LOC118964638


Basic Information

Item Value
gene id LOC118964638
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44456457 ~ 44468459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051832.1
cagaccgagatagatagagagagagacagagagagagacagagagagagacagagagagagagaggacattagCGCAACATTGTGGCGCAGCATTTTCACAAAGCTTGAACTCACTGCACTCAGTTAGCACGTCTGATGATGACACACACATTCTTGAACAAGGAAGTCATTTGCAGTCtttctatttgtatttatttttggtgTTTGGTGCTTTCAATGAGGAGCGGACAAGAACATAATAAGGATGACCTGTATATAGGGTCATCATGTGGATCATAAAAAGCTTACGAAATATGTGTGCTGTGCTCTTCCCAGCTTCAACTTGAAAGGGAGGCCAAGCTACAGCGCTGTAGCAAACCAGAAGGCCCGTTCCCATCAAGCCTGCCGAATATCTCGACTGATCTCCCTCGAAGCTGGAAACAATTTTGGAGGTCTTGGGGCCGCAGGTTGGGGAACcctggcctacagggaggaggtcagagacctagcagtgtagtgccaggacaacaacctctccctcaacgtcggTAAGACAAAGCTGATCGTGGATTACAAGGAACACAGGTGGAGAgcatcaagttccttggtgttcacatcactaaGgacaaggtaactccctgccacccaggacctctataccaggcggtgtcagaggaaagccctaaaaagaTTGTCCAAAGCTCCAGCCACCAAGTCATacaatgttctctctgctaccacatggtaAGCGGTACCAAcataccaagtctggaaccaacagggcccttaacagcttctaccccccaagacatcagactgctaaatagttagttaattggtccgggtagctattggttaactatctacaatgaccctttttgcactaactctttagACTCATCACATACGTTGCTGTTTACTATCTATGAtgtatcctgttgcctagtcactttatcacTATCTatgtgtacatatctacctcaattacctcgtacccctgcacatcgactcggtactagTACCCggtgtataaagccaagttatcgTCACGCATTGTGCATTTATTACTTGAgttattattttacttttttttctctctgcattgttggaaagggcccgtaggtaagcatttcatcgttagtctacacctgttgtttacgaagcatgtgacaaatacaatttcattttatttgaaCTTCGTtgttgaggaaaatgttttacttaCTACGACTGTGatattttaagatgaatgcacacactgtaagtcactctggacaaGAGTGCCTCCTAAATTACTAAAATGCTGTAAACAATGCTGTGAACAATGCTGTGAACGATGCTGTGAACAATGCTGTGAACAATGCTGTGAACGATGCTGTGAACAATGCTGTGAACAATGCTGTGAACAATGCTGTGAACGATGCTGTGAACGATGCTGTGAACAATGCTGTGAACGATGCTGTGAACAAGGCTGTGAACAATGCTGTGAACAATGCTGTGAACAATGCTGTGAACGATGCTGTGAACAATGCTGTGAACAATGCTGTGAACAATGCTGTGAACTAATTTTCCCCAATCCTCATTCTCTGGGCCCCTCATCTCTAAACGAAGAGATCAAGACAGCTCTACTTTATCAGGGTGACTGGAATGTCGCTCTCTTCTGTTTTTGGTGTGTGTCTAACGCAATGCCATATGTCTAACGCAATGTTATCCAGGTGGATATCAATAAAGACGGTGTGCTTCAGGTAGAATCCCCCCACCGTTTCTGAAGCCTAATCTCTCTATTGAAGCAGCTGCATTGATTTGTGATTGGTACAAAGGCTGAGTA
>TU53474
gtgacagagagagagacagagagagagacagagcgagacagagacagagaaagagaccgagagcgacagagacagagagacagagacagagacagagagagagacagagacagagagacagagagagagagagcgacagagagacagagagacagagagagagagagagagagagtgacagagagagagacagagagagagacatagagagagacagagagagagacagagagagagacagagagagtgacagagagagagacagagaaagagacagagagagagacagagggagagacagagcgagacagagacagagaaagagcgagacagagacagagaaagagaccgagagcgacagagacagagagacagagagagagagagagagagagacagagagagagacagagagagagacagagagacagagagagacagaaagagagacagagagagagacagagagacagaaagagagacagagagagagagacagagagagagacagagagacagaccgagatagatagagagagagacagagagagagacagagagagagacagagagagagagaggacattagCGCAACATTGTGGCGCAGCATTTTCACAAAGCTTGAACTCACTGCACTCAGTTAGCACGTCTGATGATGACACACACATTCTTGAACAAGGAAGTCATTTGCAGTCtttctatttgtatttatttttggtgTTTGGTGCTTTCAATGAGGAGCGGACAAGAACATAATAAGGATGACCTGTATATAGGGTCATCATGTGGATCATAAAAAGCTTACGAAATATGTGTGCTGTGCTCTTCCCAGCTTCAACTTGAAAGGGAGGCCAAGCTACAGCGCTGTAGCAAACCAGAAGGCCCGTTCCCATCAAGCCTGCCGAATATCTCGACTGATCTCCCTCGAAGCTGGAAACAATTTTGGAGGTCTTGGGTGAGTAAAATAATCGTGTAATACAGGCTTGATTAAGCCACTTAACGGACAGAGCGATGAAGGTCCAACTGGGCAACAGGTTCTGGCTACTAACAGTGAAGCTctttgagacagacagacaggcatgtaGAGTACAGTGCAAACTAGCCGTGGACACTTACAAAAACATCTCAGGAAGACTACGATCACTACTAGTGCAATAATGTCAAATCGAGTAATGAAGGAATCTCACAGGGAATCATGTATTCACTCCTGCTCCCCAACCACTCAATCACATATTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051832.1 False 1808 mRNA 0.44 3 44457259 44468459
TU53474 True 1239 lncRNA 0.47 2 44456457 44457981

Neighbor

gene id symbol gene type direction distance location
LOC110523481 LOC106573277 coding upstream 89229 44360935 ~ 44368030 (+)
LOC110523475 LOC106573196 coding upstream 97001 44276332 ~ 44360258 (+)
LOC110523455 LOC106573195 coding upstream 109322 44306507 ~ 44347937 (+)
LOC110523466 LOC106573194 coding upstream 150969 44288080 ~ 44306290 (+)
LOC110523417 LOC106573190 coding upstream 241372 44155906 ~ 44215887 (+)
kdm7ab LOC106573199 coding downstream 130173 44598632 ~ 44647421 (+)
cnot1 LOC106573200 coding downstream 195468 44663927 ~ 44681956 (+)
e2f4 LOC106573204 coding downstream 252205 44720664 ~ 44748569 (+)
LOC110523610 LOC106573209 coding downstream 281299 44749758 ~ 44787067 (+)
vac14 vac14 coding downstream 388449 44856908 ~ 44886958 (+)
G47826 NA non-coding upstream 13314 44443231 ~ 44443945 (+)
G47764 NA non-coding upstream 67392 44387529 ~ 44389867 (+)
G47777 NA non-coding upstream 159396 44297429 ~ 44297863 (+)
G47666 NA non-coding upstream 310028 44145752 ~ 44147231 (+)
G47771 NA non-coding downstream 81284 44549743 ~ 44551214 (+)
G47866 NA non-coding downstream 84044 44552503 ~ 44552877 (+)
G47870 NA non-coding downstream 93262 44561721 ~ 44621057 (+)
G47903 NA non-coding downstream 182122 44650581 ~ 44651012 (+)
G47905 NA non-coding downstream 183974 44652433 ~ 44652716 (+)
G47667 LOC106573189 other upstream 313543 44139091 ~ 44143716 (+)
G47595 NA other upstream 409248 44044670 ~ 44048011 (+)
G47467 NA other upstream 654296 43802513 ~ 43802963 (+)
G47212 NA other upstream 844205 43612430 ~ 43613054 (+)
G45870 NA other upstream 1565666 42891218 ~ 42891593 (+)
G47910 LOC106573211 other downstream 321171 44789630 ~ 44791090 (+)
LOC110523657 NA other downstream 602895 45071354 ~ 45072433 (+)
G48976 NA other downstream 676819 45145278 ~ 45146640 (+)
G49142 NA other downstream 946247 45414706 ~ 45418180 (+)

Expression


Co-expression Network