LOC110524064


Basic Information

Item Value
gene id LOC110524064
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47243857 ~ 47246448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473536.2
GAAATGGGAAATGACCTGGCAAGCCTGTCTCTGCCTGAGCATGATCACAACAAAAGTAGCTGTGCAGCACGTTTTTGTAAGGATGAGGAGGATGGTTGCAGACGTTCACATTCATGCAAGAAGGCACTGCAGAGTCTAAGAAGACGCATGGAAACTAAAAGAAACATAATTCAACTTGTAGGCTagatttgaaaaggaaataataaaTCCCGAAGCTCAGATGTCAGACACTGAGGCTGCCAGTACCTCTGGGTCGATAGTCCATGTGTTGGATGATGCACTGCCGTTGATCAGAACAGACCGTGTATATTACAGTTGACCAAAGCTATACTTGGATACAAGACTGATGACTCAATAACCAGTATTGACAACAGTGAAGATGGTTATGTCCCAGGGCCATCAGGATCATCAGTGGAAGGCAATTTCTATGAAGAAAATCTGACCGGAGAGATGTCAGCGATTCGGGCCAAACAGCCAATAACCAAGGGAAAGGTGGGACAAAAGAGGCTCACACGTTAAGCATGTTTCCTGCTTCCTTCAGTCAGTGCATTTTCACTTtgtagtcaaatcaaatgttattggtcacatacacatggttagcagatgtttatgCGAGTgtggcaaaatgcttgtgcttctagttccgaccgtgcagtaatatctaacaagtaatctaacaa
>XR_002473535.2
TGGAGGGAAGGCAAACCCGCGCTCTGTTAGCTAAATTTCCATGTCATCGGGTGTAGTTCGTAAAGGTTGAAGTgtgtatgttaggatggtaacgttattataattaaggatgaagtgtgaattcatgccaggaataataaggGCACTGCAGAGTCTAAGAAGACGCATGGAAACTAAAAGAAACATAATTCAACTTGTAGGCTagatttgaaaaggaaataataaaTCCCGAAGCTCAGATGTCAGACACTGAGGCTGCCAGTACCTCTGGGTCGATAGTCCATGTGTTGGATGATGCACTGCCGTTGATCAGAACAGACCGTGTATATTACAGTTGACCAAAGCTATACTTGGATACAAGACTGATGACTCAATAACCAGTATTGACAACAGTGAAGATGGTTATGTCCCAGGGCCATCAGGATCATCAGTGGAAGGCAATTTCTATGAAGAAAATCTGACCGGAGAGATGTCAGCGATTCGGGCCAAACAGCCAATAACCAAGGGAAAGGTGGGACAAAAGAGGCTCACACGTTAAGCATGTTTCCTGCTTCCTTCAGTCAGTGCATTTTCACTTtgtagtcaaatcaaatgttattggtcacatacacatggttagcagatgtttatgCGAGTgtggcaaaatgcttgtgcttctagttccgaccgtgcagtaatatctaacaagtaatctaacaa

Function

NR:

description
LOW QUALITY PROTEIN: transcription and mRNA export factor ENY2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473536.2 False 680 mRNA 0.43 5 47243857 47246448
XR_002473535.2 True 699 mRNA 0.42 5 47244739 47246448

Neighbor

gene id symbol gene type direction distance location
LOC110524042 NA coding upstream 382392 46854230 ~ 46861465 (+)
LOC110524021 LOC106573242 coding upstream 433841 46798486 ~ 46810016 (+)
LOC110524008 LOC106573239 coding upstream 506994 46632435 ~ 46736863 (+)
LOC110524001 mppd2 coding upstream 667916 46525358 ~ 46575941 (+)
LOC118966744 NA coding upstream 731267 46512536 ~ 46512590 (+)
LOC110520864 NA coding downstream 10145 47227246 ~ 47260224 (+)
lamb4 lamb4 coding downstream 69850 47316298 ~ 47339999 (+)
LOC110524092 LOC106573246 coding downstream 93718 47340166 ~ 47381610 (+)
LOC110524097 LOC106573247 coding downstream 137165 47383613 ~ 47401144 (+)
LOC110524112 LOC106573249 coding downstream 184204 47430652 ~ 47579162 (+)
G50759 NA non-coding upstream 4850 47214720 ~ 47239007 (+)
G50765 NA non-coding upstream 21988 47160234 ~ 47221869 (+)
G50674 LOC106573279 non-coding upstream 54973 46933489 ~ 47188884 (+)
G50695 LOC106573279 non-coding upstream 118860 47019866 ~ 47124997 (+)
G50746 NA non-coding upstream 139509 47054346 ~ 47104348 (+)
G50682 NA non-coding downstream 420 47246868 ~ 47247246 (+)
G51442 NA non-coding downstream 341575 47588023 ~ 47629944 (+)
G51503 NA non-coding downstream 442206 47688654 ~ 47691037 (+)
G50010 LOC106573227 other upstream 1250966 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 1507077 45730241 ~ 45736780 (+)
G49142 NA other upstream 1825677 45414706 ~ 45418180 (+)
G48976 NA other upstream 2097217 45145278 ~ 45146640 (+)
G52080 NA other downstream 760226 48006674 ~ 48024958 (+)
G52324 NA other downstream 1134094 48380542 ~ 48383257 (+)
G53181 NA other downstream 1647049 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 2791126 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 4203374 51449353 ~ 51451460 (+)

Expression


Co-expression Network