XLOC_019749 (zgc:56585)


Basic Information

Item Value
gene id XLOC_019749
gene name zgc:56585
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 34835811 ~ 34844316 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038876
ACTTCACATTTTACTTCGGCTCACACACCCATTGAAGACCCGTTATGTTTTGTTTGGCGTGTTTGATGTTAAACTCCTCCCCCTCACTTGGCTTATGTTCATCGGTCACTCTTTCACTATTTCAGTAGTTGCTACTCCAAACGCTGTTCGGACGCACAGGTGTGTAGCTGACGATGGATTTAAAGGATAAAGTTGCTGTTGTGACCGGAGCAGCTCAGGGTTTGGGCAGAAGTTTTGTCGAAATACTCATGAAAAATGGGTCAAAGGTGGCTTTAATTGATGTGAATAAATCTCTTGGAGAGGAATTAAAGACTACTCTTAATAAAGAGTATGGACCCAACAGGGCTGAATTTTACACTGCTGATGTCTCATCAGAGGAAGATTTTAAAGGAGTTTTGAAAAAAATTGTAGAGCAATTTGGCCAAATAGACATCATGTGCAACAACGCTGGCATCATCAATGAAAAGCACTGGGAAAAGACTATTGCAATAAACCTGGGTGGTGTGGTCAGGGGCACGTATCTCGCTCTGGAATATATGAAGAAAGAAAATGGTGGCAGTGGTGGAGTCATTGTCAACGTTGCATCCATGGCAGGTTTGGGGCCTTTGCCAGTAGCACCCATCTATACCGCTACTAAACACGGCGTGGTCGGATTTAGCCGTGCCATGGCGGTTGTTTCCAAGTTTTCCAACTATGGGGTGAGGATCAATGTCCTCTGTCCATGGTTTGTGAAGACCAGTCTTCTGTCCCTCTTGAACTCAGAGGAGCATACTGGAAGTTTTTCTCAAATGAAGGAAATCACGGAGATGTTGATGGAGAGTGAGGGCTGTCTGGAGGTGGATGTCGTTGCCAAGGCCTTTCTTGTTCTTGTGAAAGATGAAAGTAAGGATGGAGAAGCTCTGATGATTAATCCAGATGGAGCAGCTATTATAACCTTTCCAGAAAATGGCAAAGACATTCCATCTACTCCAGTCAGTCTAGAGTAGCTCATTAGTTCCTTTCCTCAACACATTCATTTTGGGATTAAAGATGTCATACTCTTACCTCATATACCTTTACCTGgtttagtaataaaataatacacacaaactaaaaatcagtgtttctcaaccatgtttgtGGAGAACCATccacactgcatgttttggatgtcttctttgttcatcacactcattacaggtcttttagtctctgccaatgagctgatgatctaaatcaggtgtgtttggttaaggagccATGGGAAATGTGGtcttccaggaacatggttgagaaacactgctctaaaaaTGTAGATAAATGGTCtgaaactcaattcctggattaTTGCTCAGCataatttagctccaaccacctcaaACTCAGTAGTAATCTCTAgtaactctgaattctgactttctaactcggaattctgactttctAACTCGGAATTGTAACTTTCTAACTTGGAATTGCAACTTTCTAACTCTGGCATCTTTGAGGAAACTTTTTGATCCACTTTTAGTGCTGACAAAAATATTAGTCCTCCTGGGAAATTTGAATTATTGTcctttttacagagcaaggaacatcattttcacagtacgtcCAAGCATTTTTATTCTTCTGgacaaggtcaatattattagacctcttaaaaaattgttttttttattggcttTATCATTTCGATTTTGCATTATAAGCCGAATAATAGTagcttgcaaaataactagtatcatataatgtactgtcatggCAAAACCAAAAGAAATgagtttttacaatttatttaaaaactattgtgGAAAAAGTTAACCatcaatttggaaaaaaaatgtttacaggagggctaatagtaaTACCACCGATGGAATTCATAAGGGACCTAGAAATCTgccttttcaaaatgtatattttaatatgctTTCATATACTTGTATacgtatgctatatatatatatatatatatatatatatatatataggtgtgtgtgtgtgaatatatataaaatgccaATATGTTCAAATAAATAAGCTACTGATATCA
>TCONS_00038877
ATGCATCCATCTAGTTTTGATCATGCGTTGGATGCTCTTTTGAATGTGAGCTGAAATTTTGTGCAACAATAGTGTCATCAGAGGAGGATGTTTAAAGGGCTTTTAAAGCATGATCTCATTCGGTATCTGGGAATGATTAACACATGTGGAGTCCAGATTGTGAAAGTAGCCTTTACGTGCCATCGCTCGCAGCTCAGATGATCTTGAgtggacaaaaacaaacaatGTGTGTAGCTGACGATGGATTTAAAGGATAAAGTTGCTGTTGTGACCGGAGCAGCTCAGGGTTTGGGCAGAAGTTTTGTCGAAATACTCATGAAAAATGGGTCAAAGGTGGCTTTAATTGATGTGAATAAATCTCTTGGAGAGGAATTAAAGACTACTCTTAATAAAGAGTATGGACCCAACAGGGCTGAATTTTACACTGCTGATGTCTCATCAGAGGAAGATTTTAAAGGAGTTTTGAAAAAAATTGTAGAGCAATTTGGCCAAATAGACATCATGTGCAACAACGCTGGCATCATCAATGAAAAGCACTGGGAAAAGACTATTGCAATAAACCTGGGTGGTGTGGTCAGGGGCACGTATCTCGCTCTGGAATATATGAAGAAAGAAAATGGTGGCAGTGGTGGAGTCATTGTCAACGTTGCATCCATGGCAGGTTTGGGGCCTTTGCCAGTAGCACCCATCTATACCGCTACTAAACACGGCGTGGTCGGATTTAGCCGTGCCATGGCGGTTGTTTCCAAGTTTTCCAACTATGGGGTGAGGATCAATGTCCTCTGTCCATGGTTTGTGAAGACCAGTCTTCTGTCCCTCTTGAACTCAGAGGAGCATACTGGAAGTTTTTCTCAAATGAAGGAAATCACGGAGATGTTGATGGAGAGTGAGGGCTGTCTGGAGGTGGATGTCGTTGCCAAGGCCTTTCTTGTTCTTGTGAAAGATGAAAGTAAGGATGGAGAAGCTCTGATGATTAATCCAGATGGAGCAGCTATTATAACCTTTCCAGAAAATGGCAAAGACATTCCATCTACTCCAGTCAGTCTAGAGTAG

Function

symbol description
zgc:56585 Predicted to enable oxidoreductase activity. Predicted to be active in cytoplasm. Is expressed in segmental plate and yolk syncytial layer. Human ortholog(s) of this gene implicated in colon carcinoma and primary hypertrophic osteoarthropathy. Orthologous to human HPGD (15-hydroxyprostaglandin dehydrogenase).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1084 Predicted to enable oxidoreductase activity. Predicted to be active in cytoplasm. Is expressed in segmental plate and yolk syncytial layer. Human ortholog(s) of this gene implicated in colon carcinoma and primary hypertrophic osteoarthropathy. Orthologous to human HPGD (15-hydroxyprostaglandin dehydrogenase).

Ensembl:

ensembl_id ENSDARG00000026236

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038876 False 2029 mRNA 0.38 8 34835811 34844059
TCONS_00038877 True 1053 mRNA 0.43 8 34836854 34844316

Neighbor

gene id symbol gene type direction distance location
XLOC_019748 dacha coding downstream 177545 34364456 ~ 34658266 (-)
XLOC_019747 alg13 coding downstream 574027 34233492 ~ 34261784 (-)
XLOC_019746 BX510996.1 coding downstream 733894 34081718 ~ 34101917 (-)
XLOC_019745 rnf145b coding downstream 803161 34001712 ~ 34032650 (-)
XLOC_019744 ebf1b coding downstream 840101 33724979 ~ 33995710 (-)
XLOC_019750 kif20a coding upstream 34952 34879268 ~ 34926738 (-)
XLOC_019751 lipia coding upstream 100717 34945033 ~ 34972872 (-)
XLOC_019752 adrb2b coding upstream 234450 35078766 ~ 35082715 (-)
XLOC_019753 ublcp1 coding upstream 460658 35304974 ~ 35325541 (-)
XLOC_019754 si:dkeyp-23e4.3 coding upstream 538127 35382443 ~ 35534401 (-)
XLOC_019743 NA non-coding downstream 1188931 33637162 ~ 33646880 (-)
XLOC_019742 NA non-coding downstream 1357848 33465275 ~ 33477963 (-)
XLOC_019740 NA non-coding downstream 1689286 33145252 ~ 33146525 (-)
XLOC_019739 CU019662.2 non-coding downstream 1698728 33136948 ~ 33137083 (-)
XLOC_019737 zgc:194629 non-coding downstream 1745607 33058625 ~ 33090204 (-)
XLOC_019755 NA non-coding upstream 801222 35645538 ~ 35650096 (-)
XLOC_019757 NA non-coding upstream 1210168 36054484 ~ 36055407 (-)
XLOC_019765 BX649250.1 non-coding upstream 2228635 37072951 ~ 37073080 (-)
XLOC_019768 NA non-coding upstream 2734430 37578746 ~ 37582114 (-)
XLOC_019769 NA non-coding upstream 2750035 37594351 ~ 37632708 (-)

Expression


Co-expression Network