LOC110524112 (LOC106573249)


Basic Information

Item Value
gene id LOC110524112
gene name LOC106573249
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47430652 ~ 47579162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603465.2
ATAGCAGCTTACTTGGGGGAGGCAACAGAGGAGACGGAAAGAAAATGCCATGCACAAAACTAAATTGACTCTCGCTAGGACCTGGAGGGGTGCTGGTGGGTGTTCCAGAAGTGACAGAAAGGAGAACGAGCACGGAAGTCAAATATCTGGTGATGGCTCAGCAGGCCGGGGCTGGGCGCAGGTATATCAGGGCGTTTGTGAGCGGCTTCTTCGTGGCAGTGCCCGTAACTGTCACTGTTCTGGACCGCTTTGCCTATGTAGCACGAGTAGAAGGAGCCTCAATGCAGCCTTCCCTGAATCCTGAGGGGAATGTGACAGGTTCTGACGTGGTGCTCCTGAACCGCTGGAGTGTGAGGAACTACCAAGTACGTCGAGGAGACATTGTATCAGTCCTGTCTCCCAAGAACCCGCAGCAGAAGATCATCAAGCGGGTCATAGCCCTTGAGGGAGACTTCATCAAGACGCTTGGCTATAAGAACCGCTATCTCAGGGTCCCGGATGGCCACTTTTGGATCGAGGGGGACCATCACGGCCACAGTCTGGACAGCAACAGCTTTGGACCGGTGTCTCTGGGGTTGGTCCACGGCCGTGCCTCCCACATCATCTGGCCGCCCAATCGGTGGCAGAGGATCGAGCCGTCCCTCCCCCCTGAGCGGAAGCCCTTGTTGAACTGGCACGGGGACACAACAGAGGAGGAGGACTGAGGAGAGGCCTGCTCATGGCTGTATACATACTGTACCTACTACCTGCactctctgtcatacagtacatgtgAAAATGTCATAATCCTTTGATGTGGCACAGTTATGATATCTCTTTGTTGTTGAGAAGCTGAGTGTGTCAATGGATCAGATACCCATTACCCATACAGTTGCGGCCACATTTATAGGCACCCTtgcacttttcttaaataattGCCTATTTCTTCTACAATAAGTTGAAAAATAAAGTttggtctccacaccttgttTTTGGGATATTCAACATTGCAGAACctattttgtttttgtaaatataagtttaacatttttatttaaaaaataaagaccAATGGCATGGATGCAATTATTGGCACCCCGGAGCTAGTACTTAGTTGCACAGCCTTTGTCAAAGATAACTGCCAAGAAATGCTTATTGTAGCACACTTCTACTGTTTTCACCTCTCGCCATAGGTTAtgattcagatctggactctTTACTGGCCACTCCAGAACAGATTTCTTCTTGAACCTTTCCATGGTGATTTCTATGTATGTTTGGGGGTTGTTGTCCTACTGTGGAAGCCAGTTTTTGGACACTGGATTGAACATTGCACTCCAAAACACCCTTGATAATCTGCTGATTTCATGGCTTGCACACATTCAAGGCGCCCAGTACCAGAGGCAGCAAAGCAATCCCACATCATTATTGAACCTCCTCCATAATTGGTTTTAGTCTTGGTAAACATAGGAAGACCCCACTGCTGAAGGAGACAAGTAAGCCTGATTGAACTTCTCAAAACCCCACCTAAACAAGGCTAAATCCTGGGGGGGGGGATGCTCTGTGGGCCAATGAAACAAAATTAGAGCTCTTTGGCAATACAGATCAGCGTTCTGTTTACTGGCCAAATTAAGCGTTCAATGAAAAAAAGAACCCTCCCTACAATGAAAGATAAGGGAGGTTTAATCATGCTGTGGTGTTGCTTTGCTGCCTCTGGTACTGGGGACCTTGAATGTGCACAATCCCAGTGTCCAAAAACTGGGTCTCCATTGAAGGTTGTGTCTTCCAGCGggacaacgaccccaaacacacatcAAAAAGCACCCAGGAATGGTTAAGAAGAGATGTTGGACTGTTCTGGAGTGGCCAGCGAAAAGTACAGCTCTGAATTACATCCAAAACCTACGGCGAGGTCCAATATGGCGAACGGTTGGTAAAGGGCACCCATCAAATGTTGAATAATTACAGCAGTTTGCTTCTGAAAAGTGGGCCAAATTGCTAGTAGAAAGGTACAGAAAGCTCATTGATGGTTACAAGAAGCATAAACTTATGttgacaaaatatattttttgaatgTCATCTTATTTTAGAAGAAATAGggaattatttaagaaaagtATGAAACTGTATGTCTGTGGCcaattgtaaaaaatatttttaaaacattttgcaaaCATGTAATGTGAACAACTGAACGCTGAGATATATATTTGTATGTTGTGTTATCAGAATTTCAGACTAGTGCAGTACCATGTTATTACATGTATGGAAATATTAAACTAAAACGGGTTGGGCTTTGAAGGAGCCTGTGGCATGAAAGGCT
>XM_036979007.1
GGAGGGGTGCTGGTGGGTGTTCCAGAAGTGACAGAAAGGAGAACGAGCACGGAAGTCAAATATCTGcatgagtggggagctaacatgacgcagcccagactcccagtgcaggcttgCAATGGGTGATGGCTCAGCAGGCCGGGGCTGGGCGCAGGTATATCAGGGCGTTTGTGAGCGGCTTCTTCGTGGCAGTGCCCGTAACTGTCACTGTTCTGGACCGCTTTGCCTATGTAGCACGAGTAGAAGGAGCCTCAATGCAGCCTTCCCTGAATCCTGAGGGGAATGTGACAGGTTCTGACGTGGTGCTCCTGAACCGCTGGAGTGTGAGGAACTACCAAGTACGTCGAGGAGACATTGTATCAGTCCTGTCTCCCAAGAACCCGCAGCAGAAGATCATCAAGCGGGTCATAGCCCTTGAGGGAGACTTCATCAAGACGCTTGGCTATAAGAACCGCTATCTCAGGGTCCCGGATGGCCACTTTTGGATCGAGGGGGACCATCACGGCCACAGTCTGGACAGCAACAGCTTTGGACCGGTGTCTCTGGGGTTGGTCCACGGCCGTGCCTCCCACATCATCTGGCCGCCCAATCGGTGGCAGAGGATCGAGCCGTCCCTCCCCCCTGAGCGGAAGCCCTTGTTGAACTGGCACGGGGACACAACAGAGGAGGAGGACTGAGGAGAGGCCTGCTCATGGCTGTATACATACTGTACCTACTACCTGCactctctgtcatacagtacatgtgAAAATGTCATAATCCTTTGATGTGGCACAGTTATGATATCTCTTTGTTGTTGAGAAGCTGAGTGTGTCAATGGATCAGATACCCATTACCCATACAGTTGCGGCCACATTTATAGGCACCCTtgcacttttcttaaataattGCCTATTTCTTCTACAATAAGTTGAAAAATAAAGTttggtctccacaccttgttTTTGGGATATTCAACATTGCAGAACctattttgtttttgtaaatataagtttaacatttttatttaaaaaataaagaccAATGGCATGGATGCAATTATTGGCACCCCGGAGCTAGTACTTAGTTGCACAGCCTTTGTCAAAGATAACTGCCAAGAAATGCTTATTGTAGCACACTTCTACTGTTTTCACCTCTCGCCATAGGTTAtgattcagatctggactctTTACTGGCCACTCCAGAACAGATTTCTTCTTGAACCTTTCCATGGTGATTTCTATGTATGTTTGGGGGTTGTTGTCCTACTGTGGAAGCCAGTTTTTGGACACTGGATTGAACATTGCACTCCAAAACACCCTTGATAATCTGCTGATTTCATGGCTTGCACACATTCAAGGCGCCCAGTACCAGAGGCAGCAAAGCAATCCCACATCATTATTGAACCTCCTCCATAATTGGTTTTAGTCTTGGTAAACATAGGAAGACCCCACTGCTGAAGGAGACAAGTAAGCCTGATTGAACTTCTCAAAACCCCACCTAAACAAGGCTAAATCCTGGGGGGGGGGATGCTCTGTGGGCCAATGAAACAAAATTAGAGCTCTTTGGCAATACAGATCAGCGTTCTGTTTACTGGCCAAATTAAGCGTTCAATGAAAAAAAGAACCCTCCCTACAATGAAAGATAAGGGAGGTTTAATCATGCTGTGGTGTTGCTTTGCTGCCTCTGGTACTGGGGACCTTGAATGTGCACAATCCCAGTGTCCAAAAACTGGGTCTCCATTGAAGGTTGTGTCTTCCAGCGggacaacgaccccaaacacacatcAAAAAGCACCCAGGAATGGTTAAGAAGAGATGTTGGACTGTTCTGGAGTGGCCAGCGAAAAGTACAGCTCTGAATTACATCCAAAACCTACGGCGAGGTCCAATATGGCGAACGGTTGGTAAAGGGCACCCATCAAATGTTGAATAATTACAGCAGTTTGCTTCTGAAAAGTGGGCCAAATTGCTAGTAGAAAGGTACAGAAAGCTCATTGATGGTTACAAGAAGCATAAACTTATGttgacaaaatatattttttgaatgTCATCTTATTTTAGAAGAAATAGggaattatttaagaaaagtATGAAACTGTATGTCTGTGGCcaattgtaaaaaatatttttaaaacattttgcaaaCATGTAATGTGAACAACTGAACGCTGAGATATATATTTGTATGTTGTGTTATCAGAATTTCAGACTAGTGCAGTACCATGTTATTACATGTATGGAAATATTAAACTAAAACGGGTTGGGCTTTGAAGGAGCCTGTGGCATGAAAGGCT
>TU57398
CCAGAAGTGACAGAAAGGAGAACGAGCACGGAAGTCAAATATCTGCCTTCCCTGAATCCTGAGGGGAATGTGACAGGTTCTGACGTGGTGCTCCTGAACCGCTGGAGTGTGAGGAACTACCAAGTACGTCGAGGAGACATTGTATCAGTCCTGTCTCCCAAGAACCCGCAGCAGAAGATCATCAAGCGGGTCATAGCCCTTGAGGGAGACTTCATCAAGACGCTTGGCTATAAGAACCGCTATCTCAGGGTCCCGGATGGCCACTTTTGGATCGAGGGGGACCATCACGGCCACAGTCTGGACAGCAACAGCTTTGGACCGGTGTCTCTGGGGTTGGTCCACGGCCGTGCCTCCCACATCATCTGGCCGCCCAATCGGTGGCAGAGGATCGAGCCGTCCCTCCCCCCTGAGCGGAAGCCCTTGTTGAACTGGCACGGGGACACAACAGAGGAGGAGGACTGAGGAGAGGCCTGCTCATGGCTGTATACATACTGTACCTACTACCTGCactctctgtcatacagtacatgtgAAAATGTCATAATCCTTTGATGTGGCACAGTTATGATATCTCTTTGTTGTTGAGAAGCTGAGTGTGTCAATGGATCAGATACCCATTACCCATACAGTTGCGGCCACATTTATAGGCACCCTtgcacttttcttaaataattGCCTATTTCTTCTACAATAAGTTGAAAAATAAAGTttggtctccacaccttgttTTTGGGATATTCAACATTGCaacatttttatttaaaaaataaagaccAATGGCATGGATGCAATTATTGGCACCCCGGAGCTAGTACTTAGTTGCACAGCCTTTGTCAAAGATAACTGCCAAGAAATGCTTATTGTAGCACACTTCTACTGTTTTCACCTCTCGCCATAGGTTAtgattcagatctggactctTTACTGGCCACTCCAGAACAGATTTCTTCTTGAACCTTTCCATGGTGATTTCTATGTATGTTTGGGGGTTGTTGTCCTACTGTGGAAGCCAGTTTTTGGACACTGGATTGAACATTGCACTCCAAAACACCCTTGATAATCTGCTGATTTCATGGCTTGCACACATTCAAGGCGCCCAGTACCAGAGGCAGCAAAGCAATCCCACATCATTATTGAACCTCCTCCATAATTGGTTTTAGTCTTGGTAAACATAGGAAGACCCCACTGCTGAAGGAGACAAGTAAGCCTGATTGAACTTCTCAAAACCCCACCTAAACAAGGCTAAATCCTGGGGGGGGGGATGCTCTGTGGGCCAATGAAACAAAATTAGAGCTCTTTGGCAATACAGATCAGCGTTCTGTTTACTGGCCAAATTAAGCGTTCAATGAAAAAAAGAACCCTCCCTACAATGAAAGATAAGGGAGGTTTAATCATGCTGTGGTGTTGCTTTGCTGCCTCTGGTACTGGGGACCTTGAATGTGCACAATCCCAGTGTCCAAAAACTGGGTCTCCATTGAAGGTTGTGTCTTCCAGCGggacaacgaccccaaacacacatcAAAAAGCACCCAGGAATGGTTAAGAAGAGATGTTGGACTGTTCTGGAGTGGCCAGCGAAAAGTACAGCTCTGAATTACATCCAAAACCTACGGCGAGGTCCAATATGGCGAACGGTTGGTAAAGGGCACCCATCAAATGTTGAATAATTACAGCAGTTTGCTTCTGAAAAGTGGGCCAAATTGCTAGTAGAAAGGTACAGAAAGCTCATTGATGGTTACAAGAAGCATAAACTTATGttgacaaaatatattttttgaatgTCATCTTATTTTAGAAGAAATAGggaattatttaagaaaagtATGAAACTGTATGTCTGTGGCcaattgtaaaaaatatttttaaaacattttgcaaaCATGTAATGTGAACAACTGAACGCTGAGATATATATTTGTATGTTGTGTTATCAGAATTTCAGACTAGTGCAGTACCATGTTATTACATGTATGGAAATATTAAACTAAAACG

Function

NR:

description
PREDICTED: mitochondrial inner membrane protease subunit 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603465.2 False 2302 mRNA 0.45 6 47430652 47579162
XM_036979007.1 False 2275 mRNA 0.45 7 47430735 47579162
TU57398 True 1992 lncRNA 0.44 6 47430756 47579126

Neighbor

gene id symbol gene type direction distance location
LOC110524097 LOC106573247 coding upstream 29508 47383613 ~ 47401144 (+)
LOC110524092 LOC106573246 coding upstream 49042 47340166 ~ 47381610 (+)
lamb4 lamb4 coding upstream 90653 47316298 ~ 47339999 (+)
LOC110520864 NA coding upstream 170428 47227246 ~ 47260224 (+)
LOC110524064 NA coding upstream 184204 47243857 ~ 47246448 (+)
LOC110524160 LOC106573252 coding downstream 154394 47733556 ~ 47769809 (+)
LOC110520968 LOC106573253 coding downstream 209905 47789067 ~ 47824464 (+)
LOC110524181 LOC106573253 coding downstream 245374 47824536 ~ 47853332 (+)
rpgrip1l rpgrip1l coding downstream 370303 47949465 ~ 47978305 (+)
LOC110524199 LOC106573256 coding downstream 403884 47983046 ~ 48013346 (+)
G50682 NA non-coding upstream 183406 47246868 ~ 47247246 (+)
G50759 NA non-coding upstream 191645 47214720 ~ 47239007 (+)
G50765 NA non-coding upstream 208783 47160234 ~ 47221869 (+)
G50746 NA non-coding upstream 326304 47054346 ~ 47104348 (+)
G51442 NA non-coding downstream 8861 47588023 ~ 47629944 (+)
G51503 NA non-coding downstream 109492 47688654 ~ 47691037 (+)
G51520 NA non-coding downstream 140749 47719911 ~ 47775018 (+)
G51946 NA non-coding downstream 294371 47873533 ~ 47874484 (+)
LOC110524042 NA other upstream 569188 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 1437761 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 1693872 45730241 ~ 45736780 (+)
G49142 NA other upstream 2012472 45414706 ~ 45418180 (+)
G52080 NA other downstream 427512 48006674 ~ 48024958 (+)
G52324 NA other downstream 801380 48380542 ~ 48383257 (+)
G53181 NA other downstream 1314335 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 2458412 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3870660 51449353 ~ 51451460 (+)

Expression


Co-expression Network