LOC110524181 (LOC106573253)


Basic Information

Item Value
gene id LOC110524181
gene name LOC106573253
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47824536 ~ 47853332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979069.1
ttctgcAGTTTGATGTTTTACCAAAACAAATACATAGTTCCTTCTTGAATAGTCAGTACTATGCCAAACTGTACGAAGGAAACTTAGTGTGACGTCAACATATTAAGTGTATATCCTCTACTCTTCAAATGGCCTCCTTGATTTACCCCTTGTGTAATGGGGGAAACAGGCGGTGGACTCAAATGACACAGGTTTCAATTCTTCAGACCCCCACTAAATATACTGCACTACTCTCTCCAGTGTGCATCGAcagcccctctcctccacctattGGCTAACACGCCTGTATTGATTTCTATCTGACCGGTCCGCTGGCTGGTTAAACCAATCCCTCCCTTCCCACTGAAGCTCTGGCGTTCGAGTGGGAGCACTTACAAAACAATGGTCTTAAGGAAATCAGACGCTTCAGCTACAACAAACAAGCAGTTAGTAAACTTCTTAGCATGACGAaatgagggaggatggagaggtggagggacagagagatggagggagagagactcccCACCTTTATCAGAGGGACAGGAGAGCCAGATTAGAGAAGAACATGTGACAAAAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAACCTATGATTCTATCCAAGATTAAAGGTGGAAGGTGTTAAAAAATCTCAACAACCAGCTGTTGTGAACCATGATAGGTTTAATTTTTGTAAATGATTAAAATGATCAAATAATACATTATTGACAAATTCTGCAGACAAAACTGAACACTATTAATATTAATACTCCTATAGGAATGACGTCTTATACTCTAACAAGAACCATAATATTCAATATTCTCTTTCTCCTATGAACTGTACTGCCCGATGGCCGTTCTACAACTGTTTTGTGTTAACCTGCTGCTGGAAACCAAGGGGGTGAGTAGTGGTATTTTTACATGGTCCATGTGCCTCCTTTCTGTACTGATCAAACATGTTGCTGCTGGCTTACAGCTAAAACAAAACATCCCCAATACTTTTATTTCAATTAGCTAAGCATTGATAATTCATAGTGCTCTTTCATAGTGCTCTGGCAGTGTCAAAGATTGGACAAAGGTTGGGTGTCTCGCTGTTCTTTAAAACAGGAAGAACATTTATTCAGAAGTCTACTAAATGGGATTCACACCAACATCCAATTTCTGACATGTATCAACTTTTAAGGTAtgacccaggtgcagacagtgttgaagaaACTGAAGTTTATTCTTTatacaggggcaggcaaatgacaggtcaaggcaggcaggggtcaaggcaggcagaacagGCAGAACcgggaaactagaaaacaggagtaAGGAACAGGCGGGAGCAGGGAAACAAAACGCTGGTAGGTTCTACGAacaaacaaactggcaacagacaaacagagtacACAGGTAttaatacacaggggataatggggaagataggtgacacctggaggggagtggagacaagcacaaagaaagTTGAAACAAATCAGGGCATGACAGCATATGTTTAtctacaaaacaaacaaaaagctGAAATTGTTTTGCAAGGCACAAAAACACACCACCCTACATTCTGACATGCCTTGGTTCTCCCTATCACCctacagtcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtattgtcCTACAGGGCTGGTTATTTTTTATCAAGCCTTTCTTCAGGCGTCTGAGGTTTTGTTTAGTATTACGGTCAGTCAGTGTAATGGGCCAGAGAATCCAAATGACTGTATCCACTGAGTTTAGCTCACTCTGTAGTCATGGGCTAGGTCCCAAATgacaccgtattccctatataatgcactacttttcatcagggcccatagagctacTTAagagactagggtgccatttgggatgcagacatgaCGCCGGAGCCCAGATGATCATGGTGTGTAATGATATTGTAATTGAATGGTAATTAAAAGTTGAAAAAACACACAGCTTTCACTGCCTGAAGGCAGATTTATACCACTATACTGTCCTCACCAGATGAGAGCTACTGATCGTTTTTTCGTAGAATGAAACAATTCCATGAACTTTGcagtgttttttaaattttatgtAGGTTTTTTGTTTGAACATTTGGTGTGTTTAAACACAGAATTTCACTGCCACTGTCATTTGTACAGAAATGCAGCATTACTTTGGTTTAGTTGAACCCCAACCAATACTTTCTCTCTAACTGGCTCCACACCAGTATGCTACAACACAAAGGCATTATTTCACTTGCTATGAAAACTTTGTTGAGGTATGTCTGTTGAGAATGTTTCAACCAGCAGAGCATATGGTAGCCTATTGCCACAGTCCGGCTTTGAAAGGCAACTGCTGAAGCCAGAGCAGGAATTTCACACAGCGTTGAGTGAGACTGCATAAACAAGCGCTAAGCTGTCTATTGAAAGGCTCCAAAGCAAAAGACCTCGTCCATATGGCCTCTCCTACAACTCTCCCTCCTTCAGTCAGTTTGTATAGCCCCCCCCGATATCAGCTCCATGGGCCCCACCATGCAGAAGTAACAACATCAATGGTGTAAACCCTTGCCACTTGAGATTATTACATTTCTTTTTATGCTTCACTTGATCAAAATGGAAGAAGTGGAATTTACGCCTTTTTGATGTTCTTTTTCCTGCTGCTTTCAGCGAGGCATTGGGAACTGGTTTTGTTGTTCGTCCCTGTACCAGAATACCACCCACTAAAGGGCCACAGATGCCAATCTGATGGTAGCAGACGGTCGGATGGCAGTTACCAGTTTGAACAGGGTCACTGTTGTCAAACTGTCCCATGATGCATGGCAGATACCTCCCAGAAGgcttctctctctattcatggGCCGGATTTAAAACACCCTGTTTTAAAGAAAGGTTGTACCTTACGGCCACAGTAAATCTAATGCAATTTATGGTGTGCCATAATGCTAACTAACATGGGACATTTTGTAAACAGTAGGTACTGGTTTAAACACAATATGATACTGTTCGATTGTATTGTATTCAGCAACTATGTGCATCATTACTAATCCTATAAGTGTAACCgcaaaacatttatttcattttttattattttttttaaatcgttgATGTAAAGTGGACAGTCATACTGGTCACAGTTGCTCATCATAACATGGAGAGTGACAGTAGCTCCAGACCTGGATGGAGAAGCGTTTTTTTTAATCAGTTTGTGTCTGGAGCGTTGGGGAGGCCAAACAGTCTGACGGAGTGACGGAAGAACCCCAACAGGCATCACAGAGCTCGGTTAGCACCTTGTAATGAAACCAGGCCTGGGTAAAGCAGCTTGGCAGCATCCCGCCTCGACGCGCGCAGTGGTCAGtctacattaacacacacacacacacgcatgcatgcgctccccacacacacacttaaagggGGCTGCTGCAGGCACCCAAAAATAACTCCCGTTAGCTATCCCGCAGACagacattcccccccccccctcctcccagccATTGGTTTCTGCTAGATTTCCGCGCTCTCGGTTGTTGGCTGAATGATATATATTGGCGAGAGATAATTAAACGCTTGGAAACCAGTGGGAAACACTGTTCTATTTGTTTCATCTAATCTACTGTACCGCAACATGGTAGTGACAGTGTAGTGACAGTGTGAGGTTGGTAGGGAGCGGGACGGGGTAGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGGGGTGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGgggtggaaagagttttaaccatcTCAGTGTTACAAGATACAAAGAATCAGTTCAGAAGGACAAGAAGATTACTGTTACTATAGTTCCCTGCATTCTCTATGGGGACTATCTTAATCTTAAAAGGAAGATTACGGGGAACTCTTGTTGATTGAAGGGTTTAGTttgaacccatgccaaatctgaaCAGAATAGGACCAAAGGTGTCAATGAATGGACATGTCAGAGAGTGAACCCATCAAAGCatgcctctcctctcacctctctctactTTGATGTGCTTCGACTGGGAATGTGGACGGAGGGGAATAGCTAGCGTCCCGGCTCTACATCAATACGTCCACGCGGACAATAAGAATAGCTGCTCTGGAGAAAGGCAGAACAGGGATGGAATCCGGACATAATACAAAGGGATACACAGTTTACGGCGCTTCACTGGGCAACCAAGCAAGGCTGCGTGGAGGCTGTGGACATGATGGCTCGCACCGGCGTGGACGTCAACATCAGATCGGGGGGCTATACAGCGCTTCACCTGGCCTCTATACACGGACACCAGCACGTCATCCAGCTCCTGATCAACATCTACAATGCCAGAACTAACATCAGGGACTACCATGGGAAGCTTGCAGCCCATTACTGGAGTGGCAATGCTGATGTGTTCAACAAACCAGGCTCGCAGTCATGTGGGAAATGGTCATCAAAAGGAGGAAGAAAGGCCCAGCGCTACACCAACCtaccctctctgctcctctctcgcTCGCGGAGCCAGGGGAACCTCAACAACCTGGAGTTTGGGACTGCGCCTCAGACCCCACGGCCCCCCCGCTCCCCATCCAGTATAGACTTCCACAGCTTTCAATCCCCACAGCTCTATGGAGATCATTTCTGATTAAAGATAGataataattgttttattttgcatcccaaatggcaccctattccctatatagtgcatatatatatatat
>TU57619
CTCCCAGAAGgcttctctctctattcatggGCCGGATTTAAAACACCCTGTTTTAAAGAAAGGTTGTACCTTACGGCCACAGTAAATCTAATGCAATTTATGGTGTGCCATAATGCTAACTAACATGGGACATTTTGTAAACAGTAGGTACTGGTTTAAACACAATATGATACTGTTCGATTGTATTGTATTCAGCAACTATGTGCATCATTACTAATCCTATAAGTGTAACCgcaaaacatttatttcattttttattattttttttaaatcgttgATGTAAAGTGGACAGTCATACTGGTCACAGTTGCTCATCATAACATGGAGAGTGACAGTAGCTCCAGACCTGGATGGAGAAGCGTTTTTTTTAATCAGTTTGTGTCTGGAGCGTTGGGGAGGCCAAACAGTCTGACGGAGTGACGGAAGAACCCCAACAGGCATCACAGAGCTCGGTTAGCACCTTGTAATGAAACCAGGCCTGGGTAAAGCAGCTTGGCAGCATCCCGCCTCGACGCGCGCAGTGGTCAGtctacattaacacacacacacacacgcatgcatgcgctccccacacacacacttaaagggGGCTGCTGCAGGCACCCAAAAATAACTCCCGTTAGCTATCCCGCAGACagacattcccccccccccctcctcccagccATTGGTTTCTGCTAGATTTCCGCGCTCTCGGTTGTTGGCTGAATGATATATATTGGCGAGAGATAATTAAACGCTTGGAAACCAGTGGGAAACACTGTTCTATTTGTTTCATCTAATCTACTGTACCGCAACATGGTAGTGACAGTGTAGTGACAGTGTGAGGTTGGTAGGGAGCGGGACGGGGTAGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGGGGTGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGgggtggaaagagttttaaccatcTCAGTGTTACAAGATACAAAGAATCAGTTCAGAAGGACAAGAAGATTACTGTTACTATAGTTCCCTGCATTCTCTATGGGGACTATCTTAATCTTAAAAGGAAGATTACGGGGAACTCTTGTTGATTGAAGGGTTTAGTttgaacccatgccaaatctgaaCAGAATAGGACCAAAGGTGTCAATGAATGGACATGTCAGAGAGTGAACCCATCAAAGCatgcctctcctctcacctctctctactTTGATGTGCTTCGACTGGGAATGTGGACGGAGGGGAATAGCTAGCGTCCCGGCTCTACATCAATACGTCCACGCGGACAATAAGAATAGCTGCTCTGGAGAAAGGCAGAACAGGGATGGAATCCGGACATAATACAAAGGGATACACAGGTTATGATGCCCACCGTGTATCACATTGTGATTGATTAGAATGGTTAGAACAGTGATCCTACATTAAACTTtcactccttccttcctttcgTCTTGTTTTTCTTCTGTCCCCGTGAATTGGACATCAAGTTTACGGCGCTTCACTGGGCAACCAAGCAAGGCTGCGTGGAGGCTGTGGACATGATGGCTCGCACCGGCGTGGACGTCAACATCAGATCGgacaatgacccaaaacacacctccaggctgtgtatgggctatttgaccaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacctgacttcaacccaattgagatggtttgggatgagttggaccgcagagtggaggaaaagcagccaataagtgctcagcatatgtgggaacttcttcaagactgttagaaaagcattccaggtgactattttggttactaaa
>TU57621
CTCCCAGAAGgcttctctctctattcatggGCCGGATTTAAAACACCCTGTTTTAAAGAAAGGTTGTACCTTACGGCCACAGTAAATCTAATGCAATTTATGGTGTGCCATAATGCTAACTAACATGGGACATTTTGTAAACAGTAGGTACTGGTTTAAACACAATATGATACTGTTCGATTGTATTGTATTCAGCAACTATGTGCATCATTACTAATCCTATAAGTGTAACCgcaaaacatttatttcattttttattattttttttaaatcgttgATGTAAAGTGGACAGTCATACTGGTCACAGTTGCTCATCATAACATGGAGAGTGACAGTAGCTCCAGACCTGGATGGAGAAGCGTTTTTTTTAATCAGTTTGTGTCTGGAGCGTTGGGGAGGCCAAACAGTCTGACGGAGTGACGGAAGAACCCCAACAGGCATCACAGAGCTCGGTTAGCACCTTGTAATGAAACCAGGCCTGGGTAAAGCAGCTTGGCAGCATCCCGCCTCGACGCGCGCAGTGGTCAGtctacattaacacacacacacacacgcatgcatgcgctccccacacacacacttaaagggGGCTGCTGCAGGCACCCAAAAATAACTCCCGTTAGCTATCCCGCAGACagacattcccccccccccctcctcccagccATTGGTTTCTGCTAGATTTCCGCGCTCTCGGTTGTTGGCTGAATGATATATATTGGCGAGAGATAATTAAACGCTTGGAAACCAGTGGGAAACACTGTTCTATTTGTTTCATCTAATCTACTGTACCGCAACATGGTAGTGACAGTGTAGTGACAGTGTGAGGTTGGTAGGGAGCGGGACGGGGTAGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGGGGTGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGgggtggaaagagttttaaccatcTCAGTGTTACAAGATACAAAGAATCAGTTCAGAAGGACAAGAAGATTACTGTTACTATAGTTCCCTGCATTCTCTATGGGGACTATCTTAATCTTAAAAGGAAGATTACGGGGAACTCTTGTTGATTGAAGGGTTTAGTttgaacccatgccaaatctgaaCAGAATAGGACCAAAGGTGTCAATGAATGGACATGTCAGAGAGTGAACCCATCAAAGCatgcctctcctctcacctctctctactTTGATGTGCTTCGACTGGGAATGTGGACGGAGGGGAATAGCTAGCGTCCCGGCTCTACATCAATACGTCCACGCGGACAATAAGAATAGCTGCTCTGGAGAAAGGCAGAACAGGGATGGAATCCGGACATAATACAAAGGGATACACAGGTTATGATGCCCACCGTGTATCACATTGTGATTGATTAGAATGGTTAGAACAGTGATCCTACATTAAACTTtcactccttccttcctttcgTCTTGTTTTTCTTCTGTCCCCGTGAATTGGACATCAAGTTTACGGCGCTTCACTGGGCAACCAAGCAAGGCTGCGTGGAGGCTGTGGACATGATGGCTCGCACCGGCGTGGACGTCAACATCAGATCGGTGAGCGAACGCCGCAGTGACAGGTGGTGTCGGGCTGTGAAGGGTCAATGACTTCAGTTCACACTGACGCCTTACTCGCTCGCACCTCATACAGGCCACAGCTACCGCATCTCCTCACGCAGTTATCATTTTC
>TU57611
gaagagtagctgctgctttcgcaacagctaatgcggatcctaataaaataccaaaaatacCAAAATATGAAATGAGCATTGACAAACAATTTACAAAGTCAAATGACCTGTGTTGGTAGTGTAAAATGAGGTTGTGCCTCTGTCTCTTGATGTTTTCTAATTCTCCCTGTATTCCTCTGGCCTTCTCCATGCCTGGCGATTTGACTGTCGACACGTTCTGCTCTGAAGGGGGGCTATACAGCGCTTCACCTGGCCTCTATACACGGACACCAGCACGTCATCCAGCTCCTGATCAACATCTACAATGCCAGAACTAACATCAGGGACTACCATGGGAAGCTTGCAGCCCATTACTGGAGTGGCAATGCTGATGTGTTCAACAAACCAGGCTCGCAGTCATGTGGGAAATGGTCATCAAAAGGAGGAAGAAAGGCCCAGCGCTACACCAACCtaccctctctgctcctctctcgcTCGCGGAGCCAGGGGAACCTCAACAACCTGGAGTTTGGGACTGCGCCTCAGACCCCACGGCCCCCCCGCTCCCCATCCAGTATAGACTTCCACAGCTTTCAATCCCCACAGCTCTATGGAGATCATTTCTGATTAAAGATAGataataattgttttattttgcatcccaaatggcaccctattccctatatagtgcatatatatatatatagtgcatatatatatatatatatatatttcagTATAGCTAGCTACTCTCGCTTTTACCTTTGTTGATATATATTTTCAGAAGTGTATTACATTTATGAACGCTCTCCTTGCATTCATGATTGGATTCCACTGGGCACCAACtcgttgaatcaacattgtttcaacgcaATTTGTCAACGAATTGTGACATACCAATCTACGTGGAAACTACGTTGGATTTGAAAAAGTAATCAACTGCTGTTTTGAGAATGAAATTGggaccacaggattatgtcatcatggtaactaaatttcaacatagacaaaccttgaa
>TU57615
ATGCAGATGGACAGAATGAGAGACACACCGGTTATTAAAAAATAAACTGCTAACAAATACTTCACTCtgcctgtaacggttttctttgggtgaaggagagtcggaccaaaacgcagcgtgatgatgattcatgtttgtttaataaaaggaaaaaactatacatgaataacctacaaaataatgaaatgtgaaaacctaaacagtcctatctggtgcaaacacagagacaggaacaaggacaatcacccacaaacacacagtgaaacccaggctacctaaatatggttcccaatcagacaatgactaacacctgcctctgattgagaaccataccaggccagacatagaaatagacaaacaagacatccaacatagaatgcccacccagctcacgtcctgaccaacactaaaacaaggaaaacacacacgaacgatggtcagaacgtgacactgccGTTCGCAATCCATATTCCAAAGCACTTCCCACAGACCTGGTGCTCTAAGATCCCCGTTGGATTTTATAACACAGCATGAGCAAAATGAGAGTTGAGTTCATAACACTGATTTGTTTGTTTTGGGACTGTTAGGGCTATACAGCGCTTCACCTGGCCTCTATACACGGACACCAGCACGTCATCCAGCTCCTGATCAACATCTACAATGCCAGAACTAACATCAGGGACTACCATGGGAAGCTTGCAGCCCATTACTGGAGTGGCAATGCTGATGTGTTCAACAAACCAGGCTCGCAGTCATGTGGGAAATGGTCATCAAAAGGAGGAAGAAAGGCCCAGCGCTACACCAACCtaccctctctgctcctctctcgcTCGCGGAGCCAGGGGAACCTCAACAACCTGGAGTTTGGGACTGCGCCTCAGACCCCACGGCCCCCCCGCTCCCCATCCAGTATAGACTTCCACAGCTTTCAATCCCCACAGCTCTATGGAGATCATTTCTGATTAAAGATAGataataattgttttattttgcatcccaaatggcaccctattccctatatagtgcatatatatatatatagtgcatatatatatatatatatatgcaggaCACATGAAAcccat

Function

NR:

description
PREDICTED: protein HOS4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979069.1 False 4901 mRNA 0.45 7 47824536 47851159
TU57619 False 1817 lncRNA 0.46 3 47827531 47834361
TU57621 False 1712 lncRNA 0.47 2 47827531 47830029
TU57611 False 997 lncRNA 0.43 5 47836164 47853332
TU57615 True 1085 lncRNA 0.44 4 47839559 47851286

Neighbor

gene id symbol gene type direction distance location
LOC110520968 LOC106573253 coding upstream 72 47789067 ~ 47824464 (+)
LOC110524160 LOC106573252 coding upstream 54727 47733556 ~ 47769809 (+)
LOC110524112 LOC106573249 coding upstream 245374 47430652 ~ 47579162 (+)
LOC110524097 LOC106573247 coding upstream 423392 47383613 ~ 47401144 (+)
LOC110524092 LOC106573246 coding upstream 442926 47340166 ~ 47381610 (+)
rpgrip1l rpgrip1l coding downstream 98306 47949465 ~ 47978305 (+)
LOC110524199 LOC106573256 coding downstream 131887 47983046 ~ 48013346 (+)
LOC118964788 NA coding downstream 296240 48147399 ~ 48163741 (+)
LOC110524253 LOC106573262 coding downstream 405708 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 632726 48483885 ~ 48510535 (+)
G51520 NA non-coding upstream 49518 47719911 ~ 47775018 (+)
G51503 NA non-coding upstream 133499 47688654 ~ 47691037 (+)
G51442 NA non-coding upstream 194592 47588023 ~ 47629944 (+)
G51946 NA non-coding downstream 22374 47873533 ~ 47874484 (+)
G51983 NA non-coding downstream 44668 47895827 ~ 47896045 (+)
G52034 NA non-coding downstream 74801 47925960 ~ 47926333 (+)
G52048 NA non-coding downstream 85229 47936388 ~ 47936693 (+)
G52063 NA non-coding downstream 93311 47944470 ~ 47944802 (+)
LOC110520864 NA other upstream 565638 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 963072 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 1831645 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2087756 45730241 ~ 45736780 (+)
G49142 NA other upstream 2406356 45414706 ~ 45418180 (+)
G52080 NA other downstream 155515 48006674 ~ 48024958 (+)
G52324 NA other downstream 529383 48380542 ~ 48383257 (+)
G53181 NA other downstream 1042338 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 2186415 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3598663 51449353 ~ 51451460 (+)

Expression


Co-expression Network