LOC118964304 (dcdc5)


Basic Information

Item Value
gene id LOC118964304
gene name dcdc5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46499010 ~ 46503478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051349.1
AGATGGGCCATCAAACAGGAGGGGCTGAGAAGAGCGGGCCAATGGAAGCAGTCCAAGGTAGAGAACCCAGAGTGGAACAGGCTGACCTACATGTGGCCCTCTCTGCCCAGTGGAGAGCTCAACCAGTAGGAAGCCTCTCGCCCGCACAGCACAGAGACTCAAAGCAGAAAGAGGCACCAGCAGGGAGAGGGAAAACAGTAACACGGCAGAAATCCACAGCCTTGGGTTTCAGCAGTTCCTTGAGAGGTGCACAGTCTCTTCATCTGCCCCACGCTGCTCTCAGGCTCTTCCTCACAGACGGCAGGGAGAGAACACTACTCCTAGATCTGATTCTAGACCAGCTGGTGTATGTGTCCTGTGTGCAGCCGTGGGTTAACCCTCATCTCAGTCGTGGTAGAATGTCCAAACAGCGCCGCCTTCTCCACCTGGAGCCGGACATGTCCCAGATCCGCCACTACTGCACCCTCTGCCACCAGCATGATATGGTACTGGAGGTAAGAGGTGAGATACAGGAGGGCTCTCTGCTGGCCCCCTGTGGtgttttctatgaagagcagagccAAAGAGTCAACGCCCCAGGAGGATAGTGCTGAACATGATCACCTCAACAGTCTCATGTGAGTCTGTCAGTAACAAACTAACAAGGCCAATCAGGTCCACTCTCTGATCCTGCATACTAAAACTGCATAATATGTCATTGTGTCATTATGTCCCGTTATTGTCTTGTACATGTGTTCAGCTTCATGAAAAGAAGTCCCTCTTTCAATGTTATTTGCGTCTTGACATCGTGTGTGCTTTTCTGTTTCGGAAGGGACTCACACTCAAGAGCTCACCAGAAAATAGAGACGTACCCTACTTTCAAATACACGTGGCAAGGGAACCACGAGGGAGAAATGTTGTGGAAAATGGCTGCAGTGATGTTGACCAACCTGCTAAGAACAAGGCTAAGCTGctttaaaacaaacatacagccaTCGTTTCCGTGGGGTTGCACAGGGTACTCTGTTTCACTAGCACCAGTGCTCCATTGTTCTGGATTTTCATGGCATTGTGCGTCAATTctttctgctttctctctctctttctctgttttttcTCTCAATAGGTTGCAGCAGCGCAGTAGGAGCATCACACAGGCCCACAGACAGCAGTTCGAGTTCAGTAAGGGCCAGATAGTGAGCTGCAGAAACCCCTGTCTGGCTGTTTGGGTCGCTGGCCATGGGGCAGTGGGGGAAGGTGGGGTAAAAACAGTTGGTGCGCAGCAACCCCTCTTACTCAAACCAACGTTGGACGCtgaatgagggagagagGACTCTTCATCTGTTGGCCAACCCTGAGCTGGTATTGTCTGTTTCCATGACTACAATCCCCCCCAGGAGACTCCTGCTCTGAACCCCGTCTCCTCACAGGCTGCTCTGTAGTCCTACAGAAATATAAGCCCTATAGTTGTGGAGTAGCCAACCAGAAGTGGGGCTGGTTTCCAGATCTTACGGTTCTGAGTGCATTCTACACCTCATCGCTGGACCAGGAAGTGACTGCAGCCAATCAGGCCTCCGTGTGTGTACCGCCTGTGTGTCCCCAGAACCACTGCACCAGCAGGTATACCAGAACCAGTCCAGAACAACTACTGTAGCACACTGTACTTGACACAGTGTTGGGTATCCATACCCATTCTGTTCTGCTGTACATTCTTAGTGTATTCTGTGGTTCTATGCGCTGGTTGTGAGGATTATAGGAAGGTTCGAAAGGAGTGGTACATTTTGGATACCAACTGTACATTCTTCTTTGCTTAGATGGTTATTTGGGAATAATGTTGTCTGTACAGTATTGCATACTCTCTGAATAATTCTGTATGCACTATACCAGAGGAGGCTAGTTATAGGAGGGACTcagtgtaatggctggaatataATTATGGAATGGAGTCAGATacgttgtttccatgtgtttggtaccattccatt

Function

symbol description
dcdc5 Predicted to enable microtubule binding activity. Predicted to be involved in regulation of mitotic cytokinesis. Predicted to be located in Flemming body and mitotic spindle. Orthologous to human DCDC1 (doublecortin domain containing 1).

NR:

description
PREDICTED: doublecortin domain-containing protein 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051349.1 True 1964 mRNA 0.49 7 46499010 46503478

Neighbor

gene id symbol gene type direction distance location
LOC118962389 dcdc1 coding upstream 21258 46469496 ~ 46477752 (+)
LOC110523948 LOC106573232 coding upstream 231755 46249719 ~ 46267255 (+)
wt-t1a wt-t1a coding upstream 339488 46142006 ~ 46159522 (+)
LOC110523825 LOC106573223 coding upstream 1027497 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 1044183 45452036 ~ 45454827 (+)
LOC110532345 dcdc5 coding downstream 336 46503814 ~ 46505112 (+)
LOC118964305 NA coding downstream 1770 46505248 ~ 46508046 (+)
LOC118966744 NA coding downstream 9058 46512536 ~ 46512590 (+)
LOC110524001 mppd2 coding downstream 21880 46525358 ~ 46575941 (+)
LOC110524008 LOC106573239 coding downstream 128957 46632435 ~ 46736863 (+)
G50497 NA non-coding upstream 33460 46465282 ~ 46465550 (+)
G50496 NA non-coding upstream 34533 46464237 ~ 46464477 (+)
G50495 NA non-coding upstream 34823 46463977 ~ 46464187 (+)
G50490 NA non-coding upstream 38194 46460606 ~ 46460816 (+)
G50483 NA non-coding upstream 46027 46452689 ~ 46452983 (+)
G50601 NA non-coding downstream 152207 46655685 ~ 46668051 (+)
G50633 NA non-coding downstream 255335 46758813 ~ 46759118 (+)
G50642 NA non-coding downstream 269262 46772740 ~ 46773045 (+)
G50645 NA non-coding downstream 274689 46778167 ~ 46778399 (+)
G50661 NA non-coding downstream 303868 46807346 ~ 46809439 (+)
G50010 LOC106573227 other upstream 506119 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 762230 45730241 ~ 45736780 (+)
G49142 NA other upstream 1080830 45414706 ~ 45418180 (+)
G48976 NA other upstream 1352370 45145278 ~ 45146640 (+)
LOC110523657 NA other upstream 1426581 45071354 ~ 45072433 (+)
LOC110524042 NA other downstream 354430 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 723768 47227246 ~ 47260224 (+)
G52080 NA other downstream 1503196 48006674 ~ 48024958 (+)
G52324 NA other downstream 1877064 48380542 ~ 48383257 (+)
G53181 NA other downstream 2390019 48893497 ~ 48893912 (+)

Expression


Co-expression Network