATGGTTTCAGCTGTGAAACAAAAGAGTGCTTTTGCTCCTGTCATTCGACCACAATCTTCACCTCCACCTACATGCACCAGCACCAATGGAAATGGTGTTCAAGTTATCCCTGGAATGATTGTTCATCAGATGTAGTGAACATTTAAGCATGTGTGTGAGAAAAACTACAAACTCAGGCCCTTTTTAAACATTCTTCTTTGAAACAAAAAGATACAGTGAGAgaacaatattaaatattgaaCTGAGCTGTTGTACCTCTCTGTTTTTGATGTTTCAATTTGTACTCACCTTTTAGACACTTTTTAAGATAATGAGCAATGGCACAGACTAGCTCACCTGCCCATCTACACTATAATGTGAgaggtatatatttattttttttaagaaatgcagTTACTCATTTGCCctcatttttgtgttttgtgtgtatttttatgaAATAATCTGACACAATGTTGCAGTGTTTTCTATTAAtgattcaactgtaaataaaaaccAAACACCAAACTATTTTCAAGCAGA
>TCONS_00038865
CTTTTGCCTTTGGACCGCCTCTCCCGTCCCTCCTTCTAGCTTCTGTGGCTGCTATAAGCTCGTGTTTATTTTCCTCTCACTTAAGGAAAGGATTGATTCCTTTGGGACGGGAAATAAATCACTTCAGTTTGACCAAGGGTGAAGGATTTGGGGATCCTctagatttactcactttatctgtttattttatctgtttttttgttcTGGCAGGAAAAAAACGACGATAAAAGTTGTAGGACATGATACTAGCCTATTTGATAAGAGATCTGCTTGATCGTTGTTTGAAAGAAACGTCGGCGCAGATTATAAATCATTTCGTATTGTTTCCACTGTGCGTCTTGGTGACACCGGGATCTGTCTAGCTTTgccagactctctctctctctctctctctctctctctctctcgctctctctctctctctctctctcgctaacgcacacatacacgcacacgcgCAGGCGCGCGCAATAAGGGTACCTGAGAACACCATTAACGGGAAGAGAAACTGAGAAATCTAGGTTTCATGTTTGGGATTCAGGAGAGCATCCAAAGGTGTGGGAGTATTTTGAAAGAAGAACCCATCGGAGCCGGCATGAACACTGTCCGAACATGGATTCAAGGCGCCGGGGTGCTGGATGCGAACACGGCCGCGCAGAGTGGAGTGGGACTGGCCCGTGCGCACTTCGAGAAACAGCCGCCCTCAAATCTTCGGAAATCCAACTTCTTTCACTTTGTTTTAGCTCTTTATGATCGACAAGGTCAGCCGGTGGAAATAGAGAGAACCTCCTTTGTCGGATTTGTTGAAAAAGAGAAGGAGACTACAGGAGAAAAGACAAATAATGGGATACATTACAGACTGCAACTTCTCTACAGCAACGGCATCAGAACAGAACAGGATTTTTATGTAAGACTAATTGACTCCATGACTAAACAGCCCATCATCTACGAAGGTCAAGACAAGAACCCAGAGATGTGCCGTGTACTCCTGACTCATGAAATCATGTGCAGTCGATGCTGCGACAAAAAGAGTTGTGGAAACCGCAATGAGACACCCTCTGATCCAGTCATCATTGACAGGTTTTTCCTCAAGTTTTTCCTGAAATGCAATCAGAACTGTCTGAAGAATGCAGGAAATCCACGAGACATGCGCCGCTTTCAGGTGGTTGTGTCAACGACAGTGAGTGTAGAAGGACACGTTTTGGCTGTTTCAGACAACATGTTTGTGCACAACAACTCCAAACATGGCAGACGAGCTCGACGACTGGACCCATCAGAAGGAACGCCATCATATTTGGAGCATGCTGCACCTTGTATCAAAGCCATTAGTCCCAGTGAAGGCTGGACAACAGGAGGTGCTACTGTCATCATCATTGGAGACAACTTCTTTGATGGATTGCAAGTCATCTTTGGAAGCATGTTGGTCTGGAGCGAGCTCATCACACCTCATGCAATCAGAGTTCAGACCCCTCCTCGCCACATTCCTGGGGTGGTAGAGGTCACACTCTCCTATAAGTCCAAACAGTTTTGCAAGGGCACACCAGGAAGATTCATCTACACAGCCCTGAATGAGCCCACCATAGACTATGGTTTTCAGCGGTTACAGAAAGTGATACCTCGACATCCGGGAGACCCTGAACGCTTGCCAAAGGAGGTGATTTTGAAAAGAGCAGCAGATCTGGTGGAATCGCTTTATGGGATGCCTCATAATAACCAGGAAATCATTCTTAAAAGAGCGGCAGACATTGCTGAGGCCCTGTATAATGTGCCACGAAGCCACAACCAGCTCACTGGTCTCACTAACAGCTCTGTCCATACAAGCATGATGGGAGGTAATTCCTTTACTGGGCAGCTTGCCGTGAATGTCTCAGAATCATCTCAAGGTGGAAACCAGGGTTTCGGTCGTAACACAAGTAGTGTATCACCACATGGCTATGTACCCAGTTCAACCCCTCAGCAGAGCAGTTACAGTACAGTATCTACTAGCATGAATGGCTATGGTAACAGTGGCATGACCAACCTGACTGGCTCCCCAAACTTCTTGAATGGCTCTGCTGCCAATTCACCCTACGCAATTGTCCCCTCCAGCCCCACCATGGCTTCCTCCACCAGCCTACCCTCAAACTGCAGCAACTCCTCTGGAATCTTCTCCTTCTCTCCGGCAAACATGGTTTCAGCTGTGAAACAAAAGAGTGCTTTTGCTCCTGTCATTCGACCACAATCTTCACCTCCACCTACATGCACCAGCACCAATGGAAATGGTGTTCAAGTTATCCCTGGAATGATTGTTCATCAGATGTAG
>TCONS_00038866
CTTTTGCCTTTGGACCGCCTCTCCCGTCCCTCCTTCTAGCTTCTGTGGCTGCTATAAGCTCGTGTTTATTTTCCTCTCACTTAAGGAAAGGATTGATTCCTTTGGGACGGGAAATAAATCACTTCAGTTTGACCAAGGGTGAAGGATTTGGGGATCCTctagatttactcactttatctgtttattttatctgtttttttgttcTGGCAGGAAAAAAACGACGATAAAAGTTGTAGGACATGATACTAGCCTATTTGATAAGAGATCTGCTTGATCGTTGTTTGAAAGAAACGTCGGCGCAGATTATAAATCATTTCGTATTGTTTCCACTGTGCGTCTTGGTGACACCGGGATCTGTCTAGCTTTgccagactctctctctctctctctctctctctctctctctcgctctctctctctctctctctctcgctaacgcacacatacacgcacacgcgCAGGCGCGCGCAATAAGGGTACCTGAGAACACCATTAACGGGAAGAGAAACTGAGAAATCTAGGTTTCATGTTTGGGATTCAGGAGAGCATCCAAAGGTGTGGGAGTATTTTGAAAGAAGAACCCATCGGAGCCGGCATGAACACTGTCCGAACATGGATTCAAGGCGCCGGGGTGCTGGATGCGAACACGGCCGCGCAGAGTGGAGTGGGACTGGCCCGTGCGCACTTCGAGAAACAGCCGCCCTCAAATCTTCGGAAATCCAACTTCTTTCACTTTGTTTTAGCTCTTTATGATCGACAAGGTCAGCCGGTGGAAATAGAGAGAACCTCCTTTGTCGGATTTGTTGAAAAAGAGAAGGAGACTACAGGAGAAAAGACAAATAATGGGATACATTACAGACTGCAACTTCTCTACAGCAACGGCATCAGAACAGAACAGGATTTTTATGTAAGACTAATTGACTCCATGACTAAACAGCCCATCATCTACGAAGGTCAAGACAAGAACCCAGAGATGTGCCGTGTACTCCTGACTCATGAAATCATGTGCAGTCGATGCTGCGACAAAAAGAGTTGTGGAAACCGCAATGAGACACCCTCTGATCCAGTCATCATTGACAGGTTTTTCCTCAAGTTTTTCCTGAAATGCAATCAGAACTGTCTGAAGAATGCAGGAAATCCACGAGACATGCGCCGCTTTCAGGTGGTTGTGTCAACGACAGTGAGTGTAGAAGGACACGTTTTGGCTGTTTCAGACAACATGTTTGTGCACAACAACTCCAAACATGGCAGACGAGCTCGACGACTGGACCCATCAGAAGGAACGCCATCATATTTGGAGCATGCTGCACCTTGTATCAAAGCCATTAGTCCCAGTGAAGGCTGGACAACAGGAGGTGCTACTGTCATCATCATTGGAGACAACTTCTTTGATGGATTGCAAGTCATCTTTGGAAGCATGTTGGTCTGGAGCGAGCTCATCACACCTCATGCAATCAGAGTTCAGACCCCTCCTCGCCACATTCCTGGGGTGGTAGAGGTCACACTCTCCTATAAGTCCAAACAGTTTTGCAAGGGCACACCAGGAAGATTCATCTACACAGCCCTGAATGAGCCCACCATAGACTATGGTTTTCAGCGGTTACAGAAAGTGATACCTCGACATCCGGGAGACCCTGAACGCTTGCCAAAGGAGGTGATTTTGAAAAGAGCAGCAGATCTGGTGGAATCGCTTTATGGGATGCCTCATAATAACCAGGAAATCATTCTTAAAAGAGCGGCAGACATTGCTGAGGCCCTGTATAATGTGCCACGAAGCCACAACCAGCTCACTGGTCTCACTAACAGCTCTGTCCATACAAGCATGATGGGAGGTAATTCCTTTACTGGGCAGCTTGCCGTGAATGTCTCAGAATCATCTCAAGGTGGAAACCAGGGTTTCGGTCGTAACACAAGTAGTGTATCACCACATGGCTATGTACCCAGTTCAACCCCTCAGCAGAGCAGTTACAGTACAGTATCTACTAGCATGAATGGCTATGGTAACAGTGGCATGACCAACCTGACTGGCTCCCCAAACTTCTTGAATGGCTCTGCTGCCAATTCACCCTACGCAATTGTCCCCTCCAGCCCCACCATGGCTTCCTCCACCAGCCTACCCTCAAACTGCAGCAACTCCTCTGGAATCTTCTCCTTCTCTCCGGCAAACATGGTTTCAGCTGTGAAACAAAAGAGTGCTTTTGCTCCTGTCATTCGACCACAATCTTCACCTCCACCTACATGCACCAGCACCAATGGAAATGGTGTTCAAGATCAGTCTTTTGTTGACTCTAACAAGTACTCCACAGCCAGTGCACTCCAGGGCCTGGCCTTCTCCTGAA
>TCONS_00038867
GGGAAGAGAAACTGAGAAATCTAGGTTTCATGTTTGGGATTCAGGAGAGCATCCAAAGGTGTGGGAGTATTTTGAAAGAAGAACCCATCGGAGCCGGCATGAACACTGTCCGAACATGGATTCAAGGCGCCGGGGTGCTGGATGCGAACACGGCCGCGCAGAGTGGAGTGGGACTGGCCCGTGCGCACTTCGAGAAACAGCCGCCCTCAAATCTTCGGAAATCCAACTTCTTTCACTTTGTTTTAGCTCTTTATGATCGACAAGGTCAGCCGGTGGAAATAGAGAGAACCTCCTTTGTCGGATTTGTTGAAAAAGAGAAGGAGACTACAGGAGAAAAGACAAATAATGGGATACATTACAGACTGCAACTTCTCTACAGCAACGGCATCAGAACAGAACAGGATTTTTATGTAAGACTAATTGACTCCATGACTAAACAGCCCATCATCTACGAAGGTCAAGACAAGAACCCAGAGATGTGCCGTGTACTCCTGACTCATGAAATCATGTGCAGTCGATGCTGCGACAAAAAGAGTTGTGGAAACCGCAATGAGACACCCTCTGATCCAGTCATCATTGACAGGT

Function

symbol description
ebf1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human EBF1 (EBF transcription factor 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090814-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human EBF1 (EBF transcription factor 1).

Ensembl:

ensembl_id ENSDARG00000069196 ENSDARG00000092635

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038864 False 1612 mRNA 0.44 10 33724979 33851877
TCONS_00038865 False 2302 mRNA 0.47 16 33725366 33995710
TCONS_00038866 False 2339 mRNA 0.48 16 33734109 33995710
TCONS_00038867 True 585 mRNA 0.47 6 33973095 33995213

Neighbor

gene id symbol gene type direction distance location
XLOC_019743 NA coding downstream 78099 33637162 ~ 33646880 (-)
XLOC_019742 NA coding downstream 247016 33465275 ~ 33477963 (-)
XLOC_019741 rbm22 coding downstream 495029 33211306 ~ 33229950 (-)
XLOC_019740 NA coding downstream 578454 33145252 ~ 33146525 (-)
XLOC_019739 CU019662.2 coding downstream 587896 33136948 ~ 33137083 (-)
XLOC_019745 rnf145b coding upstream 6002 34001712 ~ 34032650 (-)
XLOC_019746 BX510996.1 coding upstream 86008 34081718 ~ 34101917 (-)
XLOC_019747 alg13 coding upstream 237782 34233492 ~ 34261784 (-)
XLOC_019748 dacha coding upstream 368746 34364456 ~ 34658266 (-)
XLOC_019749 zgc:56585 coding upstream 840101 34835811 ~ 34844316 (-)
XLOC_019737 zgc:194629 non-coding downstream 634775 33058625 ~ 33090204 (-)
XLOC_019755 NA non-coding upstream 1649828 35645538 ~ 35650096 (-)
XLOC_019757 NA non-coding upstream 2058774 36054484 ~ 36055407 (-)
XLOC_019765 BX649250.1 non-coding upstream 3077241 37072951 ~ 37073080 (-)
XLOC_019768 NA non-coding upstream 3583036 37578746 ~ 37582114 (-)
XLOC_019769 NA non-coding upstream 3598641 37594351 ~ 37632708 (-)

Expression


Co-expression Network