Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118964648 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 45476653 ~ 45477841 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| rab15 effector protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC118964648 | True | 1189 | mRNA | 0.46 | 1 | 45476653 | 45477841 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523755 | NA | coding | downstream | 61989 | 45325909 ~ 45414664 (-) |
| parvaa | LOC106573218 | coding | downstream | 154982 | 45304638 ~ 45321671 (-) |
| LOC110523724 | LOC106573217 | coding | downstream | 176782 | 45257236 ~ 45299871 (-) |
| LOC110523718 | LOC106573216 | coding | downstream | 220604 | 45250014 ~ 45256049 (-) |
| LOC110523666 | LOC106573213 | coding | downstream | 334338 | 45115903 ~ 45142315 (-) |
| LOC110523892 | LOC106573278 | coding | upstream | 154330 | 45632171 ~ 45680658 (-) |
| LOC110523903 | LOC106573225 | coding | upstream | 252394 | 45730235 ~ 45867098 (-) |
| LOC110523913 | LOC106573227 | coding | upstream | 510105 | 45987946 ~ 46025205 (-) |
| LOC110523921 | LOC106573228 | coding | upstream | 547937 | 46025778 ~ 46076741 (-) |
| tcp11l1 | tcp11l1 | coding | upstream | 607741 | 46085582 ~ 46097107 (-) |
| G49459 | LOC108441480 | non-coding | downstream | 24922 | 45435672 ~ 45451731 (-) |
| G49560 | NA | non-coding | downstream | 94515 | 45360643 ~ 45382138 (-) |
| G49556 | NA | non-coding | downstream | 117102 | 45339225 ~ 45359551 (-) |
| G49555 | NA | non-coding | downstream | 137503 | 45338855 ~ 45339150 (-) |
| G49456 | NA | non-coding | downstream | 152081 | 45323205 ~ 45324572 (-) |
| G49759 | NA | non-coding | upstream | 221315 | 45699156 ~ 45699878 (-) |
| G49777 | NA | non-coding | upstream | 246318 | 45724159 ~ 45724388 (-) |
| G49817 | NA | non-coding | upstream | 314311 | 45792152 ~ 45793197 (-) |
| G49872 | NA | non-coding | upstream | 401950 | 45879791 ~ 45880234 (-) |
| G49907 | NA | non-coding | upstream | 403229 | 45881070 ~ 45939772 (-) |
| tspan9a | LOC106573177 | other | downstream | 2347624 | 42852829 ~ 43129052 (-) |
| G41868 | NA | other | downstream | 6454628 | 39021805 ~ 39022025 (-) |
| G40768 | LOC106573348 | other | downstream | 7284917 | 38187488 ~ 38191736 (-) |
| G40732 | NA | other | downstream | 7350928 | 38125280 ~ 38125725 (-) |
| G40079 | NA | other | downstream | 7759620 | 37716540 ~ 37717033 (-) |
| G49774 | NA | other | upstream | 242964 | 45720805 ~ 45721124 (-) |
| G49962 | NA | other | upstream | 471117 | 45948958 ~ 45949951 (-) |
| G51214 | NA | other | upstream | 1586933 | 47064774 ~ 47236625 (-) |
| G51285 | LOC106561952 | other | upstream | 1811098 | 47288939 ~ 47289681 (-) |
| G51649 | LOC106573246 | other | upstream | 1899800 | 47377641 ~ 47378543 (-) |
