LOC110524302 (LOC106573126)


Basic Information

Item Value
gene id LOC110524302
gene name LOC106573126
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48552081 ~ 48590914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979176.1
cacaactacacacacaactACCACACCCACTTctaccacaaccacacccactactaccacaactaccacaGCCCCACCCACAACAGCTACAGCtctaacaacaactactacagtaCTGACTACGACCACAGAGTTGACCACCACCCCGCAGGTCGAGACCACCGAGGCAGTAAAGTGTTCATTTAACCTGACAAAAACCAGCGCCAATACGGATTCTATTGCTCTGGAATTGATAACAACAGGAGAAGCGTGTAACTTCACCGTGTTTTATGAGACTAGTCGGTCCGACAAAACGGATTGTTATCAACATGGGGAGTACACTAATGTGTATATCTGCGACATAAGGGATTTGGAACCAGGAACATTACACCAATTCGAAGTTATTTCGAAGAATGATGGAGAGAGGGGCAACGTATCAGTGCGTACAGACCCAGTGGGTCCATCCAGGTTGGACGTACTACCAGACCAGATCCAAGCAACCCAGTATAAGAGTCCTATTCAGGGTCAGGGTGGCTCCCATGGCCTGCACATATCCTGGCCTCGATCTCGTGGGCAGGTCGACTGGTATGAGGTCACACTACAGGACACCAAGACAGGGACGAGCCGCAGTACCCGCATCATGGGAACTGCCGCCACTCAGTCTCGCTTCACCGCCCTCACCCCTGGAACCCTCTATGCCCTCAGCCTGGTGGCAACGGCTGGGAATAAAACAGCCCTGCCAGTGCTGGCCACTGCAGCCACAGCTCCCTCAGCTGTCAGCGGCCTCCAGCTCTCACCCTCCTCCAGCAGCCTGGGTGTTTCCTGGCAGCCCGGTCCAGGCAGGAGAGAGGGTTTCAGGGTGCTACTGAGGGAGCAGCAGGGCGCCCTAGTCAGGAACGTCACCCTTAAGAGTAGTGTCACCTCCCACACCCTTTACGACCTGTTGCCTGGGACCCTGTACACCGTCACCGTGGTGACTGAGGCTGAAGGCCTCCAGAACGCCATCTCCAAACAAGCAGTCACAGTTCCTGTGGCGGTAACCAAGCTCTTCTTGGAGAACCACGGCAGTCTGGACACCCTGAGGGCCTCCTGGGTCAATGCTAGGGGCGGCGTGGATGCATACCTGGTCTCCCTGGCAACCCTAGGCTCAGCCAACCAGGATAGGAAGCTTCCCCCCAACGCCACTGAAGTGATCTTCAGCGGCCTGACCCCTGGACGGCCCTATCAGGTGACTGTGAGGTCAAAGGTCGGAGAGCAGACAACTGAGGCAGTGGCCACAGGCAGAACAGTGCCAGCCAAGGTGTCTCAGCTGTCCATGGTGGGCGTCATTGATGGCAGCACTCTGAAGAGTACATGGTTGCCCCCAAGAGGGGACTGGGAGAACTATCGTGTCCTGCTACTGAACGGCACAGTGGCTCTAGTCAATGAGACAGTGAGCAGGCTGGTTAGACAGTACTCCTTCTCTGTAGCTTCCTTGGGGCTGGTGCCTGGCAGGCTCTACACAGCTCAGGTCATGGTGGAGAGCGGTCTGTTTGGCAACACCGCTCAATGTCAGGGGAGGCTAGccCCTCAGCCTGTCCAGCAGCTGATGGTCCGTCACGGTGATGAGACGTCTCTGAGCGTGCTGTGGTCTCGCCCCGCGGGGGTGTGGGACGGGTACACCGTGGTCTTGAGACAGGGGGACACTGTTGTGTCACAGAGGACACTGTCCCGTGACGCCAGGGAGTGCACATTCAACATCCTCATGCCCGGATGCCAGTACGCCATTGCCGTCACGACCAACAGTGGGGGCCTAAACAGCTCGGCTTCAGTGATTGGACGAACCACCCCGGCGCAGGTGACCAGTCTGCGTGTGACCAACGGTGGCAGCACAGACAGCCTCCAAACCCAGTGGGAGCGGGCGGCCGGCGAGCTGGACTCGTACCGTGTGCTGCTTATCCACGACAGCAGTGTGATCAAGAACGAGAGCACCCCGGCCCACACCACGGCCTACAGCTTCCTGGCGCTGAAGCCTGGAGCCCTCTACAGGGTGGTGGTCACCACTGTCAGGGCCGGACAAGTCTCCAGACAGAGCGTGGCAGAGGGAAGCACAGTCCCTGCTGCCGTAGGCGAGGTGACAGTCAGTAACAACGGTCGTATGGACTTCCTCAGTGTGTCGTGGCGACCAGCCCAAGGCGACGTGGATAGTTACCTGGTCACCCTGAAGGACCGCGAGAGGACCGTCCACACCCTGGTCGTGTCCAAGTCCAGCCCTGAGTGTGTGTTCAAGTCCCTGGTGTCTGGACGGCTCTATAACATCTCCATCGTCTCCCGCAGTGGAGTCTACGAAAACCACACCATCGTGCAGGAACGCACACAGCCCTCTAGTGTCCAGAACCCCACAGCGATCCACTCGGCCAGGGATGACTACCTAAAGGTGTACTGGCGCCATGCGGCAGGGGACTTTGACTACTACCAGGTGGTCATCAAGCACAACAACATCTTCCACCAGAACAAGACGATTATGAAGAGCCAGAACGAGTGTGTGTTCAACGGCCTGGTGCCCGGGAGACTCTACACTGTCATCGTCAGCACCTGGAGCGGGAAGTATGAGACCAGCGTGTCCACGGACGGAAGGACCTTCCCTGCGGCGGTGAGATCACTAGCTCTGGCTGGGCGGGGCACGGAGGACCTCCGTGTCGCCTGGCTGGCTGCTCTGGGGGATGTGGATCACTACGAGGTGCAGCTCCTCTTCAACGACATGAAGGTGTTCCCGCCCATCACCCTGGGCAGCAGCGCGGGGGCGTGTGTCCTGTCCTCCCTCACCCCGGGACGCCTCTATAAGATCCACGTTTCCACCTTCAGCGGACCCAACCAGAGGGCCCAGTTCATAGAGGGCAGGACAGTTCCCAGCAAGGTCAAGAACATCCACGTGAGCAACAATGGGCAGAGCAACAGCCTGAAGATCAGCTGGACCCCGGGGCAGGGTGACGTGGACAGCTACTCTGTGTCGTTGTCACTGGACGGGCCAGAGGGACGCATGCTGGAGACGCGACCCGTACCCAAACACCCAAATCAGCTGGGATTCAACTCCCTGCAGCCTGGGCAGCTGTACAGTGTGACTGTAAGGTCTATCAGTGGTATACTGTTGAACAACAACACGGCCAGCGGACGCACCGtcccctCTGCAGTGACGGGCCTGCAGGCTGACAACAGACACACCACCTGCACTATTCAGGTGAGCTGGCAGGAGGCCCGGGGAGTGGCGGACGGCTACAGCCTGCAGCTGCTGGACGACAGGGGACACCTGGTCACCAACAGCTCCCAGGCCTCCTCTGGGTCCACTCTGCTCCAGCACCACTTCGACGGCCTCACCCCGGGGAAGAGGTACCACGTCCTGGTCCACACCACCAGCGGAGGGGTCCGCAGTGAGGGGGTCACCGCTGAAGCACGCACGCGTCCGGCAGCGGTTAGCGACCTCTCCATCCAggccaacagcagcagcagcctgtCCTTCCACTGGTCTCCCCCAGAGGGAGAGTTGGAAGGTTACGACCTCTACCTGTACAATGGAGACGACACCCTGTACGACCGGCGCAGCGGCCAGCCTAACACGCTGCAGGTCTCCTTCCAGGGCCTGAGGCCTGGTGCCCCCTACAGGATGGTGGTGTTAACACGCAGCGGAGAGCAGACCAATGACTCAGCTATCTGGGCCAGGACTGtCCCAGCTGCAGTGACGTCTCTGCAGGCCCGAAGTCATCCCCAGGCGGAGgagctccgggtgtcgtgggagCGTGCAGAGGGGGAGCTGAGCGGctacctgctgtctgtctacaaccCAGATGGCTCCCAGCAGGCAGAGGAGGCTCTAGGGCCCGACGCCACGGAGTATGCCGTCCCCACGCTGATCCCCGGGCGCCTCTACCATGCTGTCATCCTCACCCGCAGTGGAGAGCTCACAAACAGGGCCACCACTCAGGGCAGGACCGCCCCCAGACCCCCTACCTCTGTGTCATTCGGCGGGGTCACCAACACTTCCCTGGAACTGACCTGGAGTGGTCCTGCAGGCAGCGACTACGATGACTTTGACCTGCAGTGGGAACCGCGGGACCACCTGTTTGTGTTCAACCCCTACCACACCCGGACCTCCGGCAGCCGCATCCTTAAGGGCCTGTACCCCGGACGCTTGTACAACTTCAGCCTGCGTACTGTCAGTGGGGCTGTTGGTGGTGTTGGTGAGGATGGGAGCCCTGCCTACAGCCTGCCCATCCACAAGAGCATCCGAACCAAGCCAGAGCGTGTTCAGTACCTACACTGCCGCCCCCAGAACTCCACCTCCATCTCCTGCTCCTGGGGGCCCCCGGAGGCCGACTGTGACTCCTACACCATTGAGTGCCTCCACCAGGACTCCCGCACCCTGGTGTACTCCCGGCGTACGGGCCGCGACAGCACCCTCTACCACATCACCCAGCTGGAGCCGCACAAACGCTACACTGTCTCCATCAAGGCTATCTCCGACAGCATGACCAGCGAGGCCGCTGAGGATAGCGTGGTCACCATGATCGACCgccctcccctcccttccctcagcACCCGGGTTAACAACAGGGCTGCTCTCATCACCAAAAACACCATCTTCTTCAAGTTTAACTGCAGCTGGTTCAGTGACATCAACGGAGCAGTCAAGTTCTTCACAGTGGTGGTGACCGAGTCTGAAAacaATGAAAACATTCAACCAGAGCAGCACCACCCTCTACCCTCCTATCTGGACTACAAATTGAACAGTTCCGTCAAGGCCTACCAAACCAGCTACTTCCCCAGTCGCTGCACAGTGGGATCAGACAGCGAGACCCAGAGCTTTGCGATCAGCCTGGGTACGGGTATGGACACCCTCGGGGGGACATGTGACCACCTACAGGCCCAGGACAGGGAGCAGGacccagacaaacacagagaccacCCTTTCTGTGATGGCCCACTCAAACCCAAAACTGCATACAGGCTCAGTGTGCGTGCGTTCACCCAGCTTTTTGACGAGGAGCAGAGCAGATACACCCCGCCCCTCTACACAGACACTTACCTGTCCCTCCCCCTGGTCACAGAAGCAGAGCCCCTGAGCGGTGTGATCGAGGGCATCAGTGCCGGCATGTTCCTCATTGTCATGGTGGTGGGAGTCACTGCACTGCTCATCTGCAGACAGAAAGTTTGCAAAGTTAGTGTGCAGGAGCGGCGGGTGGTCCGACTGAGCATGAGGAGGGAGAGGCCCACATCAGGAGTGCACATGGGCGTCAGGGGTAACCGTCGTATTTCAAGCCCCGTCAAGATCATGCACTTTGAGTCCCACTACACCAAACTCCAGGCTGACTCCAATTATCTACTGTCTGAGGAGTACGAAGACCTGAAAGACGTAGGAAGGAACCAGCCCCTGGACACAGCCCTACTGCCAGAGAACAGGGGGAAGAACCGATACAACAACATCCTTCCCTACGACTTGACCCGTGTGAAGCTGTCCTATGTGGATGATGATCCGTGCTCTGACTACATCAACGCCAGCTACATTCCTGGGAACAACTTCCGTAGGGAGTACATCGCCACTCAGGGCCCACTTCCTGGAACCAAGGATGACTTCTGGAAGATGGTGTGGGAGCAGAATGTCAATAACATTGTCATGGTGACGCAGTGTGTGGAGAAAGGCAGGGTGAAGTGTGATCACTACTGGCCCTTTGACCAGGAACCTTTGTATTATGGAGACCTCATAGTCCAGATGCTGTCTGAGTCTGTGCTGCCAGAGTGGACTATCCGGGAATTCAAGATTTGCAGCGAGGACCAGTTGAACTACTCCAGGGTGGTGCGTCAGTTCCACTACACGGTGTGGCCCGACCACGGCGTCCCAGAGACCACCCAGTCACTCATCCAGTTTGTCAGGACCGTCAGGGACTATGTCAACAGGACCCCTGGGTCTGGGGCCACCGTAGCTCACTGCAGTGCTGGTGTGGGCCGTACAGGGACTTTCATATCCCTGGACAGAGTCCTGCAGCAGCTGGACACAAAGGACACAGTAGACATCTACGGAGCTGTCTTCGACCTGCGTCTCCACCGCTCACACATGGTGCAGACTGAGTGCCAGTATGCGTATCTCCACCAGTGTATGAGAGACGTCCTCCGAGCCAGGAAGCTTCGCAGTGAGCAGGAGAACCCCCTCTACCCCATCTATGAGAATGTCAACCCTGACCCCCAAAGAGATATGGTGTATGCCAGACGTTAAAGAGTGTCAGGACTACTGAAGGAGAGAACTGTTTGTACTTTCACTAGTATAGCACTGCAGGGACACATGTTCTACTATTTCTGTTGATTGTTCTTTTCTAGATATTATGGAATATAGAACACTTTATAGATATTAAATGATATGAGAATATATATTAACATTATTGTATATACTTGCCTTAtatctgtgtgtttgtatatatgCTTTACATTTGCATCCTTGGCTTTCGTACACAGTGTGTTCATTTTGTTTGTTAAGCTGCCATTTATACATTATTACGTAAaaacctgtaaaaaaaaaatgtcaaaaatcTGATACTGCATAAGTAAAAATGATCTAACAGTATTCACATATCTACAGTAAATGTACAGGCTATTGCATCTTTCACAAGTCACATTTTTCTCAAATGTTAGACAAAAATGCTTTCTGTTTGAAATTATACTTATTTTCATAAGCACTGAAATCATTCAAAAATATCTGAAATATGTATGTAGATAAACCCATTGCACATTTATTTGTGGATATTGTACAGCCCGTGCGATATATCGCTTGAATAGAAAACTAGTCATGTAAAAGGATGACCATATGAGTTATGAAAGCACACCGTTTATGTTGTGTAATCCATATATGTAGCCTGTAAGATGATAATGATTTTTGTGTATATTTTATGTATTTTAAAACATCGTTTGATGTATTTTAAAATCATGTCATGGAACTACAAATCACACACATCTTACAATGTGCAAATCCACAACTCACACATTGGCAAACATGATTGTAATCATCTGAGTGATTGATGGATTCTGTGAATCGTTACACAAATGATAGTAGTTACTGTATGCAGTTTCCCATTTTGCAATCTAAGTAGGCCTAGAAACGTATCAAGACGAGGGCATTAATATATTATTTGAGTGTTTCAATAAAATACTTAGA

Function

NR:

description
receptor-type tyrosine-protein phosphatase beta-like isoform X1

GO: NA

KEGG:

id description
K05694 PTPRB, PTPB; receptor-type tyrosine-protein phosphatase beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979176.1 True 7156 mRNA 0.55 34 48552081 48590914

Neighbor

gene id symbol gene type direction distance location
LOC110524291 LOC106573129 coding upstream 42437 48483885 ~ 48510535 (+)
LOC110524253 LOC106573262 coding upstream 262520 48256867 ~ 48289561 (+)
LOC118964788 NA coding upstream 388340 48147399 ~ 48163741 (+)
LOC110524199 LOC106573256 coding upstream 538735 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 573776 47949465 ~ 47978305 (+)
LOC110524313 LOC106573128 coding downstream 106 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 44581 48635495 ~ 48706569 (+)
LOC110532376 NA coding downstream 168125 48759039 ~ 48798504 (+)
LOC110524349 LOC106573123 coding downstream 213993 48804907 ~ 48815013 (+)
LOC110524405 LOC106573116 coding downstream 844848 49435762 ~ 49440232 (+)
G52395 NA non-coding upstream 11193 48530447 ~ 48540888 (+)
G52300 NA non-coding upstream 197567 48354149 ~ 48354514 (+)
G52292 NA non-coding upstream 208731 48343098 ~ 48343350 (+)
G52289 NA non-coding upstream 211239 48340260 ~ 48340842 (+)
G52390 NA non-coding downstream 7282 48598196 ~ 48598851 (+)
G52450 NA non-coding downstream 35684 48626598 ~ 48626797 (+)
G52546 st7 non-coding downstream 226834 48817748 ~ 48819992 (+)
G53252 NA non-coding downstream 474780 49065694 ~ 49079733 (+)
G53308 NA non-coding downstream 499206 49090120 ~ 49090352 (+)
G52324 NA other upstream 168824 48380542 ~ 48383257 (+)
G52080 NA other upstream 527123 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1293183 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1690617 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2559190 45992273 ~ 45992891 (+)
G53181 NA other downstream 302583 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1446660 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 2858908 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5075301 53632830 ~ 53705421 (+)
G59031 NA other downstream 5397226 53988140 ~ 53988597 (+)

Expression


Co-expression Network