LOC110524359 (capza2)


Basic Information

Item Value
gene id LOC110524359
gene name capza2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48901602 ~ 48958061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979340.1
TTAGTCCCTGATTGGTGAAGTGATGGTATATTTCATATGTACGTGCACACAAATCAAAATCAACTGTATGATGCTGCCGACAAGCTGCTGGTGCCGGAAGAAAAGATGGCGGATCATGAGGAGCAGTTATCTGATGAGGCGAAGGTACGCATAGCAGCGAACTTTGTCATCCACGCCCCACCAGGAGAGTTCAATGAAGTTTTCAATGATGTACGATTGCTGCTCAACAATGACAATCTTCTCAGGGAAGGCGCAGCGCATGCTTTTGCACAGTACAACGTGGACCAGTTTACTCCGGTGAAAGTAGAGCAATATGAAGACCAGgtctTAATCACAGAGCATGGAGACCTGGGCAACGGCAGGGTCCTGGACCCTAAAAACAAGATCTCCTTTAAGTTTGACCATCTGAGGAAGGAGGCCAGCGACCCACAGCCACACGATTTGGACGGAGCAATGGAGGGCTGGAGGAGTGCTGTGGACGGTGCTGTCCGGGCCTACGTCAAGGAGCACTACCCCAACGGAGTCTGCACGATTTACGGCAAAACCATTGATGGACATCAAACCATCATCGTGTGTATCGAGTGTCATCAGTTTCAACCAAAAAACTTTTGGAATGGACGTTGGAGGTCAGAGTGGAAATTCGCCATCGGATCCTCCACTACTCAAGTGGCCGGAATAATGAaaatccagGTTCATTACTATGAAGACGGCAACGTTCAGCTGGTCAGCCACAAAGAGGTCCAGGAATCCATGTCCATATCTAACGAAGCTGCAACTGCAAAGGAGTTCATCAAGATCATGGAGGCTGCGGAGAACGACTACCAGACCGCCATCAACGAGAATTACCAGACCATGTCGGACACTACCTTCAAAGCCTTACGCCGCCAGCTTCCTGTGACGCGCACCAAGATCGACTGGAACAAGATCCTGAGCTACAAGATCGGCAAGGAGATGCAGAACgcttaaaacaaacaaaacagaaaagCCCAGCATTGCATGGCTGGATTATTGTATCGTCTTTGTACAAATTAGATAAATGGGAGCGGAAAAATGTTTGGTCTAACGGACAAAATGTCAAACATTATTACACTTATTAAGATGTCTACTTTTATTAATGCTTTTATACAGACACAGTTAAAAAGATAATCTGTATAATACATAGATGATAAAGTAAATAATCATATTATTGGCCAAATAGGATGTGTTTCCTAGAAGAGGGGTGGTGGAGCTTCCTTCATATGCAAACCTGACAACCTGATATACATTTTGTGACAATGTTGTGTCAATATTTATGATTATGGTAGTTAGACCACACCGTTGACCCTAGAAAAACTATACCAATTGCAATGATGAAATTATTATTGAGGAATCTGTCTGTGTATACATTTAGATTAGGACTTTATTGGCTAATGCAGGAAAAGAATCCTGTACTGTAAGAGTCCTTCCGTTGTTTTCAATGGCTTGTACTTTTATGACATCAGAATGATGTCTTTTATACGAGCTGTTTGTCACCTCTGTCATTTTCGACCACTCGATGTTCTTCTTGGTCCCCTTATTGGTTCTCCCCACACCGTTTACCCCAGACCGTACGTTAAAATCTCCAGTTTGTGTGTCCGTCCAAGCTAAACTGCAGCTTAATTCATCGATTTCTGAATTGAACTTTCATGACACCGTGAAAGTATGGTTCCTATAATACCCTAACAAGCTCAATTATTAAAAACCCTTTAATTGCTACCAAATGTGGATTAAAATGTTCAAATCAATTTACAATTAAATTAAACAAGTATGTCTTAATTTGAATTAGGACAGACCTGACTGTATTATAACATGGCACATTGTAATATATATACCTGTATTAAACATCCTTGTCCTTCG

Function

symbol description
capza2 Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization and barbed-end actin filament capping. Located in extracellular exosome.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979340.1 True 1875 mRNA 0.42 10 48901602 48958061

Neighbor

gene id symbol gene type direction distance location
LOC110524343 LOC106573121 coding downstream 9115 48814805 ~ 48892487 (-)
LOC110532369 LOC100136364 coding downstream 153065 48706982 ~ 48748537 (-)
nup160 nup160 coding downstream 278186 48598178 ~ 48623416 (-)
LOC110524285 LOC106573130 coding downstream 437947 48440247 ~ 48463655 (-)
LOC110524273 LOC106573264 coding downstream 505221 48313665 ~ 48396381 (-)
LOC110532382 LOC106573120 coding upstream 13519 48971580 ~ 49044257 (-)
LOC110524368 LOC106573119 coding upstream 109428 49067489 ~ 49080714 (-)
LOC110524381 cav2 coding upstream 140491 49098552 ~ 49104735 (-)
LOC110524388 LOC106573117 coding upstream 222071 49180132 ~ 49208517 (-)
cbpa1 cbpa1 coding upstream 266651 49224712 ~ 49228631 (-)
G52974 NA non-coding downstream 300187 48497012 ~ 48601415 (-)
G53008 LOC106573126 non-coding downstream 343700 48555819 ~ 48557902 (-)
G52956 NA non-coding downstream 391124 48469168 ~ 48510478 (-)
G52985 LOC106573129 non-coding downstream 395511 48505510 ~ 48506091 (-)
G52973 LOC106573129 non-coding downstream 401975 48495624 ~ 48499627 (-)
G53524 NA non-coding upstream 154952 49113013 ~ 49113261 (-)
G53540 NA non-coding upstream 175880 49133941 ~ 49134182 (-)
G53541 NA non-coding upstream 176535 49134596 ~ 49135356 (-)
G53565 NA non-coding upstream 212111 49170172 ~ 49170575 (-)
G53537 NA non-coding upstream 219788 49177849 ~ 49202748 (-)
LOC110524264 LOC106573263 other downstream 597466 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 1340393 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 1523059 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 1611921 47288939 ~ 47289681 (-)
G51214 NA other downstream 1782569 47064774 ~ 47236625 (-)
G55408 NA other upstream 1453573 50411634 ~ 50412128 (-)
G55627 NA other upstream 1807302 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 1819686 50777716 ~ 50792069 (-)
G56372 NA other upstream 2442666 51400727 ~ 51412569 (-)

Expression


Co-expression Network