LOC110523718 (LOC106573216)


Basic Information

Item Value
gene id LOC110523718
gene name LOC106573216
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45250014 ~ 45256049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602659.2
TTGCATAGAAATGTACACACAGCCGTGCGTGCCGACCGAGAGGAAGGACGTCCGTTCCTCCTCTGCGCACAGTGTTCCAAAAGGAAGTCTGCGGGGATAATGTAATGCCCCCCCTGCTGAACAACTTCCCAGTGTGCCTCTTGAGTCTGCTACGGGAATAATCCTACATAGAGGGAAGTACTGAGCTGATTATTTCATGAGAATGATGACATGCCTACATAAGAATAAGGACAGCTCCAAACGAAGGTGTGTGATACACTTTTCTCTTAACGCCTGAAAACGGACCGAGGAGTCGAGAGAGGAGCAGAAACTTTGATAAGCAATTCGGTTTGAGTTTTTTTTCTTCCCAGTATGGAGCAGGAAGAATGCAAGGTATCAGTATGGGTCTGCCGGGAGGAGAAGCTGGTCTCAGGGCTGTCCAAACGCACCACCTGCGCGGATGTTGTAAAAGTTCTACTGGAGGACCAAAACTTGCCGCAAGGTGCGTCAGCGGCGATGCAGTCTGGGACCCCCCAGTCTTACTGCATTGTGGAGAAATGGAGAGGCTTTGAGAGGATGTTACCCAATAAAACCAAAATCCTGCGTCTCTGGAGCGCCTGGGGAGATGAGCAGGAAAACGTGAGGTTTGTGTTGGTGAAGAATGAGGCATCGTTACCGAACAACGGACCCAGGAGCGCCGAGGCGCGAGTCGTTCAGAGCAAAGACAATCCGTGCGTATTCAAGGGAGCAGCCAAGACCACAATGGCTTTCTCACAAGAAAAGCAACGGAGGATTGTTAGAAAAGCTTTTAGAAAGTTGGACAAAATTAACAAAAAGAGAGAAGAGACTTTTCCTAAGGATAAATCCTCAGTGGAGAAATTGGAAACGTTTGTGCACTTGGTTATCTCGCAAGATCACACCATCCGCCAGCAGATCCAAAGGATCAAAGAGTTGGATAGGGATATAGAGATGTATGAGGCAAAAGTGCACTTTGACAGAATTAAGAGACATGGTATCAATTATGTGCAGGACACATACATGGTGGACTCGAGCGTGGAGGCTGATCCAATAGAGGACGTTCCACGTTCAGCGGAGGCTATTGCGCAGTTTGAGGAGTACGCTCTTAGGTGCGAGGAGGTCCTGCGACTTCAGGAGGAGTTGACAGAGCGCGAAGCTCTCATGGAATGCATCACAGGTGAAATTCAGGAGGAGCTAAACCAAAGGTGGATGAAAAGACGGCAAGATGAGCTGTCGGGCAAAGACACAGAACGTTTTGGGGAGTCTGTGGACATCCCCGTAGCTGCAGTGGCTCCACAGCCGGCAGCACAGTCAGTTGCCGCCGCCCCAGAGCCAGATGTGAACAGTCTATCAGATAACGACTTGGTTTTAGAGGGGAAGATAATCAAATCAAAGCTGGATACCAGTTTATATATTGGTCTTCGTTTAAACACGGATTTAAAGGCTGTTAAGGGTGATTTGGACTTAAGCCAGGAGCTATGGGACGCGAAAGAAAAAGAACTAACGGATTTGCTCGCAAAAATGCACTCTATGAATTTAAATAAGGAAAAGTTACTCGAGGCTGATAAAGAACACTCTGAGACTGACATGTTGCCTTCCTTGGAGAAAAGCGGTGGGTGGGTGGAGCAGACCAGAGGTCTGTCCAAGACCTGCGACATGAACGACGAAGATTCAGACACGGGGCTGAGCTCCATGCATAGCCAGGACTCTGACAATACACCTGTGTGTGAATCACTGGTGTAGCTAACTCTTTATTGAACTTTTGAAAAATATGCAACGCAAACTCAGGGACAGTGGAATTCTCTACACTAAACAATATGTTTCTCCGTTTCCTTCAAAAGGCTTCAGCATGGACACCGTACATATATGTATGATAGTCAACTCACTCCACAATAGCTTGTCTTTAAATAGGCCACTCTCAGATATTCAGCCAGTATAGACAAGCAATAGAATTTACGATCATATTATGCCAATTGTGCTGAAATCCTGACAAAAGTTGTGGAAAGTGGATATAGCTTGCTATGCTGTTTCTGTGTCACAAGTACTATTTATCAGAACATGTTTAGAATTAGGGAAAACAACAACTGCATTGAACTGCAAAGACCCACATCACTATGAGCATTCAACGATAAACATACAGGTTACTGTGGAAATAAAGTATTAACAAATATTGATCTGTTTGATTTAGCACATGTATAAGTAGGACAAATGGTTTAAGAGTTGGCTATGCAAATCACATATTTCATTTGCATTGGAATTAGTCCTACCTCACGAGAAAGTCAAACGTTGTAGATAGATGTTTTGCATCCTTTAGGGGCCATGCTTTgggggtgtgtgatgtgtgcgtGTCATGTTCTGCTGTTTTTAATTGGAGTCTGTGGAGTAGCAGAGCATGAACTTCTGCATTAATGATGATTAGTGTAAATGCATGCCTTTTTACTAAACTGTTTCACTAACAGAGCAAACTGTTCACTATTAACCAAGCGAGGGAATTTTTACTGTTAGGTTTGTAACTTTCATGCCAAACTTTTCACTGTACTCTGAAGTGGGTGTTCAAAAAGTTGGATAGGTGCCAGTGCATTAAACTGCAACTCTATTCTATCCATCTGGAGGCAGTATCTGCTGGCCATCTTTAGGCCTACAgatttctgttgttgtttttgtaacACTATCTGCCTAGGAGAGCCAGGCTCAAACCTGCCGAGATGTAGCATTTCCCAGAGGGTAACTTCTAGAAATATCAAAATACATTCTCCAGAGGGAGGTTTTTGTTAATTGATCATGTTGTTTCAGCATGACTAACCTTTCATATTCAGATGCCAGGCTGCTGATGCAAATCCAATGCAAATTGGCCAGACTAGCTGTCACCTTACCCAGTAATTGTTTAATTCATCCGTGTAGTTGATCCTCACTTTCTCTCCGGTTGCTTGACAGCATGATACCAATACCCTATTGATGGCAATGCCCTATTCAGTTACCGTACAATTTGTTGTGCCAATCAACCTCATGGATCGGTAGTTCTCAGCATGCTTTATATCAGGACAACCACTTGAGAGCTCTAATCTAATCAGTCTATCAGGAGTCAGTACAAGTAATAGAAACTGCAGTGTATATGAACGCTGGGAAAGCTAAGACAGACAACATACAACATCCCAAAGTCAAAACCCAGACTGTTTCTGTTTATGCAACCCAGTCTGCTTTTGTGTTTGGGCGTTATGTGTTGTTGTGCCCCCCCTGTGTGCTCCCTGGGCTGTGTTTGGCACTGGGCAGCAGGGCTGTATGAAAGCAGCCAGAGAGCAGCTGCCTAGCCTGGCTCACTCTGTTGAAAACAGTGGAGTTTACATAAGTCAGAGATGAAGGCTGGGCCAGGCCTtatgttctactgttctggggtgagctgggactgggactgtgtGAGAAGGGATGTCTGTGTTTCAGATCCAGAGGATTTGAGTCCCCAACAGCCTAGTGCCACATGATGCTTTAAATATGACTTTAGACAACAGAGGGGGAGACTCCGCTTATGGAATATGCCTTCAAATGGTTGTTATTCATATCCAGGCATTTCTGTCTAAAACATTCATGTCTGGGATTGACGATTTGCAGGTGTCAGATGTGACACTAATACTCTGTTGGTTctctaaactactgatattagtTGTGCCATATGTATGAAATTGATCCCAGTGAGAGGCAAGtaagcagacaggcaggcaggcagacagacaggcagacagacagacagacacataaagCGTTTTAGTGGATAGCACCCTGGCAACCATCAGTCAGCGATAGCCTAACACTGAAACACAACATTGTTGCATTATCCTCAATCAGCATTTTCACCTCAAACGTATCCATACACTATGCCATATGCagtacttacatttttttttttttaggcatAACCATCTGTGCCAGGGATTTCCTGTACCATTTCTGCTACGTTTTTGTTGTACtattaccccctttttctctccaatttcgtgacatccaattggtagttacagtcttgtcccattgctgcaactcccctactgactcggagaggcgaaggtcgagagccatgcgtcctccgaaacatgaccctgccaagccacactgctcactgaacccggaagccagcaataccaatgtgtcagagaaaaCACCATCCAGCTGATGACCGAAATCAGCTTGCAGGCGCCGGGCACGCCACATGGAGTCACTAAATCCCAGCAGGCCAAACACGCCTCTAACTCGGACAaatctgggccaattgtgtgccgcctcatgggtctcccggttacagccggctgtgacacagcctgggatcgaacccaggtctgtagtgacgccttagaccactgcgccactcgggaggcagtCATTTCTGCTACTTTTGTATGATAACACTATCAGGACGGTTTTATCATAATGGAGTTGCATAATGCAGACATAAGGGAAAAGACACTCTCGGAGAGACCTTCTGCACTCTTCAACCTCCTATTTCACTCATGCAGTGCACCCTTAGTGCAGTGCACCCATGCCCTGGCGATGTTCTCATGGGTCATCAACCTCAGGAGATAGCGGACCTATaaatagttaaagagcagcagccTGTAAGGCCGGGGTCATTCTTACGCCATGTCGAGCTGAATAGGACCAGCCCTCTAAAACATTTAGGGCAGAATCCTGACTTCCACTTCATCTGAATTGTTCAtttgtctcccattgacatcaatgcgtGACAAAGTGATAGAGAATCGCTCCATACAGAAATATTTATGAATAGTCCAATTTAAGAGACTTGTGTGATATTCAAATGTATGCCATGCGTGCATGGTGCAAAACCATTCAGATGAGATGACCCAGGCTCATAATGTGTTCGCTGGAATGAGCCCAGCAGTTAATATCCGTATGGGATCCAATAGGCCCTGGTGGCTGTCGTTAGGAAATACTACTGTCAGGAAAACAATCTGTCCAATATAATAAAACCAACATATATTCCGTCAGACGGACAGACAGCCCGAACATAACACACCTCAAAGTGCTTACTGCCAACCACTCTCATCCCTGTCCAGACCATTAGAGAGGAGTACCCATGTACCAGATAGGCTAGTAGGGGATTATTCTACTCTGGAGCTAGGTGTTCCACAAGTGGCCTGTCAGATGGGTGGCTGAGCCTCTAGTCACACCAAACTCTGGTGCATGTTCAGCAGGGCACAACATTGAAATACGTTCAGGAATAAATATGTTATGTAGAACATGCCTCTCGGACATGTAGTCTCTGCtcatgacatttctatctgcaacgtttgaCCATGTTTTCCTACTGAATGTGGCCCTGAAAGGGTGATATAGAAgagcatagagacagagagagaaggggggggtcTGTCAGAGCTCCTAGAAAAGTGTCTAATTAACTTGATGAGCCTGTCTGCTCTGTTTATCAGTCAGTCTGGCTGGATGAACATGGAACATCCAGACTAAGGCGTGGACTTATAAATATTTGATGACGACAACTCAGCCAGGCTGTGTGGTGCCATCTGACAGAGTaattacacacagacagagccaCTCACAAGCCCTGCCATAACTCACTCACAACCCGAAGAGCCACTCAGCCATATTGATTTATAGGCCTATTATAGAGGGATGGGTTCGTTTGTCTTGCTCCATTCCTAGATCTAAAGCAAAGTAGCTCAACTGGGTTGCTCTAACATGCAGGACCAATTAATGCTATGTAAACCAGTCTGCTATTTTTAAAATACCAGTCTgctatttgtgttttttttggcgCTGATCGTATGCATCGGCAGGACATGACTGCAGCGTCGGGTAAACTCTAGGGgttggtgtgtgtctctttgttaacagctGATGCATGATCTCTAATGTTAAGGAGGTCTTGAGGTTCTGCTCGCTTGAGTTAGAATAGCTCATGATAAgatgtagaccatactatttaccaagagagtttgtgtcttgtaagggttttcctgtggtgaaggagaggcggaccaaaatgcagcgtggtggttattcatgttc
>TU55339
TCAGATGAGATGACCCAGGCTCATAATGTGTTCGCTGGAATGAGCCCAGCAGTTAATATCCGTATGGGATCCAATAGGCCCTGGTGGCTGTCGTTAGGAAATACTACTGTCAGGAAAACAATCTGTCCAATATAATAAAACCAACATATATTCCGTCAGACGGACAGACAGCCCGAACATAACACACCTCAAAGTGCTTACTGCCAACCACTCTCATCCCTGTCCAGACCATTAGAGAGGAGTACCCATGTACCAGATAGGCTAGTAGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602659.2 False 6036 mRNA 0.45 1 45250014 45256049
TU55339 True 271 lncRNA 0.47 1 45250943 45251213

Neighbor

gene id symbol gene type direction distance location
LOC110523666 LOC106573213 coding downstream 107699 45115903 ~ 45142315 (-)
LOC110520774 NA coding downstream 348403 44900676 ~ 44901611 (-)
mmp15a LOC106573210 coding downstream 414528 44821497 ~ 44835486 (-)
LOC118960022 LOC106573206 coding downstream 432473 44816985 ~ 44817541 (-)
LOC110523630 LOC106561447 coding downstream 439634 44793384 ~ 44810380 (-)
LOC110523724 LOC106573217 coding upstream 1187 45257236 ~ 45299871 (-)
parvaa LOC106573218 coding upstream 48589 45304638 ~ 45321671 (-)
LOC110523755 NA coding upstream 69860 45325909 ~ 45414664 (-)
LOC118964648 NA coding upstream 220604 45476653 ~ 45477841 (-)
LOC110523834 LOC106573224 coding upstream 220604 45476653 ~ 45587081 (-)
G49524 NA non-coding downstream 6021 45243773 ~ 45243993 (-)
G49510 NA non-coding downstream 29095 45220667 ~ 45220919 (-)
G49489 NA non-coding downstream 51073 45198606 ~ 45198941 (-)
G48907 NA non-coding downstream 180335 45069424 ~ 45069679 (-)
G49456 NA non-coding upstream 67156 45323205 ~ 45324572 (-)
G49555 NA non-coding upstream 82806 45338855 ~ 45339150 (-)
G49556 NA non-coding upstream 83176 45339225 ~ 45359551 (-)
G49560 NA non-coding upstream 104594 45360643 ~ 45382138 (-)
G49459 LOC108441480 non-coding upstream 179623 45435672 ~ 45451731 (-)
tspan9a LOC106573177 other downstream 2120985 42852829 ~ 43129052 (-)
G41868 NA other downstream 6227989 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7058278 38187488 ~ 38191736 (-)
G40732 NA other downstream 7124289 38125280 ~ 38125725 (-)
G40079 NA other downstream 7532981 37716540 ~ 37717033 (-)
G49774 NA other upstream 464756 45720805 ~ 45721124 (-)
G49962 NA other upstream 692909 45948958 ~ 45949951 (-)
G51214 NA other upstream 1808725 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 2032890 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 2121592 47377641 ~ 47378543 (-)

Expression


Co-expression Network