LOC110520864


Basic Information

Item Value
gene id LOC110520864
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47227246 ~ 47260224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473034.2
ggagtatatgcaaattgccatcatacaaactgaggcagcagactttgtgaaaatacatttttgtgtcattctcaaaacttttggtcaCGACTGTATAGTTACAGGAACCTCAATGTGGCCATGGATCTGTTACTTATTTTAAGGTttaataaatactgttacattagtttgtaagattacaaaagtaatatttaATTGTGTTTAGTTGACAACGCAACCAAGAGTTGGAGACCTGAAGCCAACATATAATTTATGAACTTGTTTTGCCGACAAATTAACaggctatttattgtatttcaaaagtgatattgaaATTTGTTTGGTCGACAACATCAAATATTGTGGGTTTAGCGTTGACTCAAAACGAATGCACAACAAGAAAAcacacaactactactattatagTATAGAAGTCAAAATACCTGTAGCTATGTTCCTACTTGGACATAATCAAAAACATTGACAGTGTTTCTCGTGCTAAGAGGATGCTATAATAAATAGATCATTGCGATTTTCAGATTTATTTCAGTACTGGGAATTTATTTGCCGTGCATATATGCTGATGAATTGAATATGAAACTAAAATCGTGAATGTTTTTCAAAGGTGTCTGTGTGGCGTCAGCTGCGAACGTTCCACACAGGTGTTCAATGATGTAACGCtcaatgagtgaatgggtgtggagtcagtcgcagagagcaaaggatgtgggaaaaaacacgctttaatgtccaaaatCAAAAAGAACAAAATAGTTATACCCTACACAGGCGTAACTATTACTACAATAAGTACCCTTAAGTAAAAATACCAGGACAGCGAGAAAACCCAACAAAACACtaacacctctcacaaatacagaataacaagcccgcacaaacagaagcgggctaaacgaacttaaataacaccaccctaacaaccaaacaatgaacaggtgaaaacaattagacaaaaccaaacaaacacggaacaaaggatcggtggcagctagtagaccggcgacgacgaccgccacccgaacaagaaggggagccgccttcggtaatattcgtgacatATGAGCGATCGAGTTCTACTACTCACTAGGCCTAATCTCATTTTAATAAATTCAAAACCACTAATGTAATGAAAATAAAAGCCAATAAACTGAATAATTATTGTCAAACTATTATGTCTATTCAATTGCTGAATTAGGCCTATTGTATTTAATTTTACATTTCATGCCTATTCAAGTGGTTTTGACAAACTTTTATGATTTGGACGGCTACTATGCCATAATgtacatgatgtcataatgaagcATTCTTTTGTTAAAATAAGACATTTCATAGACAGGTCATTGACGCTCGTCCTGAACTAAGGTAGGACCTATAATTTAATGAAATAATCTCAAATACACTACTTTTATCTTATGAGAACTTTATTTGATCAATAACTAAGGAAAACTATTATGTTTTGTGATTtgtgacaaaaaaatatttttttaaactaggtATTGCGGTCTTGAGTTCCTGTTTTCATGAATAACATTGTTGAAACTGTATAGTCAAGTCCTACGTGTGCAAATGATCTGGAAGTCcaaattgaagCCATGAAAGACAGAGGGAAGTCCAGGACTAGGACACAAGAGACCAGTCAGAACAGTTCTGAGAACTGCCTGACAGACATCCTCAGTGTCCGGTGTGCCAGTGATATTGTCCTACAGCCAATGCCACCAGGGAGAAAGAATAGCCGATCCCACTTCCACAACATGGATGTGACTAAAGAGAGGGCTGACATGGGAAGGCTTCCAATGGCCACTCCACCCATCAGGCTCCCAATGCTCACTGTGACCTCTCTCACTGTCCAACGGAACAAAAACACCCTCAAGGTACCTCTCATGCCTCTCTGCAGCTggagggacagatgggtagcaagCGTCTGGGTCCGGTCAAAACCAAAACCAGAGTTTTTTTTTACCCCCAGCCACAAGCAGGAGCCGAGCCAGAGGTTAAATCCagcagaccacagacaccaggaaGGCCCAATGTATGCTCCACTGCAGCCAAGGAAGTAGCTCCTTTATCTGAGACTCCATGCAGCCAGTCTGAGGTCAGGATCCAGGCCATTACGTTATTATAAACTAGTGTTTTTCCACTTTCAAAGGACATTCTAATTCCTgccaaaatgttcataaattgATAAAAATGGAAGATTCACAgactaaggcctaccttcaatttgGACTTCCAGATCATTTGCACACACAGGATTTGACTACAGTTTCAACAATATATTATTGAAAACAAAAACACAAGAccttgttttaaaaaaatactttttttgtcaCAAATCACAAAGCATAACAGTTTTTCTGACATTTATTGATCATATAAAGTTCTCATAAAATAAAATTCATGTATTTGAGATTATTTAATTAAATTATAGGTCCTACCTCAGTTCAGGAAGAGCGTCAATGACCTGTCTATGAAATGTCGTATTTTAACAAAAGAATgcttcattatgacatcatgtacATTATGACAAGTAGCCGTCCACATCATAAAAGTTTGTCAAAACCACTTGAATAGGCATGACATGTCAAACTAAATACAATAGGGTAATTCAACAATTGAATGAAAATAATAGTTTGACAGTAATTATTCAGTTTTTTggcttttattttcaatacagtTGTAAGGTCCTTGGTGTCATGAGGGTGAAATCAGGCGCAGGAAAGCTCAAGTTCAATAAAGTGCTTTTTTTAATGCACATACGGTGAACTACGGTCACCCCACTTAAACCAAATGCCCCAGACACAGGTAAACGAAAACAGTCTAGCACTAAATACACAAACATGTACATCTAATGCaaacaccagggttacaataatcaatccggcacaaagaaccaggcgggccggctgactaataaagcctcaaTAATTATAACCAACTCAAAACAGAtgtactcaataaacacataaggagggggagaaaagaatcagtggcagctagtaggccggcgacaacgaccgccgagcgccacccgaacgagaaggggagccaccttcggtcggagtcgtgacaacAGTAGTGGTTTTGAATTTATTAAAATGAGTAGGAACATATGTGTGGAACGTTCGCAGCTGACACCACACAGACGCCttaggaaaaaaaatcctgaTTTTAGTTTCATAATCAATTTATCagcatatttttatttatttaaaaaacaattttttttaataatttttattttcatttcacaTTCAATTACAAATGTAGTGCATAACGTTTTACATAACATGGAAACTCACAAACAGTATCAAAAAGTACCATAACAATATAAGAATATCAAAACTCCTAAAAAAAAGTGCTGTTCTGCAGAACCTGACCAGTATTATTGGCCTATATTCAAGATTAACATGCCTCTAACAATCTCcaaaaa
>TU56739
GGAGACCCAATTTATGCTCCACTGCAGCCAAGGCAGTAGCTCCTTTATCTGGGACTCCATGCAGCCAGTCTGAGCCATGAAAGACAGAGGGAAGTCCAGGACTAGGACACAAGAGACCAGTCAGAACAGTTCTGAGAACTGCCTGACAGACATCCTCAGTGTCCGGTGTGCCAGTGATATTGTCCTACAGCCAATGCCACCAGGGAGAAAGAATAGCCGATCCCACTTCCACAACATGGATGTGACTAAAGAGAGGGCTGACATGGGAAGGCTTCCAATGGCCACTCCACCCATCAGGCTCCCAATGCTCACTGTGACCTCTCTCACTGTCCAACGGAACAAAAACACCCTCAAGCCACAAGCAGGAGCCGAGCCAGAGGTTAAATCCagcagaccacagacaccaggaaGGCCCAATGTATGCTCCACTGCAGCCAAGGAAGTAGCTCCTTTATCTGAGACTCCATGCAGCCAGTCTGAGGTCAGGATCCAG

Function

NR:

description
uncharacterized protein LOC110532353

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473034.2 False 3430 mRNA 0.38 2 47256593 47260224
TU56739 True 493 TUCP 0.53 3 47227246 47258898

Neighbor

gene id symbol gene type direction distance location
LOC110524064 NA coding upstream 10145 47243857 ~ 47246448 (+)
LOC110524042 NA coding upstream 395128 46854230 ~ 46861465 (+)
LOC110524021 LOC106573242 coding upstream 446577 46798486 ~ 46810016 (+)
LOC110524008 LOC106573239 coding upstream 519730 46632435 ~ 46736863 (+)
LOC110524001 mppd2 coding upstream 680652 46525358 ~ 46575941 (+)
lamb4 lamb4 coding downstream 56074 47316298 ~ 47339999 (+)
LOC110524092 LOC106573246 coding downstream 79942 47340166 ~ 47381610 (+)
LOC110524097 LOC106573247 coding downstream 123389 47383613 ~ 47401144 (+)
LOC110524112 LOC106573249 coding downstream 170428 47430652 ~ 47579162 (+)
LOC110524160 LOC106573252 coding downstream 473332 47733556 ~ 47769809 (+)
G50682 NA non-coding upstream 9347 47246868 ~ 47247246 (+)
G50759 NA non-coding upstream 17586 47214720 ~ 47239007 (+)
G50765 NA non-coding upstream 34724 47160234 ~ 47221869 (+)
G50695 LOC106573279 non-coding upstream 131596 47019866 ~ 47124997 (+)
G51442 NA non-coding downstream 327799 47588023 ~ 47629944 (+)
G51503 NA non-coding downstream 428430 47688654 ~ 47691037 (+)
G51520 NA non-coding downstream 459687 47719911 ~ 47775018 (+)
G50010 LOC106573227 other upstream 1263702 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 1519813 45730241 ~ 45736780 (+)
G49142 NA other upstream 1838413 45414706 ~ 45418180 (+)
G48976 NA other upstream 2109953 45145278 ~ 45146640 (+)
G52080 NA other downstream 746450 48006674 ~ 48024958 (+)
G52324 NA other downstream 1120318 48380542 ~ 48383257 (+)
G53181 NA other downstream 1633273 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 2777350 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 4189598 51449353 ~ 51451460 (+)
LOC118966744 NA coding upstream 714656 46512536 ~ 46512590 (+)
G50674 LOC106573279 non-coding upstream 38362 46933489 ~ 47188884 (+)
G50746 NA non-coding upstream 122898 47054346 ~ 47104348 (+)
G50741 NA non-coding upstream 166526 47032049 ~ 47060720 (+)

Expression


Co-expression Network