LOC110524015 (LOC106573241)


Basic Information

Item Value
gene id LOC110524015
gene name LOC106573241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46737435 ~ 46743033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603297.2
TCCGAAAGGGCTTTCGTAAAGGTCCACTATAAAACCCTTCTTCTAAAGGGAAGGGCCAGAAGAGAACTGTGAGTCTTTCCACTTGGATCCTATAGGCGAGGGGAAACTCATTCAGTGAGAAAGGGCTCTTTACAATTACTTTTCCGTTACCCATCCAAACAGAGCAATGATGTTCCCTAATGCACTTGCGCCTCCCGCTATATGCCCAAGTCTTCTTCGACCGCCGGcggctctctctctgccccagtcCTTGCATTCAGCTTTCCCCGCCCACTCGAGCTTTTTGGTGGAGGACCTGTTGCGGATCAGTCGTCCGGTGAGCTACTTCCACCGGACGATTCCCTCACCCAGCGTGTCTCCCCTGGCATCAGGAGCCACCACGCTGACCTGCAGTCATCACACTCACCAAGCTGTCATCTCCACTTTAGCACAGGCAAGGACTGGTTCTCCTCAGACCGCACTCTCCATTAACCACGACCCTAACTATCTGAAGTTTGGAGTTAATGCCATCCTAGCACCATCAACGAGAAACGCATCGTCTCCACGTTTAATGCATCATGCTATGCACGCAAAAGCCTTCCCTCTGCCATATTTTGACTGTTCGTTTCATCCCTTCATCAGAGCATCATATTTTCCAGCATCCTCTTCAGTGGTTCCTATCCCCGGTACATTTTCATGGCCGCTGGCTGCAAGAGGAAAGCCCAGGAGGGGGATGCTACGACGGGCAGTGTTCTCTGATGTCCAGCGCAAAGCACTGGAGAAAATGTTTCAGAAACAGAAATACATCAGCAAACCAGACAGAAAGAAGTTGGCTGCAAAACTAGGGCTTAAAGACTCACAgGTGAAAATCTGGTTCCAAAACCGAAGAATGAAATGGCGCAATTGCAAAGAGAGGGAGTTGTTGTCCTCCGGAGGTTGCCGGGAGCAAACCCTTCCGACTAAGATGAACCCCCACCCGGACCTCAGTGACGTCGGGAAGAAGTCTTGCGAGGAGGAGGTAGACGCGTACAGCCCGCGCGCGGCCTTTTGCCGCTCACCATCAGAGCGCGAACTTTTGAACAGTGTGGAGTCGCACCTCTCTTCGCCTTGCCACTCCAGCAAGCACTCCGACTTCTCAGAATCAGAGGAGGAAGAGATTACAGTGTCTTAATTATGAATAATACACACGTTATGTTTGTATAAAGTTGTTGGGTCACATATATTGTTGCGTATATtgtatataaatacattattaccCAAATTAGATCCAAGCATCCTTTGATTTTAGTATATTATTTGTCCGTGATATTACCAATTCACCTAGCCCTATACATACATGTAGGGGCCATATTGGTTGTGGTAGATATTTCAGTGCTTATTAAGGGATTCACTTAGTAAATTAGATGTATTCTTGCAGCTTTTGCTATTTGTACCATATTTTGTAAGGGCCATTTTTATACCAAGAGGATTATACCTGATTTAAATGCTTATATTAGATGCATTGCTTTTAATCTATGTAGATGTTACATCTATaacttaaaaataaatatattatttgTATGCTTTGTTTAAATGTTGTACTTTGAGAGTATTTTTTCAAATAAAACTAAAATGTAAAGAA

Function

NR:

description
homeobox protein DBX1-B-like

GO: NA

KEGG:

id description
K24875 DBX; homeobox protein DBX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603297.2 True 1600 mRNA 0.45 4 46737435 46743033

Neighbor

gene id symbol gene type direction distance location
tcp11l1 tcp11l1 coding downstream 640328 46085582 ~ 46097107 (-)
LOC110523921 LOC106573228 coding downstream 660694 46025778 ~ 46076741 (-)
LOC110523913 LOC106573227 coding downstream 712230 45987946 ~ 46025205 (-)
LOC110523903 LOC106573225 coding downstream 870337 45730235 ~ 45867098 (-)
LOC110523892 LOC106573278 coding downstream 1056777 45632171 ~ 45680658 (-)
LOC110524028 LOC106561496 coding upstream 74023 46817056 ~ 46839553 (-)
LOC118964698 NA coding upstream 158288 46901321 ~ 46902393 (-)
LOC118964697 NA coding upstream 203015 46946048 ~ 46947526 (-)
LOC118964694 NA coding upstream 229736 46972769 ~ 46974689 (-)
LOC118964693 NA coding upstream 294386 47037419 ~ 47038580 (-)
G50926 NA non-coding downstream 123014 46520583 ~ 46614421 (-)
G50886 NA non-coding downstream 289738 46447460 ~ 46447697 (-)
G50883 NA non-coding downstream 293466 46443671 ~ 46443969 (-)
G50875 NA non-coding downstream 302940 46434228 ~ 46434495 (-)
G50831 NA non-coding downstream 373983 46363243 ~ 46363452 (-)
G51091 NA non-coding upstream 20829 46763862 ~ 46764073 (-)
G51078 NA non-coding upstream 38733 46781766 ~ 46813577 (-)
G51038 NA non-coding upstream 55528 46798561 ~ 46805053 (-)
G51122 NA non-coding upstream 70921 46813954 ~ 46814375 (-)
G51123 NA non-coding upstream 71561 46814594 ~ 46814825 (-)
G49962 NA other downstream 787484 45948958 ~ 45949951 (-)
G49774 NA other downstream 1016311 45720805 ~ 45721124 (-)
tspan9a LOC106573177 other downstream 3608406 42852829 ~ 43129052 (-)
G41868 NA other downstream 7715410 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 8545699 38187488 ~ 38191736 (-)
G51214 NA other upstream 321741 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 545906 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 634608 47377641 ~ 47378543 (-)
LOC110524104 LOC106573248 other upstream 799343 47541224 ~ 47561223 (-)
LOC110524264 LOC106573263 other upstream 1551075 48291626 ~ 48304829 (-)

Expression


Co-expression Network