LOC118964788


Basic Information

Item Value
gene id LOC118964788
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48147399 ~ 48163741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979102.1
ttttgtagtgttcgtgtttatctttttttattaaacatgaatcaatataaccacgctgcgttttggtccgcctctccttcaccacaggaaaacccttacacttAATATGTTCAAAAAAAGCATATCCAGCCCTCCTCACAGGGAAACCCCCTACAGAGAGAACgtgttagagagagagtggtgcAATGGAACATTTCCCAGTTATGCTCATAGATTGTGATACTCCACAGAAACATTCAAACATGAATGGATCGATACTTCCAATCTGCCTGGCtctatgtctggctggctgggctgTATCTGGCACTTCTATTGAAGCTCAGAAGACCTCCTCTGTCTGTTACCTCTGTAACGATACTCAATGCCAAAATATTGAGTCTGTTTATGACCATTTGACGACTAATTCGACCCTGTGGTCACGAGGTGAAGTGGCTAAGCTGCCTCCCTGTCCCACAACCTCCCCTCCACCATCTGGAAAATGCTTGTTGTGTGTTAAGAGCCAGGAGGTCTACGCTGTGTGTGACTCAAAGATCATCAAGCCAGCCTTTGAGGGCCAAGGCAGCTCCATGCCTGTCATCGAAGCCAATTGTCCCAGCATTGTTTCAACTGATCAGACGGACGGAGCTGGAGGTTCAGCTTGGAGTCCTGatctATTTGCCCCCACAATGACCCCTGAGGGCACTGGCAGGTTATCCAAGGAAACAAGAATCACTATTGTGTCAATCCTATTTGCCTTCTCCGTCATCTTCATACTCATTGTTGTTTTGCGCAGAAGAACCAGATGAAGTGTTGTCTGGTGTCCACATCAGATGTCCACTTCAGAAGTCCACTCAGAGCAGCACCAGACCCAGTTAAAGTTATTAAAGAGAAAGGTTGATATTGTGTAAGACAAGGATAAGAGGAAGTGATGGACCTGAATGTTGTCTACTTCCTGGCTATGGTTTAACTTGAGGAAACAGTAAGCTCTGTTAGAAAGGTTGTTACATTTTGATAGCTTTTACTCTGCACTTTTGCAGCAGGGTACATGAGTGTCTTGGGATTCCTAGGGCCTGGAAGTAAAGTCAGGGAGAGATCTCAGTGCCAGACCTACAGAGGGTCCTGCCATTTTAAACCACATACTTTTTGATTCGCCAAGTTTGCGTGTTTTGCACGTCTATATGGTTGATTGAAACATATGGAATTAATAATTACGTTTTATTTATATTAATGtatttttattatgtttttaCTATTGATAGTGTTTACAAGGTACTGTAATTGCAAGTGCTTCTCATCGTATGTGCGCTTCCCTTGTCTAATGTCAGAATAAACAACACCAAAGAACTGGGA
>XM_036979105.1
tagtgttcgtgtttatctttttttattaaacatgaatcaatataaccacgctgcgttttggtccgcctctccttcaccacaggaaaacccttacacttAATATGTTCAAAAAAAGCATATCCAGCCCTCCTCACAGGGAAACCCCCTACAGAGAGAACgtgttagagagagagtggtgcAATGGAACATTTCCCAGTTATGCTCATAGATTGTGGTCTTTTATGACGGCTGGTTGTTGAGGGCGGAATCATAGTTTATCAAGCCAGCCTATCAAGAGACTCTTCTACTCTTCCTTACTTCCGCACTTTCATTCATTTCTGAACTTCTCGGAGTGGAAAGGAGTATACGCTTAGAGCGAGCAAGTTGAATGCAAGTTGCCGTAGGCAGTGTTTCAGAGACCCAAAGGCATTCCAGACGAGTTCAACCAACACACATCGAATTTACATACTCCACAGAAACATTCAAACATGAATGGATCGATACTTCCAATCTGCCTGGCtctatgtctggctggctgggctgTATCTGGCACTTCTATTGAAGCTCAGAAGACCTCCTCTGTCTGTTACCTCTGTAACGATACTCAATGCCAAAATATTGAGTCTGTTTATGACCATTTGACGACTAATTCGACCCTGTGGTCACGAGGTGAAGTGGCTAAGCTGCCTCCCTGTCCCACAACCTCCCCTCCACCATCTGGAAAATGCTTGTTGTGTGTTAAGAGCCAGGAGGTCTACGCTGTGTGTGACTCAAAGATCATCAAGCCAGCCTTTGAGGGCCAAGGCAGCTCCATGCCTGTCATCGAAGCCAATTGTCCCAGCATTGTTTCAACTGATCAGACGGACGGAGCTGGAGGTTCAGCTTGGAGTCCTGatctATTTGCCCCCACAATGACCCCTGAGGGCACTGGCAGGTTATCCAAGGAAACAAGAATCACTATTGTGTCAATCCTATTTGCCTTCTCCGTCATCTTCATACTCATTGTTGTTTTGCGCAGAAGAACCAGATGAAGTGTTGTCTGGTGTCCACATCAGATGTCCACTTCAGAAGTCCACTCAGAGCAGCACCAGACCCAGTTAAAGTTATTAAAGAGAAAGGTTGATATTGTGTAAGACAAGGATAAGAGGAAGTGATGGACCTGAATGTTGTCTACTTCCTGGCTATGGTTTAACTTGAGGAAACAGTAAGCTCTGTTAGAAAGGTTGTTACATTTTGATAGCTTTTACTCTGCACTTTTGCAGCAGGGTACATGAGTGTCTTGGGATTCCTAGGGCCTGGAAGTAAAGTCAGGGAGAGATCTCAGTGCCAGACCTACAGAGGGTCCTGCCATTTTAAACCACATACTTTTTGATTCGCCAAGTTTGCGTGTTTTGCACGTCTATATGGTTGATTGAAACATATGGAATTAATAATTACGTTTTATTTATATTAATGtatttttattatgtttttaCTATTGATAGTGTTTACAAGGTACTGTAATTGCAAGTGCTTCTCATCGTATGTGCGCTTCCCTTGTCTAATGTCAGAATAAACAACACCAAAGAACTGGGA
>XM_036979099.1
TCTGTATGAAAATGCATGTATTTCCTCACTCTCTTCGTTCTACAAGGAGCTGCTGTCGCGCAGTATCGTCTGCTGTCTTTTTACTGTCTCACTCTGCCTAACCTGGTTTACAGCTTTGGACAAGATACTCCACAGAAACATTCAAACATGAATGGATCGATACTTCCAATCTGCCTGGCtctatgtctggctggctgggctgTATCTGGCACTTCTATTGAAGCTCAGAAGACCTCCTCTGTCTGTTACCTCTGTAACGATACTCAATGCCAAAATATTGAGTCTGTTTATGACCATTTGACGACTAATTCGACCCTGTGGTCACGAGGTGAAGTGGCTAAGCTGCCTCCCTGTCCCACAACCTCCCCTCCACCATCTGGAAAATGCTTGTTGTGTGTTAAGAGCCAGGAGGTCTACGCTGTGTGTGACTCAAAGATCATCAAGCCAGCCTTTGAGGGCCAAGGCAGCTCCATGCCTGTCATCGAAGCCAATTGTCCCAGCATTGTTTCAACTGATCAGACGGACGGAGCTGGAGGTTCAGCTTGGAGTCCTGatctATTTGCCCCCACAATGACCCCTGAGGGCACTGGCAGGTTATCCAAGGAAACAAGAATCACTATTGTGTCAATCCTATTTGCCTTCTCCGTCATCTTCATACTCATTGTTGTTTTGCGCAGAAGAACCAGATGAAGTGTTGTCTGGTGTCCACATCAGATGTCCACTTCAGAAGTCCACTCAGAGCAGCACCAGACCCAGTTAAAGTTATTAAAGAGAAAGGTTGATATTGTGTAAGACAAGGATAAGAGGAAGTGATGGACCTGAATGTTGTCTACTTCCTGGCTATGGTTTAACTTGAGGAAACAGTAAGCTCTGTTAGAAAGGTTGTTACATTTTGATAGCTTTTACTCTGCACTTTTGCAGCAGGGTACATGAGTGTCTTGGGATTCCTAGGGCCTGGAAGTAAAGTCAGGGAGAGATCTCAGTGCCAGACCTACAGAGGGTCCTGCCATTTTAAACCACATACTTTTTGATTCGCCAAGTTTGCGTGTTTTGCACGTCTATATGGTTGATTGAAACATATGGAATTAATAATTACGTTTTATTTATATTAATGtatttttattatgtttttaCTATTGATAGTGTTTACAAGGTACTGTAATTGCAAGTGCTTCTCATCGTATGTGCGCTTCCCTTGTCTAATGTCAGAATAAACAACACCAAAGAACTGGGA
>XM_036979108.1
gactggacattggcgagaaATACTCCACAGAAACATTCAAACATGAATGGATCGATACTTCCAATCTGCCTGGCtctatgtctggctggctgggctgTATCTGGCACTTCTATTGAAGCTCAGAAGACCTCCTCTGTCTGTTACCTCTGTAACGATACTCAATGCCAAAATATTGAGTCTGTTTATGACCATTTGACGACTAATTCGACCCTGTGGTCACGAGGTGAAGTGGCTAAGCTGCCTCCCTGTCCCACAACCTCCCCTCCACCATCTGGAAAATGCTTGTTGTGTGTTAAGAGCCAGGAGGTCTACGCTGTGTGTGACTCAAAGATCATCAAGCCAGCCTTTGAGGGCCAAGGCAGCTCCATGCCTGTCATCGAAGCCAATTGTCCCAGCATTGTTTCAACTGATCAGACGGACGGAGCTGGAGGTTCAGCTTGGAGTCCTGatctATTTGCCCCCACAATGACCCCTGAGGGCACTGGCAGGTTATCCAAGGAAACAAGAATCACTATTGTGTCAATCCTATTTGCCTTCTCCGTCATCTTCATACTCATTGTTGTTTTGCGCAGAAGAACCAGATGAAGTGTTGTCTGGTGTCCACATCAGATGTCCACTTCAGAAGTCCACTCAGAGCAGCACCAGACCCAGTTAAAGTTATTAAAGAGAAAGGTTGATATTGTGTAAGACAAGGATAAGAGGAAGTGATGGACCTGAATGTTGTCTACTTCCTGGCTATGGTTTAACTTGAGGAAACAGTAAGCTCTGTTAGAAAGGTTGTTACATTTTGATAGCTTTTACTCTGCACTTTTGCAGCAGGGTACATGAGTGTCTTGGGATTCCTAGGGCCTGGAAGTAAAGTCAGGGAGAGATCTCAGTGCCAGACCTACAGAGGGTCCTGCCATTTTAAACCACATACTTTTTGATTCGCCAAGTTTGCGTGTTTTGCACGTCTATATGGTTGATTGAAACATATGGAATTAATAATTACGTTTTATTTATATTAATGtatttttattatgtttttaCTATTGATAGTGTTTACAAGGTACTGTAATTGCAAGTGCTTCTCATCGTATGTGCGCTTCCCTTGTCTAATGTCAGAATAAACAACACCAAAGAACTGGGA

Function

NR:

description
uncharacterized protein LOC109888711

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979102.1 False 1329 mRNA 0.43 8 48147399 48163741
XM_036979105.1 False 1554 mRNA 0.44 9 48147404 48163741
XM_036979099.1 False 1234 mRNA 0.44 8 48157569 48163741
XM_036979108.1 True 1129 mRNA 0.44 8 48158639 48163741

Neighbor

gene id symbol gene type direction distance location
LOC110524199 LOC106573256 coding upstream 134053 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 169094 47949465 ~ 47978305 (+)
LOC110524181 LOC106573253 coding upstream 296240 47824536 ~ 47853332 (+)
LOC110520968 LOC106573253 coding upstream 322935 47789067 ~ 47824464 (+)
LOC110524160 LOC106573252 coding upstream 377590 47733556 ~ 47769809 (+)
LOC110524253 LOC106573262 coding downstream 93126 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 320144 48483885 ~ 48510535 (+)
LOC110524302 LOC106573126 coding downstream 388340 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 427279 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 471754 48635495 ~ 48706569 (+)
G52174 NA non-coding upstream 8803 48138363 ~ 48138596 (+)
G52169 NA non-coding upstream 13934 48133265 ~ 48133465 (+)
G52107 NA non-coding upstream 92049 48055129 ~ 48055350 (+)
G52102 NA non-coding upstream 101659 48045503 ~ 48045740 (+)
G52101 NA non-coding upstream 102427 48044757 ~ 48044972 (+)
G52187 NA non-coding downstream 2873 48166614 ~ 48167114 (+)
G52148 NA non-coding downstream 9423 48173164 ~ 48187068 (+)
G52199 NA non-coding downstream 18943 48182684 ~ 48187583 (+)
G52200 NA non-coding downstream 19843 48183584 ~ 48188396 (+)
G52201 NA non-coding downstream 20386 48184127 ~ 48188957 (+)
G52080 NA other upstream 122441 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 888501 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1285935 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2154508 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2410619 45730241 ~ 45736780 (+)
G52324 NA other downstream 216801 48380542 ~ 48383257 (+)
G53181 NA other downstream 729756 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1873833 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3286081 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5502474 53632830 ~ 53705421 (+)

Expression


Co-expression Network