XLOC_019748 (dacha)


Basic Information

Item Value
gene id XLOC_019748
gene name dacha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 34364456 ~ 34658266 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038874
CGAGGAAGGTAGTAGCACATTACCGAACGTCAGCAGGCGCTACCGGAGGCGCATGAGAAACGACGAGTAAAAGCCGCGAAACAATCCGAGGAGCCAGCAAAGGTGTGCTTGACTCAAAAGTACGGAAAGGAGGAAACTTCGCGTAAACTATGGCCGTATCTGCAACTCCTCCGGTGCTTTCACCGACCTCCACTCCCGGGGGCGCGAGCCTGTTCCGTCCCGACTCTCTGTACTCCAGCCCAGCCGAGTCGCCGCGACTGACCAGCAGCATGATCAACTCTTTCATCACCGGCGGCGGCAGCACGAACGGGAACGGGCCCGGTGGTGTCCACAATAACGAGTGTAAGATGGTGGAGGTGCACGGGGTGAAAGTGGCCTCGTTCACTGTGGACGGTCAGGAGCTCATCTGCCTCCCGCAGGTGTTCGACCTGTTCCTGAAGCACCTGGTCGGCGGACTGCACACCGTGTATACCAAGCTGAAGCGGCTGGATATATGTCCGGTGGTGTGCACGGTGGAGCAGGTGCGGATCCTGCGCGGACTCGGGGCCATTCAGCCGGGCGTGAACCGGTGCAAACTCATCACCCGAAAAGACTTCGAGACACTTTATAACGACTGCACCAATGCCAGTTCTCGGCCTGGTCGTCCTCCTAAGCGCTCTCTCGGTGTGGCGATGCAGGACAGCTCTCGTTTGCTTCCTCACAGCGTTCATGGGCTGCTCTCTCCAGGTCTGCTGTCACCAACAGGACTGACAGCAGCAGCCATGGCTGAAGCTATGAAACTCCAGAAAATGAAACTGATGGCTATGAACAACATTCATGGAGCAGGAAGCCAGAATGGTACAGAGTCTGAGAACGAAGAGCTGAACTCCAGTGCAGGCGGCAGTGAGTCGTCTTGGGATAAAGAGAAACTCCAGTCCCCCCCTTCCTCTGGAGCACAGCATGGTTTGGCTCACGCTGCCCTCTCCGCTCAGCATGGCCTATCAGGGTCTCATCTCTCTTCCCTACAGCAGAGTCATCTCCTGGCTAACcGGCTGGACCTGCCATTTATGATGATGCCCCACCCCCTGCTGCCCGTCAGTCTGCCGCCTGCCTCCGTTGCCATGGCAATGAACCAGATGAACCACCTGAACACCATCGCCAACATGGCCGCAGCTGCTCAGATGCACAGCCCCCTGTCCAGAGCAGGAGCGTCCGTCATCAAGGAGTGTGTACAGGACAGTCCATCCCCTACTCCTTCTCTGGAGGAAGCTCCTCGTCCCGGATCACAGCCCTCTTCCCATCCTAGCAGTAGTGTGTCTAGTTCTCCGAACCCGCACACACAGAGTCCTGAACGCCTGGTTTTGAACCCGACTGATGGAGATCTGCCAGAACGAGACACCGGCATCAATATGAAGAAAATGCTTAAGGAGAAAGATGAGGCACAGATAACTTTGCCAATGCAGAAGCCAGGGTTCGAGAAGCTTCCTCTGGGCACTCAGACTCTTCCTCCAGGCTTCCCTGCTCCCTTCCTGTTTGCAGATGGCCTCTCTTCTGTGGAGACATTGCTCACTAACATCCAGGGTCTGCTGAAGGTGGCTGTAGATAATGCCCGTGTGCAGGAGAAACAGGTGCAGCAGGAACGCAAGGAGTTGAAGATGGAGCTgtacagagaaagagagatgagAGAGAGTCTGGAAAGACAACTCACCTCTGAACTGCACAGCCGAGCCACCATTCAGAAGCGTCTGAAGAAGGAAAAGAAGGCGAAAAGGAAACTGCAGGAGGCTCTGGAGTTTGAATCCAAGAGGAGAGAGCAGGTGGAACAGGCTCTCAAACAGGCCACTTCTCCTGAGAGTCTCCGCATGAGTCTAAACGAAGCAGTCATACCAGAGGTGAAATCTGAACATAATGGCAACCAGCAGGAGAACTCATCTGTACAAGAAAACAGACCCTACTCCAAACCCCCCATCATGTACTGAAGACTCTAACATCTTTAGCTCCACGACCATGACAGACATCTCAGCCCACAGGCAGACGGAGCTTTTTCCACTAAGGAAAAGTGGTGTGGGTGCTGAAGAGCAGTCACCTGAAACCCGTGTACAGGACTTGAGTGTGTATGTACATTTATGTGTGTGGAGGTGCAGTGCGCTTACGGTCCTCGTGAGacgcgtgtgtgcgtgtgaatgtttCTGGAGCACTGCTCGTCGACGACCTTTCCACACCACATGCACCGACTTGTAAAAATTGTCTTTCTCTCTTGTTTTGACTACTTCTACATCCCACTTTTTTGAGATTAAAGCaagtgtttgttgtttttttttctggattaaaATGTCATTACCTAATGAAATACCCGTCTTTATGTGAAGCACACAGCATCACCCTCCCCTAATCTccagtttgttattattattattattattattattattattattattactgagtGTTATCTGCTGATCCCCCATGATTCTGTGCACCAGTGATTCTGAACAGCACAACAGTCTTGACGAGTCTGTATAGCAATTTGTCGCTACACAAAGGGACAGAAAAGACATATTATATGGACAGACTCCAACTAAGATGTGTGCTTCTTTATTAAACattgtcttttttgttgttttgcctTTAAAAAAGGGATTCTACAGTATATCAATACTTTTTTTGTTTCTAATTTGGTGTATTTTTTTAGGAAGTGTAGAAATATTTTCCTCATGTTGTCATTTCTCTGCCGTTTGTGTTTATTTCATTATCCGGTTTGTCGTTTTCCTTTGTATtttaatcagcattttaaaaacagatgCTCAAGTGATCTTGAAACATGTTCTTTGTATGTCTTTCTTTGACCCGCGACAATGTTTTTCTCTATTGCTCCTTAAcgtaaaagtaaaaaa
>TCONS_00038875
TCTCGTAGTTTGGGCACGCCTCGATTAGGAATGCTCAAAAGGATCAACTGAGTCAGATGCTCCAAATGAGGAAAGAAAGAACTCCCCTTGTTCTTCAACCAAGAGCATGATAGGAAACAGTTTTTCTTCTTGTTGTAAGTACAACCGGAAATGTctgcttatgttttttttttttaagtcactgAAGTTTGATTTGAAGCTATAGTAGTTGACCATCTTCAAAGGCGGGATCTTTTGACATttcgctgtttttttttcctgcactATGTTGACCCCCATGGAATCATTGTGCTGCCCCAACATGCTGTTTTCTAATTTGCTTTCCTCAAAGGAAATGAAGTCGTGTTATCGGAACACTGAGTTCTCGGCCTGGTCGTCCTCCTAAGCGCTCTCTCGGTGTGGCGATGCAGGACAGCTCTCGTTTGCTTCCTCACAGCGTTCATGGGCTGCTCTCTCCAGGTCTGCTGTCACCAACAGGACTGACAGCAGCAGCCATGGCTGAAGCTATGAAACTCCAGAAAATGAAACTGATGGCTATGAACAACATTCATGGAGCAGGAAGCCAGAATGGTACAGAGTCTGAGAACGAAGAGCTGAACTCCAGTGCAGGCGGCAGTGAGTCGTCTTGGGATAAAGAGAAACTCCAGTCCCCCCCTTCCTCTGGAGCACAGCATGGTTTGGCTCACGCTGCCCTCTCCGCTCAGCATGGCCTATCAGGGTCTCATCTCTCTTCCCTACAGCAGAGTCATCTCCTGGCTAACc

Function

symbol description
dacha Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within inner ear development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural crest; optic vesicle; otic vesicle; and solid lens vesicle. Orthologous to human DACH2 (dachshund family transcription factor 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048839 inner ear development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-020402-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within inner ear development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural crest; optic vesicle; otic vesicle; and solid lens vesicle. Orthologous to human DACH2 (dachshund family transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000010132

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038874 False 2873 mRNA 0.50 12 34364456 34658266
TCONS_00038875 True 762 processed_transcript 0.48 4 34430460 34536374

Neighbor

gene id symbol gene type direction distance location
XLOC_019747 alg13 coding downstream 102672 34233492 ~ 34261784 (-)
XLOC_019746 BX510996.1 coding downstream 262539 34081718 ~ 34101917 (-)
XLOC_019745 rnf145b coding downstream 331806 34001712 ~ 34032650 (-)
XLOC_019744 ebf1b coding downstream 368746 33724979 ~ 33995710 (-)
XLOC_019743 NA coding downstream 717576 33637162 ~ 33646880 (-)
XLOC_019749 zgc:56585 coding upstream 177545 34835811 ~ 34844316 (-)
XLOC_019750 kif20a coding upstream 221002 34879268 ~ 34926738 (-)
XLOC_019751 lipia coding upstream 286767 34945033 ~ 34972872 (-)
XLOC_019752 adrb2b coding upstream 420500 35078766 ~ 35082715 (-)
XLOC_019753 ublcp1 coding upstream 646708 35304974 ~ 35325541 (-)
XLOC_019742 NA non-coding downstream 886493 33465275 ~ 33477963 (-)
XLOC_019740 NA non-coding downstream 1217931 33145252 ~ 33146525 (-)
XLOC_019739 CU019662.2 non-coding downstream 1227373 33136948 ~ 33137083 (-)
XLOC_019737 zgc:194629 non-coding downstream 1274252 33058625 ~ 33090204 (-)
XLOC_019755 NA non-coding upstream 987272 35645538 ~ 35650096 (-)
XLOC_019757 NA non-coding upstream 1396218 36054484 ~ 36055407 (-)
XLOC_019765 BX649250.1 non-coding upstream 2414685 37072951 ~ 37073080 (-)
XLOC_019768 NA non-coding upstream 2920480 37578746 ~ 37582114 (-)
XLOC_019769 NA non-coding upstream 2936085 37594351 ~ 37632708 (-)

Expression


Co-expression Network