LOC118964305


Basic Information

Item Value
gene id LOC118964305
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46505248 ~ 46508046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051353.1
GTTCAGAGACAGTGTTCCAGGTGAGTGCTGAGGACATGAGCTCTGTAGATGACGGTCTGCTGACGCTAATACTGAGGTCCCCCATCCATGTCTGGGTGTCCTGTGGAGAGCCCTACCTCCCTTAAAATGCCCCCCGCTTCTCCAGACCGGGCCAAGCCTCCCTAGTACCCACCCAGAGTCCTGCCAACACTGAGACTCGACTTGCTGAGATGGAGGCCCTCCTAGAGAAAGGCCTCTTCCACAGAAGACCTCCCAGGAACTGTACCATCAGCCTGATGTCAAAATAATTCAGGTGTACCACAGTGGAGACAGGCATGTATCTGTCCATGTCTAGGGGCAAAGCATCGAATAGGTACTTCCTCCAAATAGAGAGTCGGATATATCATACTCCAGTCTAGATTGTCTATGGGGCGCCGTTTGTAGCATGCTATATTTTGTGACAAAGAGAGCGGAGgcgccaggtagcctagcagttaagaacGTTGGGCCAATAACTGGTTTAAATCCCTGGGCTGACTATGGGAAAAACCTGTCAATGTACCCTTGAGCAAAAGCACTTAACCctgattgctcctgtaagtctctctggataagcgCGTCTGCTTAAATGACTCATGTGAATTTCATGCCGCAGAATTCATATTTTTCACAAAACATAGCTAGCACGTGACAAACAGCGCCCCCCTATATCTCCTCGGTGACTGTGTTGCTACATGTCGCAGCTGCTGAGCTGCAGTACTGTGAGGCTGGCCCTGTCCAGGTCCGCCCCCAGGCTATACGCTGCAGACGGCAGGCGTCTGAGCTCCTGGGTGGACATCCACAGGGACATGCTGCTGTGTGTGTCAACAGGACAGCCCTTCATCAGCCCTGAAGATTGTGGGGACAAGATTGAGATGAGAGCTACCTTCGCTTGAATGATGAGATCTCTAGACTCTGGTAATACCACAACAGACAGGGGACCAAAGGAGCACCTGACTACCACAATTCCACGTGGCTGCCATTCTCTCCATTGGGCTGCAGAAGCATAGAACTGTTACAAAACAACTGTACCATGCCTGATCAAGATTGGTGTTATCCACTGTTGTTGGACTGTCGCTACGTTCAAGCAATTCCCAATGGGACAGTAGCTACCAGGAACCGTGTGATGTTATATATTCACCACGAGTGGGAAGCAGTGGTATAAGCGAGTcagaaactcagcaaaaaaaaagaaacgtccctgtcaggaccctgtctttcaaagataaattcgtaaaaatcaaaacAACTTCaacatatcttcattgtaaagggtttaaac

Function

NR:

description
uncharacterized protein LOC110532345

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051353.1 True 1300 mRNA 0.49 5 46505248 46508046

Neighbor

gene id symbol gene type direction distance location
LOC110532345 dcdc5 coding upstream 136 46503814 ~ 46505112 (+)
LOC118964304 dcdc5 coding upstream 1770 46499010 ~ 46503478 (+)
LOC118962389 dcdc1 coding upstream 27496 46469496 ~ 46477752 (+)
LOC110523948 LOC106573232 coding upstream 237993 46249719 ~ 46267255 (+)
wt-t1a wt-t1a coding upstream 345726 46142006 ~ 46159522 (+)
LOC118966744 NA coding downstream 4490 46512536 ~ 46512590 (+)
LOC110524001 mppd2 coding downstream 17312 46525358 ~ 46575941 (+)
LOC110524008 LOC106573239 coding downstream 124389 46632435 ~ 46736863 (+)
LOC110524021 LOC106573242 coding downstream 290440 46798486 ~ 46810016 (+)
LOC110524042 NA coding downstream 346184 46854230 ~ 46861465 (+)
G50497 NA non-coding upstream 39698 46465282 ~ 46465550 (+)
G50496 NA non-coding upstream 40771 46464237 ~ 46464477 (+)
G50495 NA non-coding upstream 41061 46463977 ~ 46464187 (+)
G50490 NA non-coding upstream 44432 46460606 ~ 46460816 (+)
G50483 NA non-coding upstream 52265 46452689 ~ 46452983 (+)
G50601 NA non-coding downstream 147639 46655685 ~ 46668051 (+)
G50633 NA non-coding downstream 250767 46758813 ~ 46759118 (+)
G50642 NA non-coding downstream 264694 46772740 ~ 46773045 (+)
G50645 NA non-coding downstream 270121 46778167 ~ 46778399 (+)
G50661 NA non-coding downstream 299300 46807346 ~ 46809439 (+)
G50010 LOC106573227 other upstream 512357 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 768468 45730241 ~ 45736780 (+)
G49142 NA other upstream 1087068 45414706 ~ 45418180 (+)
G48976 NA other upstream 1358608 45145278 ~ 45146640 (+)
LOC110523657 NA other upstream 1432819 45071354 ~ 45072433 (+)
LOC110520864 NA other downstream 719200 47227246 ~ 47260224 (+)
G52080 NA other downstream 1498628 48006674 ~ 48024958 (+)
G52324 NA other downstream 1872496 48380542 ~ 48383257 (+)
G53181 NA other downstream 2385451 48893497 ~ 48893912 (+)

Expression


Co-expression Network