LOC118964647


Basic Information

Item Value
gene id LOC118964647
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45452036 ~ 45454827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051863.1
acaatgaaggctggtcaccagcaaaaccAGCACTGGTCACCAGCATATGCTGTTTTTTTTCAGCAGGGGACTTTGGCCAGACATTATTCTTGGCAATGTAGGAAATCCTTTCTAAAGTACATCCTCTGCCTGCTTCTGTGTTCAGACCATATTTCTACCTCTGCCCAGTGAGCGCTTCCTGCCCAGGACCAGCTGGCTTGTGAGTGGATTGGAATGGACAATAGAACATGGAGACCTAGTTCGAGCCCAGATCTTTTATGCAGTCGGTGTGACAATGGCCACACGGATTTGGTAAGATGGCACCAACGGATATGGGATCAGGCTAATGGAAACCCACTGCACCCACATTCAGCTGGTCGTCTACCTGCCATTCCGAGAGGTGCAGCTGGAGTTGGTGGAGCCAGCTAAGTGCAACAGGACTCTGGGGGTCCTCTGATCTACCCCAGAGAGGATGGCCACTGGGCCATGGTGGGGGTCACCTCCTGGGGGAAAGGCTGTGACCAGAGCCGGATCAACAACAAGGCCGAGTCCCCAGCCAAGATGGGATCCCCCGGGGTCTTTACTGATGTCAAGATGCTCCTGCCCTGGATCGAGAGGAAACTCGGAAGTTAATCTAACACGTTTTAGTCAGTGTGAGCCATGCAGGTCTGGATTTGTTTAATTAATTGGTTTAACAGATGGTCTAACAAATTGTTTGATTTTGTTCATCAGCAGATGCTTCTTCTCATCAATTCCACACTGCATTTACTTGCATGTTTTGAAACTGCGCCCACGTCCTCTTTGTCATCTGATTAGCTACTACATTTCTATTTACACAATAGCTCACTTATGCAATTTGTACAATTAACCTTTACTGTATAATGTGACTGTCGTCTTTGAACAGTGCATTTGATGCCgattgtgtgtgtactgtgttgcAGGACTTTGCAGTGAGGGATAGGCCTGTGAGGGTCTCAAACCCAAACCTTACAGTCTGTCTCGACAACAACGAGTGGGTGTCAGTGTACAGGCCCGTTGCATAGGGGGAGGGAGAGCTGTGCTGAATTGAATGCTCTTATTGAATGCACTTTAATTAAATACGCTTTTAGGCCAATTTACTCCACCACTTGACAGCTGTCatgggcagcaggtagccaagCTGTTAGACAGGCGAGCAGGCAGCCAGAGGGTTGCTGTTATCAAATCCTAGATACCATTGCCtctgttgtgcccttgagcaaggcacttaatgcCTCACAACAACAGCCCCCTGGGCGCCCAGTGTGGaagcccccccacacctctccaaaAACCTGTATGCATGTACTGTAAGTCAAATTCTGGATGGACcttgtgtgcaattgaccaataaagtgatcTTAATCAGTTTAGTCAAAAGGTGGAATACTTGCGACAGTTTATTTTCACAAAGTAATAGATTGACCCTGTAGGAATAGATATACTTTAGATGAAACTGTTCTTGGAACATCAAATGCATCAAATCAGTTTTCCATACTgattctttgtctctctctgtgtacagtggcaagaaaaagtatgtgaacccttggatttaataactggttgaccctcctttggcagtaataacctcaaccaaatgttttctgtagttgtggatcagacctgcagaCTGGTCAGAATTAATTTTGAACCAGTCCTCTTTACAAAactttcagttcagcaatattcttgggatgtctggtgtgaaccgctctcttgaggtcatgccacagcatctcaatcgggttgaggtcagtactctgactgggccactccagaaggcgtattttcttctgttgaagccattcggttttacttctgtgttttgggtcgttgtcctgttgcatcaaccaacttctgttgagcttgataaaatgaattcccaagttttcTGACAACGATGGCAAGCTCTCCAGGCACTGAGGCAGCAAATGATGCTCCGTCCACCACACTtgacagttgggatgaggttttgatgttggtgtgctgtgcctttttttcttcttctccacaCATAtcttgtgtgttccttccaaactggactttcatctgtccacagaatattatACCAGTGTGCAACATACTGGTGCactttggcaaacttcagacgtgcagcaatgttttttttggacagcagtggctttcatggtgtcctcccatgaacaccattcttgtttaatgttttacatatcgtagactcgtcaacagacaTGTTAGCACGTTCCAGAGATTTCTgaaagtctttagctgacactcttcTTAACCTTATTGAGATTACTGCGCTGttctcttgcagtcatctttgtaGAAGGGCCACTCCTAGGgaaagtagcaacagtgctgaactttctccatttagagacaatttgtcttaccgtggactgatgaagatcaaggcttttagagatacttttgtaaccttttccagcttta

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051863.1 True 2433 mRNA 0.45 3 45452036 45454827

Neighbor

gene id symbol gene type direction distance location
LOC110523812 facr1 coding upstream 5623 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 336688 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 379603 45071354 ~ 45072433 (+)
galnt18a LOC106573212 coding upstream 389602 44961201 ~ 45062434 (+)
vac14 vac14 coding upstream 565078 44856908 ~ 44886958 (+)
LOC110523825 LOC106573223 coding downstream 11669 45466496 ~ 45471513 (+)
wt-t1a wt-t1a coding downstream 687179 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 794892 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 1014669 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 1044183 46499010 ~ 46503478 (+)
G49146 NA non-coding upstream 27243 45424592 ~ 45424793 (+)
G49103 NA non-coding upstream 99728 45350934 ~ 45352308 (+)
G49102 NA non-coding upstream 103377 45346523 ~ 45348659 (+)
G49095 NA non-coding upstream 124656 45327105 ~ 45327380 (+)
G49092 NA non-coding upstream 125636 45324868 ~ 45326400 (+)
G49183 ppfibp2 non-coding downstream 49962 45504789 ~ 45515074 (+)
G49221 NA non-coding downstream 115057 45569884 ~ 45570473 (+)
G49288 NA non-coding downstream 199570 45654397 ~ 45703120 (+)
G49335 LOC106573225 non-coding downstream 275414 45730241 ~ 45736780 (+)
G49977 NA non-coding downstream 510390 45965217 ~ 45965531 (+)
G49142 NA other upstream 33856 45414706 ~ 45418180 (+)
G48976 NA other upstream 305396 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 660946 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 704031 44720664 ~ 44748569 (+)
G50010 LOC106573227 other downstream 537446 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1403081 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1772419 47227246 ~ 47260224 (+)
G52080 NA other downstream 2551847 48006674 ~ 48024958 (+)

Expression


Co-expression Network