Gene
RNA
| Item | Value |
|---|---|
| gene id | tmtc2b |
| gene name | LOC106573180 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 43455055 ~ 43634193 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transmembrane and TPR repeat-containing protein 2 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021601864.2 | False | 4095 | mRNA | 0.52 | 12 | 43455055 | 43632581 |
| TU52696 | True | 2153 | lncRNA | 0.39 | 2 | 43631808 | 43634193 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523264 | LOC106573178 | coding | upstream | 176769 | 43236492 ~ 43278286 (+) |
| LOC118964622 | NA | coding | upstream | 437161 | 43014549 ~ 43017894 (+) |
| ttc38 | ttc38 | coding | upstream | 616951 | 42818090 ~ 42838104 (+) |
| LOC110523110 | LOC106573174 | coding | upstream | 639346 | 42677127 ~ 42815709 (+) |
| si:ch211-1e14.1 | LOC106573269 | coding | upstream | 797960 | 42565590 ~ 42657095 (+) |
| LOC110520672 | LOC106573273 | coding | downstream | 174465 | 43807046 ~ 43809761 (+) |
| bicd1a | LOC106573182 | coding | downstream | 189490 | 43822071 ~ 43918842 (+) |
| fgd4a | NA | coding | downstream | 289743 | 43922324 ~ 44028577 (+) |
| LOC110523376 | LOC106573186 | coding | downstream | 416307 | 44048888 ~ 44052979 (+) |
| LOC118964631 | NA | coding | downstream | 493312 | 44125893 ~ 44134097 (+) |
| G47098 | NA | non-coding | upstream | 3664 | 43451160 ~ 43451391 (+) |
| G47066 | NA | non-coding | upstream | 25862 | 43428924 ~ 43429193 (+) |
| G47058 | NA | non-coding | upstream | 29717 | 43425084 ~ 43425338 (+) |
| G47057 | NA | non-coding | upstream | 29983 | 43424829 ~ 43425072 (+) |
| G46093 | NA | non-coding | upstream | 167347 | 43278843 ~ 43287708 (+) |
| G47362 | NA | non-coding | downstream | 19974 | 43652555 ~ 43653048 (+) |
| G47461 | NA | non-coding | downstream | 145583 | 43778164 ~ 43784088 (+) |
| G47463 | NA | non-coding | downstream | 160377 | 43792958 ~ 43793440 (+) |
| G47466 | NA | non-coding | downstream | 168984 | 43801565 ~ 43801898 (+) |
| G47470 | NA | non-coding | downstream | 174008 | 43806589 ~ 43806814 (+) |
| G45870 | NA | other | upstream | 563462 | 42891218 ~ 42891593 (+) |
| LOC110522826 | LOC106573295 | other | upstream | 2162151 | 41282901 ~ 41292913 (+) |
| G43922 | LOC106600457 | other | upstream | 2525579 | 40925492 ~ 40929476 (+) |
| LOC110522691 | NA | other | upstream | 2700953 | 40745740 ~ 40754201 (+) |
| G43352 | NA | other | upstream | 3249350 | 40205286 ~ 40205705 (+) |
| G47467 | NA | other | downstream | 169932 | 43802513 ~ 43802963 (+) |
| G47595 | NA | other | downstream | 412089 | 44044670 ~ 44048011 (+) |
| G47667 | LOC106573189 | other | downstream | 506510 | 44139091 ~ 44143716 (+) |
| e2f4 | LOC106573204 | other | downstream | 1088124 | 44720664 ~ 44748569 (+) |
| G47910 | LOC106573211 | other | downstream | 1157049 | 44789630 ~ 44791090 (+) |
| G47214 | NA | non-coding | upstream | 17062 | 43614544 ~ 43614746 (+) |
| G47207 | NA | non-coding | upstream | 24461 | 43607135 ~ 43607347 (+) |
| G47205 | NA | non-coding | upstream | 25975 | 43605630 ~ 43605833 (+) |
| G47203 | NA | non-coding | upstream | 28995 | 43602598 ~ 43602813 (+) |
| G47108 | NA | non-coding | upstream | 169787 | 43461388 ~ 43462021 (+) |
| G47212 | NA | other | upstream | 18754 | 43612430 ~ 43613054 (+) |
