parvaa (LOC106573218)


Basic Information

Item Value
gene id parvaa
gene name LOC106573218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45304638 ~ 45321671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602721.2
CCAGAGAATGGAGAGATGGGCTGTGGAGCACTCTGCCCACCAGTGTCTGAGCTCCAGGAAGAGGGGATGAACGCCATCAACCTGCCCTTGAGCCCCACCCAATACGAACTGGACCCAGAAGACACCATGCTAGAGGAGAATGAGGTCCGCACCATGGTCGACCCCAACTCCAAGAACGACCAGAAACTACAGGAACTCCAGAAGGTGTTGATCGACTGGATCAATGATGTGTTGGTGGGGGAGAGGATCATCGTGAAGGACCTGGCTGAGGATCTATACGACGGGCAGGTTCTGCAGAAACTCTTTGAGAAGCTGGAGGGGGAGAAGCTAAACGTAGCTGAAGTGACCCAGTCGGAGATCGCCCAGAAACAGAAACTACAGACGGTGCTGGAGAGGATCAACGACTCCATCAAGGTCTCTGCCAGGAGCATCAAATGGAACGTGGACTCGGTCCATGCTAAGAGTATAGTGGCCATTCTTCACCTGTTGGTGGCGCTATCTCAGCACTTCAGAGCACCAATCAGACTTCCTGATCACGTGTCCATCCAAGTAGTGGTGGTTCAGAAAAGGGAGGGGATTCTGCAATCTCGCCAGATCCAGGAGGAGATCACGGGCAATACGGAGGCTTTATCTGGCAGACATGAGCGAGATGCTTTCGACACCCTGTTTGATCACGCTCCAGACAAGCTCAATGTGGTAAAAAAGACTCTCATCACCTTTGTGAACAAACACTTGAACAAGCTCAATCTGGAGGTGGCTGAACTGGACACACAGTTTGCTGACGGTGTGTACCTTGTTCTGCTGATGGGATTGCTGGAGGGCTACTTTGTTCCACTCTATAATTTCTTCCTGACTCCTGAGAACTTTGAACAACAGGTGCACAACGTGTCCTTCTCTTTTGAGCTGATGCAAGACGGAGGTTTGGAGAGACCCAAACCTAGACCTGAAGATATTGTGAACTGTGACCTCAAGTCAACCCTGAGGGTGCTGTACAACCTCTTCACCAGGTACAGAAACGTGGAGTGAATATGCTGTGTTGGGGGTGACTCATTTTATGGGGTATCACATTCAAGTTTCAAGCGTTTTTCCCCAATTACATGCTTCAAAGGAAGTTGTCCCTTGCAAAGAACACTACGAACCAATTCAGGACATTCAGCATTGGtattatcaatattttttttatagattCCATTATTCCAAATATTTGATGTGCTATAATAATAACTTCTACTATTGTATGTGCTGTTTGACATTTTAAAATACACTACATAGTGTATGTATTTTTGTTTCTTAAATGAATGCATATTACTCTAAGTAAAAACAGTCATTGTATGATTGGTATTTTAATTATATTTTTAATAGATGaaaattccattttttttttcttaatgTCATATTTCAAAAGGTTGATATAGTGATGAAATTTCTTCATGTTTCCATCGCTAAAGTTAAAGTCCATCGCTAAAGTTTCATTTATTTACTAAACAAATGTTTGTTAACCTACATTTATTGTGCTTTTGTGTGCACCTGGCCTTCTCATTCACTTAGCTGTTTTCTACTTTCACTAGTGGATAAGTGCCTTTTTAATAATAAAAAGACTGTACTGCATGCCATTTATTAGGAAGACACCACTTAAAGTGCTGACTGTGACTGAATATGCTCTTTTTCTTTATTCTCAAAACTGCTTTGCACGTCTCATATATGTTAAATGTTTTAATAACCCCAAACTGAAATTCCTAAAATGTTGTAATGTTAAAACAATCTTTGTAAAGGAACGGAAGGTCTCCCTCACGGTAACACTTtgtttggatagtccatctgtagatgttctacagcagtggtcaccaacctttttgGAGTCCATCagtttctgagtcaaaatgcaagccgagcTCTACTGTGGAACAtgtgttaaaaaaataataataataataacttgaACGTAAACCTATGCAACATCACCCTATTAAAAACAGCACTGTATTTAATGAGGTTTGTACAgaacattatcactgcatattggctttgcttgaattgccctgccaatgcattATTCTTCAgaccattaaaaaaatatatatatttgatgtaGGCTATAGGATCACACCAATAATAGATcagttgttgtattacttgtgaagcACGGCTGAGTGAGCGTACATTTTAAATAATTCACTTTTTTTCTGTTTACTGGTCTCacggtgcctgcatctgatggtcagtctcagcggagggagagcgcAGCAGACTGAGGGCCCGTCTCAacatccctctgctctctctttcctccgCTGACACTGACCAAGAAGGGCcaccgtcttccagctgatggcgaaactcgagtcgcaccgcaTTATTTCTGTGTCAGGCACAAAATCATGTTGctactcctatgaacagagaaagtgagatATTCCTCGATATTAAATAAGACCGAAGCCGCTAATAATAACGCAAGCCAATcgatacactttcctactcattctttgctgtatttgttgagtctctctctggtcatggTTTTTAAACGTTTAAAAATCTTACAGCCTCAACTTTGCTGTACCgttcttttacgcctgctacttTTACTGCAGATATGTTAATCTGAGCCATTCGATTGGCCAGTGGTACACCTACACTTCACTTAATTTGCTCCCACCGGGAAGGCatagtttgtaccttcagacttATGAAATGGGAACACCGCCTACCCAGCATACAGGGCAGTTGAATCGAGTGCGTCTACCACTGACAGCGCAAGATGAATTAATAAAATAGGAACACAAGGCTTactgctgttttttttgtttacagAAACGTTTGGCGATtagactaggaatgccttggagatcacTGCTCTatagactatcagtaacatttccactacagtgcattcgtaaagtattcagaccttttgactttttccacattttgttacattacagccttattctaaaatggattaaatggtccccccctcatcaatctatacacaataccctataatgacaaatcGAAAACAGGTTATTCAGaaccgctttgtcattatggagtattgtgtgtagattgagggaacaaATTATCTATTTTAGAAAAGggctaacgtaacaaaacgtgaaaaaagggaatgggtctgaatccttcctgaatgcactgtacctactAATCATATCCTTTAACCCTGACCCTTATTCTttaccctaaccgtaaccttatCAACATATAGTCATActatctgtagagcatctacagatggataATCCGGACTATCCAAATCAAGTGTGACCTCGCTCACTAATGCAGAGGTCTTTTAAAGATTTGTCAAATGTGTGAGAATTGGGGGTTTTGCAAACACTTTTTCAAATGGTATACACTACAAGCTTTTGTATTTTGAGTTAATTCATCCGTAGTTTCTATTGCTCATCTGTTAATTCTGAAATAAAACATTGTCTGTGGA
>XM_021602711.2
CAGTAGGGTTTTATTTACAATAGAAATAGGGGAGGGAACAAGGAAGGGATTTAAGCCTGGATGATATTCCGTTTCCGCTTTAGGGAGTGAAAATTGATTTGAGCAGAACTTGACTTGAAAATCTATTTATTTCAGAGACCCACTCAACTTTTACAATATTGGTTGTACTTTTGGATAAATTGTATCATGGCTACTTCGCCGCAAAAGTCGCCATCCTCTCCGTCGCCGACGACTCCGAAATCACCCTCTTCCAGAAAGAAAGATGACTCGTTCCTGGGAAAACTTGGAGGAACTTTAGTAAGAAGAAAGAAGGCAAAAGAAGTGTCTGAGCTCCAGGAAGAGGGGATGAACGCCATCAACCTGCCCTTGAGCCCCACCCAATACGAACTGGACCCAGAAGACACCATGCTAGAGGAGAATGAGGTCCGCACCATGGTCGACCCCAACTCCAAGAACGACCAGAAACTACAGGAACTCCAGAAGGTGTTGATCGACTGGATCAATGATGTGTTGGTGGGGGAGAGGATCATCGTGAAGGACCTGGCTGAGGATCTATACGACGGGCAGGTTCTGCAGAAACTCTTTGAGAAGCTGGAGGGGGAGAAGCTAAACGTAGCTGAAGTGACCCAGTCGGAGATCGCCCAGAAACAGAAACTACAGACGGTGCTGGAGAGGATCAACGACTCCATCAAGGTCTCTGCCAGGAGCATCAAATGGAACGTGGACTCGGTCCATGCTAAGAGTATAGTGGCCATTCTTCACCTGTTGGTGGCGCTATCTCAGCACTTCAGAGCACCAATCAGACTTCCTGATCACGTGTCCATCCAAGTAGTGGTGGTTCAGAAAAGGGAGGGGATTCTGCAATCTCGCCAGATCCAGGAGGAGATCACGGGCAATACGGAGGCTTTATCTGGCAGACATGAGCGAGATGCTTTCGACACCCTGTTTGATCACGCTCCAGACAAGCTCAATGTGGTAAAAAAGACTCTCATCACCTTTGTGAACAAACACTTGAACAAGCTCAATCTGGAGGTGGCTGAACTGGACACACAGTTTGCTGACGGTGTGTACCTTGTTCTGCTGATGGGATTGCTGGAGGGCTACTTTGTTCCACTCTATAATTTCTTCCTGACTCCTGAGAACTTTGAACAACAGGTGCACAACGTGTCCTTCTCTTTTGAGCTGATGCAAGACGGAGGTTTGGAGAGACCCAAACCTAGACCTGAAGATATTGTGAACTGTGACCTCAAGTCAACCCTGAGGGTGCTGTACAACCTCTTCACCAGGTACAGAAACGTGGAGTGAATATGCTGTGTTGGGGGTGACTCATTTTATGGGGTATCACATTCAAGTTTCAAGCGTTTTTCCCCAATTACATGCTTCAAAGGAAGTTGTCCCTTGCAAAGAACACTACGAACCAATTCAGGACATTCAGCATTGGtattatcaatattttttttatagattCCATTATTCCAAATATTTGATGTGCTATAATAATAACTTCTACTATTGTATGTGCTGTTTGACATTTTAAAATACACTACATAGTGTATGTATTTTTGTTTCTTAAATGAATGCATATTACTCTAAGTAAAAACAGTCATTGTATGATTGGTATTTTAATTATATTTTTAATAGATGaaaattccattttttttttcttaatgTCATATTTCAAAAGGTTGATATAGTGATGAAATTTCTTCATGTTTCCATCGCTAAAGTTAAAGTCCATCGCTAAAGTTTCATTTATTTACTAAACAAATGTTTGTTAACCTACATTTATTGTGCTTTTGTGTGCACCTGGCCTTCTCATTCACTTAGCTGTTTTCTACTTTCACTAGTGGATAAGTGCCTTTTTAATAATAAAAAGACTGTACTGCATGCCATTTATTAGGAAGACACCACTTAAAGTGCTGACTGTGACTGAATATGCTCTTTTTCTTTATTCTCAAAACTGCTTTGCACGTCTCATATATGTTAAATGTTTTAATAACCCCAAACTGAAATTCCTAAAATGTTGTAATGTTAAAACAATCTTTGTAAAGGAACGGAAGGTCTCCCTCACGGTAACACTTtgtttggatagtccatctgtagatgttctacagcagtggtcaccaacctttttgGAGTCCATCagtttctgagtcaaaatgcaagccgagcTCTACTGTGGAACAtgtgttaaaaaaataataataataataacttgaACGTAAACCTATGCAACATCACCCTATTAAAAACAGCACTGTATTTAATGAGGTTTGTACAgaacattatcactgcatattggctttgcttgaattgccctgccaatgcattATTCTTCAgaccattaaaaaaatatatatatttgatgtaGGCTATAGGATCACACCAATAATAGATcagttgttgtattacttgtgaagcACGGCTGAGTGAGCGTACATTTTAAATAATTCACTTTTTTTCTGTTTACTGGTCTCacggtgcctgcatctgatggtcagtctcagcggagggagagcgcAGCAGACTGAGGGCCCGTCTCAacatccctctgctctctctttcctccgCTGACACTGACCAAGAAGGGCcaccgtcttccagctgatggcgaaactcgagtcgcaccgcaTTATTTCTGTGTCAGGCACAAAATCATGTTGctactcctatgaacagagaaagtgagatATTCCTCGATATTAAATAAGACCGAAGCCGCTAATAATAACGCAAGCCAATcgatacactttcctactcattctttgctgtatttgttgagtctctctctggtcatggTTTTTAAACGTTTAAAAATCTTACAGCCTCAACTTTGCTGTACCgttcttttacgcctgctacttTTACTGCAGATATGTTAATCTGAGCCATTCGATTGGCCAGTGGTACACCTACACTTCACTTAATTTGCTCCCACCGGGAAGGCatagtttgtaccttcagacttATGAAATGGGAACACCGCCTACCCAGCATACAGGGCAGTTGAATCGAGTGCGTCTACCACTGACAGCGCAAGATGAATTAATAAAATAGGAACACAAGGCTTactgctgttttttttgtttacagAAACGTTTGGCGATtagactaggaatgccttggagatcacTGCTCTatagactatcagtaacatttccactacagtgcattcgtaaagtattcagaccttttgactttttccacattttgttacattacagccttattctaaaatggattaaatggtccccccctcatcaatctatacacaataccctataatgacaaatcGAAAACAGGTTATTCAGaaccgctttgtcattatggagtattgtgtgtagattgagggaacaaATTATCTATTTTAGAAAAGggctaacgtaacaaaacgtgaaaaaagggaatgggtctgaatccttcctgaatgcactgtacctactAATCATATCCTTTAACCCTGACCCTTATTCTttaccctaaccgtaaccttatCAACATATAGTCATActatctgtagagcatctacagatggataATCCGGACTATCCAAATCAAGTGTGACCTCGCTCACTAATGCAGAGGTCTTTTAAAGATTTGTCAAATGTGTGAGAATTGGGGGTTTTGCAAACACTTTTTCAAATGGTATACACTACAAGCTTTTGTATTTTGAGTTAATTCATCCGTAGTTTCTATTGCTCATCTGTTAATTCTGAAATAAAACATTGTCTGTGGA

Function

NR:

description
alpha-parvin-like isoform X1

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0007155 cell adhesion biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K06275 PARV; parvin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602721.2 False 3457 mRNA 0.41 12 45304638 45320052
XM_021602711.2 True 3736 mRNA 0.41 12 45304638 45321671
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Neighbor

gene id symbol gene type direction distance location
LOC110523724 LOC106573217 coding downstream 4767 45257236 ~ 45299871 (-)
LOC110523718 LOC106573216 coding downstream 48589 45250014 ~ 45256049 (-)
LOC110523666 LOC106573213 coding downstream 162323 45115903 ~ 45142315 (-)
LOC110520774 NA coding downstream 403027 44900676 ~ 44901611 (-)
mmp15a LOC106573210 coding downstream 469152 44821497 ~ 44835486 (-)
LOC110523755 NA coding upstream 4238 45325909 ~ 45414664 (-)
LOC118964648 NA coding upstream 154982 45476653 ~ 45477841 (-)
LOC110523834 LOC106573224 coding upstream 154982 45476653 ~ 45587081 (-)
LOC110523892 LOC106573278 coding upstream 310500 45632171 ~ 45680658 (-)
LOC110523903 LOC106573225 coding upstream 408564 45730235 ~ 45867098 (-)
G49524 NA non-coding downstream 60645 45243773 ~ 45243993 (-)
G49510 NA non-coding downstream 83719 45220667 ~ 45220919 (-)
G49489 NA non-coding downstream 105697 45198606 ~ 45198941 (-)
G49456 NA non-coding upstream 1534 45323205 ~ 45324572 (-)
G49555 NA non-coding upstream 17184 45338855 ~ 45339150 (-)
G49556 NA non-coding upstream 17554 45339225 ~ 45359551 (-)
G49560 NA non-coding upstream 38972 45360643 ~ 45382138 (-)
G49459 LOC108441480 non-coding upstream 114001 45435672 ~ 45451731 (-)
tspan9a LOC106573177 other downstream 2175609 42852829 ~ 43129052 (-)
G41868 NA other downstream 6282613 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7112902 38187488 ~ 38191736 (-)
G40732 NA other downstream 7178913 38125280 ~ 38125725 (-)
G40079 NA other downstream 7587605 37716540 ~ 37717033 (-)
G49774 NA other upstream 399134 45720805 ~ 45721124 (-)
G49962 NA other upstream 627287 45948958 ~ 45949951 (-)
G51214 NA other upstream 1743103 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1967268 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 2055970 47377641 ~ 47378543 (-)

Expression

parvaa(LOC106573218) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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parvaa(LOC106573218) Expression in each Bioproject

Bar chart with 21 bars.
parvaa(LOC106573218) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network