galnt18a (LOC106573212)


Basic Information

Item Value
gene id galnt18a
gene name LOC106573212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44961201 ~ 45062434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978259.1
TACAATTGGATAGTGTAATGATCGGATATGCCCTGTACATTTCCGGAGGATTTCATTGGCCGCCAGCTCTACGATTACTTTGTAGCAGCGGATTTCAGCTGGTGCCCGGTACGGTATAGTATAGCGCATCTACGAATTTACGTTTCTGTGTTTGCGTTGCTGTCAATCTCAGCAGGCTATAATCCTGGATGATCTGAAACTACGGTACTGTCATTTAGTTTTGTGAGTTTTTTTTAATATTGCGTTTGTATACGCATTGGACCGTATGGAGGGATGTCGCGATGATGGTCTGCTCTAGGAGAACCAAAACTTTGGTGTCGACATGCGTAATTTTGAGTGGCATGACCAATATTGTCTGTCTTCTCTACGTCGGCTGGATCACTAATTATGTGGCCAATGTGAACACCAAAGTATCAGAGACAGAACCGGAGAGAAAGTTTGAAGATGACAACAAGGGAGAAACTCTGAAGATTATAGAGAGACTGGACCGACTGGAAAATGTGGTCAACCAACACATCCAAGAGGTGCCCCAGAAGGGTAGTGATGAAAAAGTGGAGTCCCTCTCCGACTCCTCCCTGTTTGTCCGCTGGGGTCATGACCTTGGTCCTGAGAGTCGCCGTGTGGCGCTGAAGAAGTTCCAGTACTACGGCTACAACGGTTACCTCAGTGACCGCCTCTCTCTGGCCAGACCCATCCCCGACCTCAGACCCGATGGGTGCAGAAACATGTCGTACCCCACCAATCTCCCACAAGTAAGTATCATATTTATCTTTGTGAATGAGGCCCTGTCGGTCATCCTGCGCTCCATCCACACAGCCATGAACAGgactccctcccacctcctcaagGAGATCATCCTGGTCGACGACAACAGCAACAATGCTGAGCTGAAGGAGAACCTGCAGAACTTTGTGAAGGAAACCAACTCCCAGCGGCCAGACTTCATCAAGGTGGTCCGCCACGACAAGCAGGAGGGGCTGATCCGCTCCCGGGTCAGTGGGTGGAGGGCCGCCAGCGCCCCCGTCGTGGCCCTGTTCGATGCCCACGTGGAGTTCAACATTGGATGGGCCGAGCCCATTCTTCTCAGGATCAAGGAAGACAGAACGCGCATCGTCTCGCCGTCGTTTGACAACATCAAGTATGATACGTTTGAGATCGAGGAGTATCCGCTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGTCGCTACCTGAACCCGCCCAAAGCCTGGTGGACCCAGTACAACCACACCGCCCCTATCAGGAGCCCAGCTATTATTGGCTGTTTTGTGGTGGACAGGAAGTACTTTGAGGAGATTGGCCTATTGGATGAGGGAATGGAGGTCTATGGTGGAGAAAATGTGGAGCTTGGCATCAGGGTATGGCAgtgtgggggcagtgtggaggTCCTACCCTGTTCTCGGATAGCCCATATCGAGCGTGCTCACAAGCCCTACACTCAAGATCTGACTGCTCATGTGCGGCGGAATGCGCTGAGGGTGGCCGAGGTGTGGATGGACGAATACAAGAACCACGTTTACATGGCCTGGAACATTCCTCCACAGGACTCAGGGATTGACATAGGGGACCTCACGGAGAGGAAGGCTTTGAGGAACAGACTGCAGTGTAAATCTTTCAGGTGGTTCTTGGCCAACATCTACTCTGAGATGAGAACCTACAGTGACACTGTTGCTTATGGAGTGgTAAAGAACATGCTGAGGAATGACCTGTGTCTAGATCAGGGGCCTGACTCGGACAACATCCCCATCCTGTACCTCTGTCATGGGATGACACCACAGAACGTGTACTACACAAACTCACATCAGCTTCACCTGGGGGTCCTGAGCCCCACCATCGATGACGATGACAACAAGTGCCTGGTGGATGTGAATAACCGGCCGCGGCTCCTGGAGTGCAGCTACGCCACAGCCAAGCGCATGAAGCTCGCCTGGCTGTTTACTCAGGGACTGAGGAGTTTGGCACATGCAAACGCCAGGGTTGTGAGTTCGATTCCCACGGAGGGCCAGTACGAAGAAGGAGGCTCCATAGAAAACATGAATTCCAAACGTTGCCTGGAGCTGGTAGAGAACGGCGAAACGGAGTTTGGCTACCAGCTGGCCATACAGAAGTGCTCTGGTCAGAAATGGACAATCACCAACCTACTGTCAACCTACACTCTCCAATGAGGGGATCCTGAGTCCTGCAGGGGAAAGAGCTGCCCATGGTGAACACTGGACCTGTGACTGACAGACATAGAAGCTTTGCTTCTTTAAAAATCTATTTATTGAGGCAATAATTGAATTATGAGTATGCTGACACTTTTAGTACCTTGATGTCTCTTAGACTCAAAGACATCATTTGATAAATGTAAACAATGTCCTTTGTTAATATATGGGATTGAACTGGCAGACTTGGGTCTATAGTGAGACTTACATGTTTCAATGTATTTTGAGCAGATTGTCTTTTGTCCCACTGAATTCAGGCTTGCGTTGGCTCTAATATACATTGTAATTTATGCTACTGTGTAGCATGTTTTTGAAAAACCTTTGTTATTCTTGTTTGGTTTGTTTCTCAGGTTTGTAGATTGAATGTTATTATGAAATCAAGTCGGTGGTTTCAAAGAACTGTTGCCAATATGTTGGGAGAATATACAAGCTATTTTATAAGTGTATACTGGATATTTATAAAAACCTACAGTAAAAATGCTGATGACAATTCA
>XM_036978276.1
CAATTGGATAGTGTAATGATCGGATATGCCCTGTACATTTCCGGAGGATTTCATTGGCCGCCAGCTCTACGATTACTTTGTAGCAGCGGATTTCAGCTGGTGCCCGGTACGGTATAGTATAGCGCATCTACGAATTTACGTTTCTGTGTTTGCGTTGCTGTCAATCTCAGCAGGCTATAATCCTGGATGATCTGAAACTACGGTACTGTCATTTAGTTTTGTGAGTTTTTTTTAATATTGCGTTTGTATACGCATTGGACCGTATGGAGGGATGTCGCGATGATGGTCTGCTCTAGGAGAACCAAAACTTTGGTGTCGACATGCGTAATTTTGAGTGGCATGACCAATATTGTCTGTCTTCTCTACGTCGGCTGGATCACTAATTATGTGGCCAATGTGAACACCAAAGTATCAGAGACAGAACCGGAGAGAAAGTTTGAAGATGACAACAAGGGAGAAACTCTGAAGATTATAGAGAGACTGGACCGACTGGAAAATGTGGTCAACCAACACATCCAAGAGGTGCCCCAGAAGGGTAGTGATGAAAAAGTGGAGTCCCTCTCCGACTCCTCCCTGTTTGTCCGCTGGGGTCATGACCTTGGTCCTGAGAGTCGCCGTGTGGCGCTGAAGAAGTTCCAGTACTACGGCTACAACGGTTACCTCAGTGACCGCCTCTCTCTGGCCAGACCCATCCCCGACCTCAGACCCGATGGGTGCAGAAACATGTCGTACCCCACCAATCTCCCACAAGTAAGTATCATATTTATCTTTGTGAATGAGGCCCTGTCGGTCATCCTGCGCTCCATCCACACAGCCATGAACAGgactccctcccacctcctcaagGAGATCATCCTGGTCGACGACAACAGCAACAATGCTGAGCTGAAGGAGAACCTGCAGAACTTTGTGAAGGAAACCAACTCCCAGCGGCCAGACTTCATCAAGGTGGTCCGCCACGACAAGCAGGAGGGGCTGATCCGCTCCCGGGTCAGTGGGTGGAGGGCCGCCAGCGCCCCCGTCGTGGCCCTGTTCGATGCCCACGTGGAGTTCAACATTGGATGGGCCGAGCCCATTCTTCTCAGGATCAAGGAAGACAGAACGCGCATCGTCTCGCCGTCGTTTGACAACATCAAGTATGATACGTTTGAGATCGAGGAGTATCCGCTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGTCGCTACCTGAACCCGCCCAAAGCCTGGTGGACCCAGTACAACCACACCGCCCCTATCAGGAGCCCAGCTATTATTGGCTGTTTTGTGGTGGACAGGAAGTACTTTGAGGAGATTGGCCTATTGGATGAGGGAATGGAGGTCTATGGTGGAGAAAATGTGGAGCTTGGCATCAGGGTATGGCAgtgtgggggcagtgtggaggTCCTACCCTGTTCTCGGATAGCCCATATCGAGCGTGCTCACAAGCCCTACACTCAAGATCTGACTGCTCATGTGCGGCGGAATGCGCTGAGGGTGGCCGAGGTGTGGATGGACGAATACAAGAACCACGTTTACATGGCCTGGAACATTCCTCCACAGGACTCAGGGATTGACATAGGGGACCTCACGGAGAGGAAGGCTTTGAGGAACAGACTGCAGTGTAAATCTTTCAGGTGGTTCTTGGCCAACATCTACTCTGAGATGAGAACCTACAGTGACACTGTTGCTTATGGAGTGgTAAAGAACATGCTGAGGAATGACCTGTGTCTAGATCAGGGGCCTGACTCGGACAACATCCCCATCCTGTACCTCTGTCATGGGATGACACCACAGAACGTGTACTACACAAACTCACATCAGCTTCACCTGGGGGTCCTGAGCCCCACCATCGATGACGATGACAACAAGTGCCTGGTGGATGTGAATAACCGGCCGCGGCTCCTGGAGTGCAGCTACGCCACAGCCAAGCGCATGAAGCTCGCCTGGCTGTTTACTCAGGGACTGAGGAGTTTGGCACATGCAAACGCCAGGGTTGTGAGTTCGATTCCCACGGAGGGCCAGTACGAAGAAGTATGAAAATCTATGcactggataaaagcgtctgctaaattactaaaatGGAGGCTCCATAGAAAACATGAATTCCAAACGTTGCCTGGAGCTGGTAGAGAACGGCGAAACGGAGTTTGGCTACCAGCTGGCCATACAGAAGTGCTCTGGTCAGAAATGGACAATCACCAACCT
>XM_036978266.1
AATTGGATAGTGTAATGATCGGATATGCCCTGTACATTTCCGGAGGATTTCATTGGCCGCCAGCTCTACGATTACTTTGTAGCAGCGGATTTCAGCTGGTGCCCGGTACGGTATAGTATAGCGCATCTACGAATTTACGTTTCTGTGTTTGCGTTGCTGTCAATCTCAGCAGGCTATAATCCTGGATGATCTGAAACTACGGTACTGTCATTTAGTTTTGTGAGTTTTTTTTAATATTGCGTTTGTATACGCATTGGACCGTATGGAGGGATGTCGCGATGATGGTCTGCTCTAGGAGAACCAAAACTTTGGTGTCGACATGCGTAATTTTGAGTGGCATGACCAATATTGTCTGTCTTCTCTACGTCGGCTGGATCACTAATTATGTGGCCAATGTGAACACCAAAGTATCAGAGACAGAACCGGAGAGAAAGTTTGAAGATGACAACAAGGGAGAAACTCTGAAGATTATAGAGAGACTGGACCGACTGGAAAATGTGGTCAACCAACACATCCAAGAGGTGCCCCAGAAGGGTAGTGATGAAAAAGTGGAGTCCCTCTCCGACTCCTCCCTGTTTGTCCGCTGGGGTCATGACCTTGGTCCTGAGAGTCGCCGTGTGGCGCTGAAGAAGTTCCAGTACTACGGCTACAACGGTTACCTCAGTGACCGCCTCTCTCTGGCCAGACCCATCCCCGACCTCAGACCCGATGGGTGCAGAAACATGTCGTACCCCACCAATCTCCCACAAGTAAGTATCATATTTATCTTTGTGAATGAGGCCCTGTCGGTCATCCTGCGCTCCATCCACACAGCCATGAACAGgactccctcccacctcctcaagGAGATCATCCTGGTCGACGACAACAGCAACAATGCTGAGCTGAAGGAGAACCTGCAGAACTTTGTGAAGGAAACCAACTCCCAGCGGCCAGACTTCATCAAGGTGGTCCGCCACGACAAGCAGGAGGGGCTGATCCGCTCCCGGGTCAGTGGGTGGAGGGCCGCCAGCGCCCCCGTCGTGGCCCTGTTCGATGCCCACGTGGAGTTCAACATTGGATGGGCCGAGCCCATTCTTCTCAGGATCAAGGAAGACAGAACGCGCATCGTCTCGCCGTCGTTTGACAACATCAAGTATGATACGTTTGAGATCGAGGAGTATCCGCTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGTCGCTACCTGAACCCGCCCAAAGCCTGGTGGACCCAGTACAACCACACCGCCCCTATCAGGAGCCCAGCTATTATTGGCTGTTTTGTGGTGGACAGGAAGTACTTTGAGGAGATTGGCCTATTGGATGAGGGAATGGAGGTCTATGGTGGAGAAAATGTGGAGCTTGGCATCAGGGTATGGCAgtgtgggggcagtgtggaggTCCTACCCTGTTCTCGGATAGCCCATATCGAGCGTGCTCACAAGCCCTACACTCAAGATCTGACTGCTCATGTGCGGCGGAATGCGCTGAGGGTGGCCGAGGTGTGGATGGACGAATACAAGAACCACGTTTACATGGCCTGGAACATTCCTCCACAGGACTCAGGGATTGACATAGGGGACCTCACGGAGAGGAAGGCTTTGAGGAACAGACTGCAGTGTAAATCTTTCAGGTGGTTCTTGGCCAACATCTACTCTGAGATGAGAACCTACAGTGACACTGTTGCTTATGGAGTGgTAAAGAACATGCTGAGGAATGACCTGTGTCTAGATCAGGGGCCTGACTCGGACAACATCCCCATCCTGTACCTCTGTCATGGGATGACACCACAGAACGTGTACTACACAAACTCACATCAGCTTCACCTGGGGGTCCTGAGCCCCACCATCGATGACGATGACAACAAGTGCCTGGTGGATGTGAATAACCGGCCGCGGCTCCTGGAGTGCAGCTACGCCACAGCCAAGCGCATGAAGCTCGCCTGGCTGTTTACTCAGGGAGGCTCCATAGAAAACATGAATTCCAAACGTTGCCTGGAGCTGGTAGAGAACGGCGAAACGGAGTTTGGCTACCAGCTGGCCATACAGAAGTGCTCTGGTCAGAAATGGACAATCACCAACCTACTGTCAACCTACACTCTCCAATGAGGGGATCCTGAGTCCTGCAGGGGAAAGAGCTGCCCATGGTGAACACTGGACCTGTGACTGACAGACATAGAAGCTTTGCTTCTTTAAAAATCTATTTATTGAGGCAATAATTGAATTATGAGTATGCTGACACTTTTAGTACCTTGATGTCTCTTAGACTCAAAGACATCATTTGATAAATGTAAACAATGTCCTTTGTTAATATATGGGATTGAACTGGCAGACTTGGGTCTATAGTGAGACTTACATGTTTCAATGTATTTTGAGCAGATTGTCTTTTGTCCCACTGAATTCAGGCTTGCGTTGGCTCTAATATACATTGTAATTTATGCTACTGTGTAGCATGTTTTTGAAAAACCTTTGTTATTCTTGTTTGGTTTGTTTCTCAGGTTTGTAGATTGAATGTTATTATGAAATCAAGTCGGTGGTTTCAAAGAACTGTTGCCAATATGTTGGGAGAATATACAAGCTATTTTATAAGTGTATACTGGATATTTATAAAAACCTACAGTAAAAATGCTGATGACAATTCA

Function

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase 18-like isoform X2

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978259.1 False 2719 mRNA 0.49 12 44961201 45062434
XM_036978276.1 False 2208 mRNA 0.52 12 44961203 45061876
XM_036978266.1 True 2644 mRNA 0.49 11 44961204 45062434

Neighbor

gene id symbol gene type direction distance location
vac14 vac14 coding upstream 74243 44856908 ~ 44886958 (+)
trnag-gcc NA coding upstream 92061 44869070 ~ 44869140 (+)
LOC110523610 LOC106573209 coding upstream 174134 44749758 ~ 44787067 (+)
e2f4 LOC106573204 coding upstream 212632 44720664 ~ 44748569 (+)
cnot1 LOC106573200 coding upstream 279245 44663927 ~ 44681956 (+)
LOC110523657 NA coding downstream 9534 45071354 ~ 45072433 (+)
LOC110523687 LOC106573214 coding downstream 30548 45092982 ~ 45115348 (+)
LOC110523812 facr1 coding downstream 365236 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 389602 45452036 ~ 45454827 (+)
LOC110523825 LOC106573223 coding downstream 404062 45466496 ~ 45471513 (+)
G48039 NA non-coding upstream 47968 44913009 ~ 44913233 (+)
G48035 NA non-coding upstream 55177 44905805 ~ 44906024 (+)
G48033 NA non-coding upstream 58411 44902553 ~ 44902790 (+)
G48010 NA non-coding upstream 115826 44845119 ~ 44845375 (+)
G48005 NA non-coding upstream 120644 44840068 ~ 44840557 (+)
G48896 NA non-coding downstream 1983 45064417 ~ 45064653 (+)
G48912 NA non-coding downstream 10473 45072907 ~ 45073111 (+)
G48913 NA non-coding downstream 10749 45073183 ~ 45073507 (+)
G48920 NA non-coding downstream 15937 45078371 ~ 45078666 (+)
G48976 NA non-coding downstream 83027 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 170111 44789630 ~ 44791090 (+)
G47667 LOC106573189 other upstream 817485 44139091 ~ 44143716 (+)
G47595 NA other upstream 913190 44044670 ~ 44048011 (+)
G47467 NA other upstream 1158238 43802513 ~ 43802963 (+)
G49142 NA other downstream 352272 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 672619 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 929839 45992273 ~ 45992891 (+)

Expression


Co-expression Network