e2f4 (LOC106573204)


Basic Information

Item Value
gene id e2f4
gene name LOC106573204
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44720664 ~ 44748569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602458.2
AATTAAACCAAACCATCCCAGCATACCTCGCGTGTGCAACGGCTTCTGACTTTATgctcatttaaatattttgtagGCCTGTTCTGGATTAACAGGTCAAGAGTCTGGACCACATTGGATTCTCCTACCATTACCGTGCAAAGCACTTTATATAGTCAAACAAAGCACGGCGTGTGATAGAGGCTACCTGCtgaagctagctaacgttggcaTTGGCTAGCAAGTGAGTTCGGGACTAAACGGGGAGGCAGCTAGCTACGGATCTGAATAAGACTTCGTAATCAGATGGAACTGGAGTCGGGAAGAACCGAACTTGGAGCTATGGGAGATTCGCTTCAACCTCAAACCCCAAGTCGACACGAGAAGAGTCTAGGATTGCTTACAACAAAATTTGTAACTTTGCTACAAGAGGCCAAGGATGGAGTTCTAGATCTGAAAGCAGCAGCAGACACCTTAGCTGTAAGACAGAAGCGCCGCATCTACGACATTACCAATGTGCTCGAAGGCATCGGATTGATCGAGAAGAAGTCCAAGAACAGTATTCAGTGGAAGGGTGTTGGTCCTGGCTGTAACACACGGGAGATAGCCGATAAGCTCATTGATCTGAAGGCAGAGCTGGATGATCTGGACAAGAGGGAACACGAGTTGGATCAGCAGAGGGTCTGGGTCCAGCAGAGCATCAAGAACGTTACAGACGACTCACAGAATAGCCCtatgGCTTATGTAAAACATGAAGACCTATGCAGTGCATTCAAAGGTGACACCCTCTTAGCAATCCGCGCTCCCACAGGCACACAGTTGGAGGTGCCCATACCGGAGTCTgtactgaatggacagaagaAGTATCAGATCCGTCTCAAGAGCTCAGCAGGACCCATTGAGGTTCTTCTAGTAAACAAGGACCCGTCCAGCCCGTCTCCAGTGGTACTGCCCGTCCCCCCACCAGAGGACATGCTCCAGAGCCTGCCAGTGCCTGCTGCTGCAAACCCAAAACCAGCACCTGCTGCCCCCAACCAGCCTCTGACCCCCTCCTCCAACCCCAGTTCTGCCACACTCTCACCTGCTTCCACAGCTACTACCAACCAGGCAGTCACCACCGCAGTGTCTAGCAAAAACGTCAGCACACTGACTGTTTCCACACCCACTACAAACACAACTGCCCAACCAACAACTCTGTTGGACACCCAGCCTCTCCAGTCCTCTGCCTCGTTGGATGGCTTCTCTTCCTCATCTTCAGCAATCTTTGGATCAATCAAGACTGACCCCTCAGAACTGCTGGATTTCCCCAAAGAACTTTCTGAtatgtttgacccaagtaaagAGATCATGAGTGCAGACCTGTTGGAGGAGTTGATGTCTTCTGAAGtgttctctccactcctccgtcTGTCTCCCCCGCCGGGTGACCACGACTATATCTATAACCTTGACGAAACCGAAGGCCTTTGTGACCTCTTTGATGTTCCTATCCTTAATCTTTGACCTCTGAGCTGAGTTCCCAATAGTGTATTATGTAAGGAAATCTAAGTACAAAACATGTTGACCATTTTTATATGGGAAAAAAACAAATGAGTGATTTTATTTTTGGATCCCTATGTATTAGAAGATAtttctgtgtaaaaaaaaaacaaaaaaaacaagtgtTGTTAGTCTGATGCTCTTCTTTCTCTTACCCAAATCGTTCCACTTAACATTGGCAGCAAATGTTTCAGGGCGTAGTGGCTCTAAGTTAGATGAAAAGGGGGGGATAAAGAAATATTGTCCTCTCCAAACTGAACTGATGATCTCTCTGGTGAAATTCCTTTCTCATGCTGGTCTGTGATGAACTATATTCCCTCCTTCAATCTATGTTTTGAAGTAAGTTACAAACTGGCAAAAGCAGTCATCATCGCGTTCTGATCCTCATCAACACAGTGTCAACAGATTCAGAGACACCCAGGCAGCTGCACACACTCGTACAGTACGTgtgaatgtgcacacacacagctgatCAAATATGCACTGTTCTGTGtatatagagaatatatatattttgtattaccAGCATTTGTGGAGTTAAATGTGTAATGAACTACATGTGTGAGACCGCAATAGTGAACCAGGGTTCCAGACGAAGACAGGATAAGAGAAGGTTTTGAGGGGTTTTAGGTGTAATGCACATTGAATTAACATCTATCATTCATCTGGGTCCCCTTGCCTTTGTCGTTGTTGTTTTTCTTACCTGTTTCACTCACTTTACAACATTATCTGCGGCACTCTTGGTTTGTCTTACAATTATTATGtatataaatattttatttaGTCTATGTAAAATAATGTTTGTAGCTGTTTAAAAAATACATGAAAAACAATCATTAATTCCTATAAAGTATGGTAGCGTTTTGAGTGTTGTCTATCGTCTTTGTATATGTTGCTCTGATCCGTGTTCAATAGAAAAGGTCCCCACATACTTTCACCGTGACTATGGAAATGTAGTGTGAGAGAATAGTTGTTCTTAATTTCATTctgttcatttttgttttatttccttCCCTAAAGCATTTATTTTGTATACCTGTCAGATATATTACCGATTTGGGGGTATAAAATATATTCTCAAAATACGATAATCTGTATCAAACTGCTCTCACATCATTGCACTTTACAACACTCCAACCAGTTAGCATCTGTCGTTTGGGTGGTGTTGTCAGTTCGCCTTCAATGCCCAGGGAATTCAAGAGGAGTCTGCTTACATGTAACATTAGATGTGTTAAGAGGCTCAGAGGATCTATAGTATCATTGCATTTGCAATAATGATGACTAAAACGTTAGTTGcatcatgtaaaaaaaaa
>TU53574
GCTTCTGACTTTATgctcatttaaatattttgtagGCCTGTTCTGGATTAACAGGTCAAGAGTCTGGACCACATTGGATTCTCCTACCATTACCGTGCAAAGCACTTTATATAGTCAAACAAAGCACGGCGTGTGATAGAGGCTACCTGCtgaagctagctaacgttggcaTTGGCTAGCAAGTGAGTTCGGGACTAAACGGGGAGGCAGCTAGCTACGGATCTGAATAAGACTTCGTAATCAGATGGAACTGGAGTCGGGAAGAACCGAACTTGGAGCTATGGGAGATTCGCTTCAACCTCAAACCCCAAGTCGACACGAGAAGAGTCTAGGATTGCTTACAACAAAATTTGTAACTTTGCTACAAGAGGCCAAGGATGGAGTTCTAGATCTGAAAGCAGCAGCAGACACCTTAGCTGTAAGACAGAAGCGCCGCATCTACGACATTACCAATGTGCTCGAAGGCATCGGATTGATCGAGAAGAAGTCCAAGAACAGTATTCAGTGGAAGGGTGTTGGTCCTGGCTGTAACACACGGGAGATAGCAATCCGCGCTCCCACAGGCACACAGTTGGAGGTGCCCATACCGGAGTCTTGCTGGATTTCCCCAAAGAACTTTCTGAtatgtttgacccaagtaaagAGATCATGAGTGCAGACCTGTTGGAGGAGTTGATGTCTTCTGAAGtgttctctccactcctccgtcTGTCTCCCCCGCCGGGTGACCACGACTATATCTATAACCTTGACGAAACCGAAGGCCTTTGTGACCTCTTTGATGTTCCTATCCTTAATCTTTGACCTCTGAGCTGAGTTCCCAATAGTGTATTATGTAAGGAAATCTAAGTACAAAACATGTTGACCATTTTTATATGGGAAAAAAACAAATGAGTGATTTTATTTTTGGATCCCTATGTATTAGAAGATAtttctgtgtaaaaaaaaaacaaaaaaaacaagtgtTGTTAGTCTGATGCTCTTCTTTCTCTTACCCAAATCGTTCCACTTAACATTGGCAGCAAATGTTTCAGGGCGTAGTGGCTCTAAGTTAGATGAAAAGGGGGGGATAAAGAAATATTGTCCTCTCCAAACTGAACTGATGATCTCTCTGGTGAAATTCCTTTCTCATGCTGGTCTGTGATGAACTATATTCCCTCCTTCAATCTATGTTTTGAAGTAAGTTACAAACTGGCAAAAGCAGTCATCATCGCGTTCTGATCCTCATCAACACAGTGTCAACAGATTCAGAGACACCCAGGCAGCTGCACACACTCGTACAGTACGTgtgaatgtgcacacacacagctgatCAAATATGCACTGTTCTGTGtatatagagaatatatatattttgtattaccAGCATTTGTGGAGTTAAATGTGTAATGAACTACATGTGTGAGACCGCAATAGTGAACCAGGGTTCCAGACGAAGACAGGATAAGAGAAGGTTTTGAGGGGTTTTAGGTGTAATGCACATTGAATTAACATCTATCATTCATCTGGGTCCCCTTGCCTTTGTCGTTGTTGTTTTTCTTACCTGTTTCACTCACTTTACAACATTATCTGCGGCACTCTTGGTTTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602458.2 False 2831 mRNA 0.43 10 44720664 44748569
TU53574 True 1589 TUCP 0.42 7 44720705 44748005

Neighbor

gene id symbol gene type direction distance location
cnot1 LOC106573200 coding upstream 38708 44663927 ~ 44681956 (+)
kdm7ab LOC106573199 coding upstream 73243 44598632 ~ 44647421 (+)
LOC118964638 NA coding upstream 252205 44456457 ~ 44468459 (+)
LOC110523481 LOC106573277 coding upstream 352634 44360935 ~ 44368030 (+)
LOC110523475 LOC106573196 coding upstream 360406 44276332 ~ 44360258 (+)
LOC110523610 LOC106573209 coding downstream 1189 44749758 ~ 44787067 (+)
vac14 vac14 coding downstream 108339 44856908 ~ 44886958 (+)
trnag-gcc NA coding downstream 120501 44869070 ~ 44869140 (+)
galnt18a LOC106573212 coding downstream 212632 44961201 ~ 45062434 (+)
LOC110523657 NA coding downstream 323399 45071354 ~ 45072433 (+)
G47906 NA non-coding upstream 6830 44712220 ~ 44713834 (+)
G47926 NA non-coding upstream 31866 44688444 ~ 44688798 (+)
G47925 NA non-coding upstream 32649 44687816 ~ 44688015 (+)
G47922 NA non-coding upstream 36976 44683327 ~ 44683688 (+)
G47915 NA non-coding upstream 61308 44659152 ~ 44659356 (+)
G47980 NA non-coding downstream 26267 44774836 ~ 44776546 (+)
G47984 NA non-coding downstream 44277 44792846 ~ 44793104 (+)
G48005 NA non-coding downstream 91499 44840068 ~ 44840557 (+)
G48010 NA non-coding downstream 96550 44845119 ~ 44845375 (+)
G48033 NA non-coding downstream 153984 44902553 ~ 44902790 (+)
G47667 LOC106573189 other upstream 576948 44139091 ~ 44143716 (+)
G47595 NA other upstream 672653 44044670 ~ 44048011 (+)
G47467 NA other upstream 917701 43802513 ~ 43802963 (+)
G47212 NA other upstream 1107610 43612430 ~ 43613054 (+)
G45870 NA other upstream 1829071 42891218 ~ 42891593 (+)
G47910 LOC106573211 other downstream 41061 44789630 ~ 44791090 (+)
G48976 NA other downstream 396709 45145278 ~ 45146640 (+)
G49142 NA other downstream 666137 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 986484 45730241 ~ 45736780 (+)

Expression


Co-expression Network