Item | Value |
---|---|
gene id | LOC110523948 |
gene name | LOC106573232 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048565.1 |
NCBI id | CM023219.2 |
chromosome length | 95772356 |
location | 46249719 ~ 46267255 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
paired box protein Pax-6 isoform X2 |
id | description |
---|---|
K08031 | PAX6; paired box protein 6 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036978570.1 | False | 1868 | mRNA | 0.49 | 14 | 46249719 | 46266640 |
XM_021603124.2 | False | 2048 | mRNA | 0.48 | 14 | 46251072 | 46266640 |
XM_021603161.2 | False | 2024 | mRNA | 0.49 | 13 | 46251072 | 46266640 |
XM_021603208.2 | False | 2126 | mRNA | 0.48 | 15 | 46251072 | 46266640 |
XM_021603233.2 | False | 2102 | mRNA | 0.48 | 14 | 46251072 | 46266640 |
XM_036978574.1 | False | 2048 | mRNA | 0.48 | 14 | 46251072 | 46266640 |
XM_036978581.1 | False | 2039 | mRNA | 0.49 | 14 | 46251072 | 46266640 |
XM_036978601.1 | False | 2012 | mRNA | 0.49 | 13 | 46251072 | 46266640 |
XM_036978621.1 | False | 2132 | mRNA | 0.48 | 15 | 46251072 | 46266640 |
XM_021603179.2 | False | 2008 | mRNA | 0.49 | 13 | 46251073 | 46266640 |
XM_021603225.2 | False | 1981 | mRNA | 0.49 | 12 | 46251073 | 46266640 |
XM_021603241.2 | False | 1966 | mRNA | 0.49 | 12 | 46251073 | 46266640 |
XM_021603248.2 | False | 1960 | mRNA | 0.49 | 12 | 46251073 | 46266640 |
XM_036978587.1 | False | 2032 | mRNA | 0.49 | 14 | 46251073 | 46266640 |
XM_036978615.1 | False | 2002 | mRNA | 0.49 | 13 | 46251073 | 46266640 |
XM_036978632.1 | False | 1996 | mRNA | 0.49 | 13 | 46251073 | 46266640 |
XM_036978646.1 | False | 1990 | mRNA | 0.49 | 13 | 46251073 | 46266640 |
XM_036978562.1 | False | 2668 | mRNA | 0.46 | 14 | 46251073 | 46267255 |
XM_036978569.1 | False | 3605 | mRNA | 0.46 | 14 | 46251507 | 46266640 |
XM_021603170.2 | False | 3570 | mRNA | 0.46 | 13 | 46251512 | 46266640 |
XM_036978625.1 | False | 2160 | mRNA | 0.49 | 14 | 46255430 | 46266640 |
XM_021603152.2 | True | 1503 | mRNA | 0.51 | 12 | 46256691 | 46266640 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
wt-t1a | wt-t1a | coding | upstream | 90197 | 46142006 ~ 46159522 (+) |
LOC110523825 | LOC106573223 | coding | upstream | 778206 | 45466496 ~ 45471513 (+) |
LOC118964647 | NA | coding | upstream | 794892 | 45452036 ~ 45454827 (+) |
LOC110523812 | facr1 | coding | upstream | 803306 | 45427670 ~ 45446413 (+) |
LOC110523687 | LOC106573214 | coding | upstream | 1134371 | 45092982 ~ 45115348 (+) |
LOC118962389 | dcdc1 | coding | downstream | 202241 | 46469496 ~ 46477752 (+) |
LOC118964304 | dcdc5 | coding | downstream | 231755 | 46499010 ~ 46503478 (+) |
LOC110532345 | dcdc5 | coding | downstream | 236559 | 46503814 ~ 46505112 (+) |
LOC118964305 | NA | coding | downstream | 237993 | 46505248 ~ 46508046 (+) |
LOC118966744 | NA | coding | downstream | 245281 | 46512536 ~ 46512590 (+) |
G50098 | NA | non-coding | upstream | 126496 | 46123021 ~ 46123223 (+) |
G50092 | NA | non-coding | upstream | 136901 | 46112611 ~ 46112818 (+) |
G50089 | NA | non-coding | upstream | 140878 | 46108624 ~ 46108841 (+) |
G50057 | NA | non-coding | upstream | 157233 | 46051187 ~ 46092486 (+) |
G50036 | NA | non-coding | upstream | 221943 | 46025782 ~ 46027776 (+) |
G50180 | NA | non-coding | downstream | 5623 | 46272878 ~ 46273108 (+) |
G50182 | NA | non-coding | downstream | 8162 | 46275417 ~ 46275638 (+) |
G50192 | NA | non-coding | downstream | 24903 | 46292158 ~ 46292372 (+) |
G50194 | NA | non-coding | downstream | 27148 | 46294403 ~ 46294610 (+) |
G50200 | NA | non-coding | downstream | 38745 | 46306000 ~ 46306226 (+) |
G50010 | LOC106573227 | other | upstream | 256828 | 45992273 ~ 45992891 (+) |
G49335 | LOC106573225 | other | upstream | 512939 | 45730241 ~ 45736780 (+) |
G49142 | NA | other | upstream | 831539 | 45414706 ~ 45418180 (+) |
G48976 | NA | other | upstream | 1103079 | 45145278 ~ 45146640 (+) |
LOC110523657 | NA | other | upstream | 1177290 | 45071354 ~ 45072433 (+) |
LOC110524042 | NA | other | downstream | 590653 | 46854230 ~ 46861465 (+) |
LOC110520864 | NA | other | downstream | 959991 | 47227246 ~ 47260224 (+) |
G52080 | NA | other | downstream | 1739419 | 48006674 ~ 48024958 (+) |
G52324 | NA | other | downstream | 2113287 | 48380542 ~ 48383257 (+) |
G53181 | NA | other | downstream | 2626242 | 48893497 ~ 48893912 (+) |