LOC110523892 (LOC106573278)


Basic Information

Item Value
gene id LOC110523892
gene name LOC106573278
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45632171 ~ 45680658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603012.2
GTTTTTATTGCCTGTTCCATCCCTGGCTCTGCAGGGAAAGATAGTGCAGGGTACCGTGGGAAGGCAGAACGGAGGTTCCTGTGAGTGTGCATTGGAAAATAATTGCACGCAGTCAAAGCCATTCATTCAAGACCTTGAGGAGCACAGCTCAGTAATTCAGCACCACAGTCTAGAGGACACCGTACAACACACAACGCAACGGAGGACAGCAAATTCCAGTGGATGGATTCAACCAGTGGTACAATTCTAAGACTTAAAATATATTCAAGATAGAATATAAAGTTTTGACATAGGCTTAACTACAGTGATATTTCAGAGGAAAACTTCGTTGGATAAAGAGTTTAGCCACTCTTCGCTTGCGTAATGCTGGTGTAGGCAACAGTGATATTTGGGATGACTGAATGCGCCAGGCGCCTGGAATCGGGGTCTAGATACTGTAGGCGTTAGGAGTGTTGTGGAGCTGCCGGAGAGCCCCTTCATTATTAAGAAGGATGCTGGTGGGAAAtgcctggagacagagaggacgaGATTTTTCGAAAGGCTCTGGAACTGCTGTCGGATCTCTGTTCTAGGGGCGAAGTGCAAAACGACAACTGTGTGGATTTTATATACTATTTTCGAGATCTTGCCAGACCAAGACACTCAGACTCAGATTTGTCAGTGAGCCTGCTGTCTCTGGTGGTGACCACCTGTGGCCTAGCCCTTTTCGGGGTCTCACTTTTCGTCTCGTGGAAGCTGTGCTGGGTGCCATGGCGCGACCGTGGCCTCCCCAGCGGCCTGAAGGATGGCCAGGGGGACCAGCAGCCAGTCATGATGGAGGTGGATGGGGTGGAGAATGAGTACAGTGAAGACTGTGTCAAGGAGCCTTCAGGCCTGGTAGTCCCCGAGGCAATCATGAAGATCAGCCACACATCCCCAGACATCCCCCTGGAGGCCCAGTCCAAGCTCAAGGAGAACCATGTCCGCCACATCACCCGCGTGCAGCGCCAGATCACTGAGCCCACCTCCTCTGTCCGGCACAACTCCATCCGCCGCCAAATGAACCTATCCAACCCAGACTTCAACATTGGCCAGTTCCAGAGACAGGAGTCCCTGGCCACTCTGGGCCGGATCAAACCCGAGCTCTATAAGCAACGCTCTGTGGACACGGACGACGGCAGGAAGACGGACAGCTGCGGCCGCATACATTTCATCCTCAAGTTCGACTGTGACCTGGAGCAGCTCATCATCAAGATCCACAAGGCCCAGGATTTACCGGCCAAGGATTTCTCAGGAACCTCTGACCCTTACGTCAAAATCTACCTGCTCCCCGACCGTAAGACCAAGCACCAGACCAAGGTGCACCGCAAGACCCTCAACCCTGTGTTCGACGAGGTCTTCCTGTTCCCTGTGGCCTACACTGAGCTGCCCACACGCAAACTGCACTTCAGCGTCTACGACTTTGACCGCTTCTCCCGCCACGACATCATTGGCCAGGTGCAGGTGGATAACTTCCTGGACCTAGCAGACTTCCCCAGAGAGACTAAACTCTGTAGGGACATCCAGTACGTCACCTCGGACAATGTGGACTTGGGGGATCTCATGTTCTCCCTGTGTTACCTACCAACGGCTGGAAGGCTAACCATCACAATGATCAAGGCTAGGAACCTCAAAGCCATGGACATCACTGGAGCCTCAGATCCCTATGTGAAGGTGTCTTTGATGTGTGAGGGACGGAGATTGAAGAAGAGGAAAACGTCCACCAAGCGAAACACTCTGAATCCAGTCTACAACGAAGCCATAGTATTTGATGTCCCTCCTGAGAACATTGATCAGATCAGTCTCCTAATAGCAGTGATGGACTACGATCGGGTAGGTCACAATGAGGTCATTGGAGTGTGTAGGGTGGGCAATGAGGCGGAGAGCCTGGGCCGAGACCACTGGAACGAGATGTTGTCATACCCTCGCAAGCCCATCGCCCACTGGCACCCCCTGgtagagTGGATGGGTCAGGGGACTGCAGGTGAAAGCCAGGGCGGTTCCACCAACTCTCTAAAGACTCCTCCCTCACCATAAAGAGAACACAGGGTGGTGAAGGAGAGGAACAGCAGAGACCCCAAGCatcaagagaggaggagagatcagtATGCTAGTAATGGTAGATGTTACACTTGGTTTCCCCGACATAGATTAAGTTTAGTGCTGaactaaaaagcatgctcaattTGAAAGTGCTTACTGATCCAGGACAggcttaaaacttcttcaggattggtgggtcccctgcgggacggttgcactaacgtaggctaatgtgattagcatgaggttgtaagtaacaagaacatttcccaggacatagacctatctgatattggc

Function

NR:

description
synaptotagmin-9-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19909 SYT9; synaptotagmin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603012.2 True 2358 mRNA 0.52 7 45632171 45680658

Neighbor

gene id symbol gene type direction distance location
LOC110523834 LOC106573224 coding downstream 45090 45476653 ~ 45587081 (-)
LOC118964648 NA coding downstream 154330 45476653 ~ 45477841 (-)
LOC110523755 NA coding downstream 217507 45325909 ~ 45414664 (-)
parvaa LOC106573218 coding downstream 310500 45304638 ~ 45321671 (-)
LOC110523724 LOC106573217 coding downstream 332300 45257236 ~ 45299871 (-)
LOC110523903 LOC106573225 coding upstream 49577 45730235 ~ 45867098 (-)
LOC110523913 LOC106573227 coding upstream 307288 45987946 ~ 46025205 (-)
LOC110523921 LOC106573228 coding upstream 345120 46025778 ~ 46076741 (-)
tcp11l1 tcp11l1 coding upstream 404924 46085582 ~ 46097107 (-)
LOC110524015 LOC106573241 coding upstream 1056777 46737435 ~ 46743033 (-)
G49619 NA non-coding downstream 152749 45476563 ~ 45479422 (-)
G49459 LOC108441480 non-coding downstream 180440 45435672 ~ 45451731 (-)
G49560 NA non-coding downstream 250033 45360643 ~ 45382138 (-)
G49556 NA non-coding downstream 272620 45339225 ~ 45359551 (-)
G49555 NA non-coding downstream 293021 45338855 ~ 45339150 (-)
G49759 NA non-coding upstream 18498 45699156 ~ 45699878 (-)
G49777 NA non-coding upstream 43501 45724159 ~ 45724388 (-)
G49817 NA non-coding upstream 111494 45792152 ~ 45793197 (-)
G49872 NA non-coding upstream 199133 45879791 ~ 45880234 (-)
G49907 NA non-coding upstream 200412 45881070 ~ 45939772 (-)
tspan9a LOC106573177 other downstream 2503142 42852829 ~ 43129052 (-)
G41868 NA other downstream 6610146 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7440435 38187488 ~ 38191736 (-)
G40732 NA other downstream 7506446 38125280 ~ 38125725 (-)
G40079 NA other downstream 7915138 37716540 ~ 37717033 (-)
G49774 NA other upstream 40147 45720805 ~ 45721124 (-)
G49962 NA other upstream 268300 45948958 ~ 45949951 (-)
G51214 NA other upstream 1384116 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1608281 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 1696983 47377641 ~ 47378543 (-)

Expression


Co-expression Network