LOC110532382 (LOC106573120)


Basic Information

Item Value
gene id LOC110532382
gene name LOC106573120
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48971580 ~ 49044257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979352.1
CTTTATTGATAGCTAAGGGAGCATTTTTAACTTGACAACCAATAATTAAGAATAGAGTGAGTCAGTGGTCTTTCTTGGGTAAAGTCAGGTGGAATGTTGGATAGTTTTTCTAGTGAGAAGGAAAGGTGCTTCTATAACGAGTTATAGGATATTTTATTTACTTGTTATGGCACATATAATTATTAATTAACATACAATGTGGGAACTAAGCTAAAGACTGAACAATACTGAGAAAAGTTAGCGTTGCTATCGATGAAACCTGTAAACTCACCTGAGTGTAATCGCGCGCCTTCCAACCACCCGCAGTACAGTAGTCGAGAGGAGGAGCGCTGCGCGCTAAAGCGGACAAAAATACGCAGGGGGTTagaatgcctgtgtgtgtgacctaCACATCTACATTATATCCTGAGTCACACAGGTCCGCAGCTTGTGAATCGGAGTCAGAAAGAGTCGAACTTTGTCTGAGAAACGGGAAAACGGTTGTGATCGTTGTGAAAAGAAAGGGAAAACGTCTGATAGAGTATTCAAAGTCAAACATCTTCTGCGCATCAATTTGTTCTTTAGCCGTCAAAACGTTGATGCATGCGTGAGGAATCCTGAGTTTTGTGGGCTACTATGATTTGAAAGAAGAAACCAAAACATAACTGAGATAGTTGCCTAACTGACAGGATGAAGAATATCTGCTTGTTGGACATCGCTCACATTGTGATCATCCGCTGGGCTCTTTGTTTCTCTGGGTCCGTGGTGATGGGTCAGTGTAATGAGGCAGCTGAGAACTCCAAGCTCAATCTGTCTGTGACCTACGACCTGCCCACCTTTGAGGCCATCTCCGCCATTCAGAACCTGGTAACCTTCGAGGGGACCGTCTACATTGGTGCCGTGAACCGAATCTACGCACTGTCAGAGAACCTGACCAAGCTGTCGGAGTACCAGACCGGGCCCGTGTCTGAAGGCGCTGTCAGAAGGCGGTGTGGTCCTAGTTGTCAGGATGGAGCCTGCGGTAAGACCAACGCTGTGGTGGACAACTATAACATGGCCCTGCTGGTGGAGCGTTATTATGACGATGAGCTGTTCAGCTGCGGCTCAGCGGACGCCGGTGTCTGCCGTCGCCACCTGCTGGAGAGAAAGAAGGTGGACAGGGAGGTACAGTGCATGTATTCACCCAAGACAGATCAAAGAGGACGGCACGGCTGCCCCGACTGCGTGACTAGCCCCCTGGGGTCCCGTGTGCTCAACGTGGAGAGCGGAGGCGTGGTGCGATTCTTCGTAGGAAACTCGGAGATCCCCGGAAGCCCATCCCGGATGATCTCCAGCCCCCAGGCCCAGCAGCCACAACACCACACCATCTCAGTGCGTCAGATGAAAGAAACCCAAGATGGTTTCCGCTTCTTCTCCGACCAGTCCTACATGAATTTGGCCCCGGGCCTCCGCGGCGACCACCACCTCCAGTATGTCTATTCCTTCCAGAGCGGCTACCACGCCTACTTCCTCACCGTGCAGCGCGAGGGCCACAGCTCGCAGGTTTACCACACCCGCATCGTCCGCATGTGCGGCACGGACCCGGAGCTGCGGCGCTACGTAGAGATGCCATTCGAGTGCATCCTGACGGAGAGGAGGAGGCGGCGGCGCTCAGCCAGCATCGAGGTGTTTAATGTCCTCCAGGCAGCCCACGTGGCCAAGGCGGGCCGCGAGCTGAGGCAGGAGATGGGGCTGAAGGAAGGGGAGGACGTGCTGTTCGCCGCCTTTGCCCGGTCCAAGCCAGACTCCCCGGAACCCAGTGCAAACTCGGCCGTTTGCGTCATCTCACTGGCAGACGTCAACAACTTCTTCAAGGACTTCATCCAGAAGTGCCACACCAAGCAGCCGTACCATTTCACCGGCTCCGAGGAGAAGCGCTGCTACAACGGGAGTTCCTCAGACGACTCGTTTGGCTGTGGGAAGCATGAGGAGGGCTACCGTCTGGAGGTGACCAGTACCATGGCCAGACTAGACTACTTCAGCGGGCAGTTCAGCAACGTCCTGCTCACCTCCATTGCCGTGGCGACTGCACAGGAGCAGACCGTGGCCAGCCTGGGCACCGCAGACGGACGCCTCATACAGGTGGTGGTCTCCCGTTCCAAACGCAGCACGCCCCACGTGGACTTCCGCCTGGATGACTCGCGCCCCGTGTCCCCCGAGGTGGCTCTCCTGTCCCCCCAGCGCCACGACGGCTCCCCCCAGCGCAGCCAGGACGGCTCACTCTTGTTGGTGACAGGAAATAAGATCACCAAGGTCCCTCTGATTGGTCCTGGCTGTGAGCAACAGTGGATGTGTAGTTCCTGCCTGCTGGTGCCAGGTTTTATGGGATGTGGCTGGTGTGACGGCCGCTGCACCAGGGCAGCCCAGTGTCACCCAGCGTCCCTCTGGACCCAGGACTCCTGCCCTCCCGTCATCACCACGatcTCCCCAGCCAACGGCCCCCTGGGAGGGAGCACCAAGGTGACGGTGTGTGGGAGGAACTTTGGCTTCAACAAGACGGAGAGGTTTGACCACACACTCATCAGCCTGGACGTGGCCGGGGCACCCTGCAAACTACTGAAACGAGAGAGCAACAGCAACAGgttgGTGTGTGTTCCGGCGTCTCCTGTGAACTCGTCTCTGGCTAGTAGTGTGGTGAAGGTCCACAGTGGCAAGGAGATGTCCCAAACACAGGGATTCACCTTTGTGAACCCAGTAATCAGGGAGATCTTCCCTGCATTCGGTCCTAAGTCAGGAGGCACCGTGCTCACCATCAGAGGCTCTTTCTTAGACAGTGGCAACTCCAGACAGGTCACTGTTGGGAATGCCACCTGTGAGATCCTGAGTGTGTCAGTTACCATGCTGATGTGCAGGACCCCTCCCCAGTCGGCCCCGTCCCTCCAGGCGGTGTATGTGAGGGTGGACTCTGTGGTCCGAGAGGCCCCTGTACTCTTCGCCTACAACGAAGACCCTCTCATCTCCAGCATCCAGCCCACACGGTCCTTCATCAGCGGAGGCAGCACTGTGGTGGCCCAGGGCTTCTACCTTCACTCGGCTTCCCCGCCTCAGATGGTGCTCATCCCCACAGCCCAGGACGGCAAGGTGTTCACTGTGAGCTGTACGCAGGGTGAGGACAGGCTGACCATCCTGTGTACCACTCCCTCCCTGAAGGACCTGGGCCTGCAGCCTCCTGTGGTCACCAAGGTGGCGTTCGTCCTGGATGGTTTCACCGCGCCCCAGTTTGACCTGCTGTATGTGGAGGATCCTCGCTTCGAGGACTTCCAGAGACCCACCGTCACATCCAAAGGCAACAAGAGCATCCTGGAGATTAAGGTGCCAGGTCGTGTGGATGTGGAGGCGATGAAGGGGGAGGTGCTGAAGGTGTCTAACAGGACCTGTGAGAGTGTGACTGTGGTGGGTAACACCCTGGAGTGTACTGTCCCCATGGAGTTACGGGATGCCACCAATGAACTGGAGGTGGAGTGGCGTCAGGCATCGTCTTCAGTGAGTCTGGGAAGAGTGATGTTGGCTCATGAACAGGACTACAGAGGGCTGAtagctggctgtgtgtgtgtcagcctgtttCTTCTTCTGCTGCTCGCTCTATTCATCTGGAAAAGGAGGAACAAGCACATTGACGATCTGGCTGAGGGTAAGGTTTGGTATGATGGCCGAGCTCACATTCAGCACTTGGACATGTTGGCAAACGCACGAAGCGTCAGCCCTACTAACGAAATGGTGTCCCACGAGTCGGTGGACTATAGAACCACCCTGCTGGAGGACCAGGGCGTGGAGAGGCCAGAGTCGTGCAGGGGGGCTCCCCCCATCTACGGGGGCCATGGGGAACTCCTGTCCCCCAGGCTGGGGCTGGGTGGCATGGGGATGGGGATAGGtctgggggtggagggggagctGGTGTCCCCTCTCCTGTCGGCCTCGGTCCACATCGACACGTCCCAGCTGCACCCTGACCTGCTGAAGGAGGTTCAACATGTGGTCATCGCTAGGGAACACCTGCTGTTACACCTAAGCCAGGTCATAGGCAGAGGTCACTTTGGATGTGTGTTCCATGGGACCTTGTTAGAGGCTGACGGTCAGAAACAGCACTGTGCCATCAAGTCCCTCAACCGGATCACTGACCTGGAGGAGGTGTCTCAGTTCCTGAAGGAGGGGATCATCATGAAGGACTTCAGCCACCCCAACGTGCTGTCTCTACTAGGGATCTGTCTGCCCACTGAGGGCTCTCCTCTGGTGGTGCTGCCGTACATGAAGCACGGAGACCTCAGGAACTTCATACGGGAAGAGACACatAACCCCACAGTGAAGGACCTGATGGGCTTTGGTCTGCAGGTGGCCCGGGGCATGGAGTATCTGGCCAGCAAGAAGTTTGTCCACAGAGACCTAGCCGCAAGGAACTGCATgctGGATGAAAGCTACACAGTGAAGGTGGCAGACTTTGGCCTGGCCAGGGATGTGTATGATAAGGAGTACTACAGCATCCACAACAAGAGTGGAGTCAAActacctgtcaagtggatggccCTGGAGAGCCTGCAGACACACAAGTTCACCCCAAAGTCAGATGTGTGGTCGTTTGGCGTGTTGCTATGGGAACTGATGACCCGGGGAGCCCCGCCGTATTCGGACGTCAACTCTTTCGACATCACTGTGTTCCTACTGCAAGGGAGACGGCTGCTGCAGCCAGAGTTCTGCCCTGACCCACTGTATAACGTGATGGTCGAGTGCTGGCACCCCAAGTCGGAGAGGAGGCCCACCTTCTCAGAGCTGGTATCCCTTATCAACGGCATCTTCTCCAGCTTCAGCGGAGAGCACTACATCCTTCTCAACACCACCTATGTCAACATAGACAAGATGAGCCCCtacccccctctcatctcctcatcctcctcttcctcctccacccttcAGGGCCACCCCCTGGAGCGAGACTGCTGcacatgagagagagggagtgatggagagaaagaaagagagagagagagagggagagatgaaagaaaaatagttaaggagaaaaggagagggcaTGGGGAGAGATTGAAGACAAGGGGGTAAAAGGAGGGTAGGAAAAGAATGAGTTTGAcagagtaagaaagagagagaaaagagtgggCTTGAGGCGGCGAAGCCGTTGGGTCGCTTGGGAACTGTatgtgactgacagacagacactggacaAACTCTGTGTACGCTGGCTGAGAAAAGACAGTTTAAGGACACTGACACGTGCCGTGCCTACTTCAcgtgtgtgtaatgtatgtatACTGACCAATGACCAACCAAACAAACATCACTGTACGCCTGAGGCCTGTATGAACTGTTAGGTCGATCTTGGCCTCCCTCTGCTCTTTAACCTAGAACTTGCTCTAGACCCTCCCATGACCTTTTACCCTGGTATGCCCTTGGAGCCTGACTTCAGGAGGTCAGGCTTCTCGTCTCTCTCTACCACATACAATTTGGAGACATAGGAGAACCTTTTCAATGAACAAAGCCTATAGAATTCTATAGAAGCACATTGTGTGTATCAAGTACAAGTGACTCACCCAACATTTCAACAACTCCCGTGCCAAAGAGGGACCGGATGATTTTTGGAGACATTTCCGCTTGTTAATGGGTGGCATGTGTATGGCGATATGGCGAAGGGCCGGGCTCCAGGTTTTTTTTCCCCTCGCCATAAAATTATTTACACCATCACCCGCACTGCCACTGAATTcccctctcttcccacctctcctcACATGCCTCCTCGCATACATCCCTAAGCACTAGGACTGAATGAAGAAAGTCCCAGCTCCAGCCTCCAGGGGATGTTCTCACTAACCGAGGTGGCGGTGCAGATTGGCTGGCAGAAGGAACAATTTGCTGCCCGTGTGCAGTGGGCTACACTGGATACTTCTTTATGTGTGTAATTATCTTTGACGATTCTCTTTTGATGTGCTTCTTTCAAAACATCTCGCTGCTTCATTGCTGTGAGTGACTCACCTTTTAGGAATCTGCAGACGTTTCCCAGttgaaatgtgtattttttttttgcctcGGTTGGACTTGAACCGGCCCGTCATAATGTCTACATAGCATGTGTCATAGCAGTTCATGCAAGCTCAGCCTGAAAACAACTGACATAATCATGTTTTAGACTTCAGAGAGTCAAGTGGGGGGAAACTGGAGACACGTTGGAACATTTGATGTTTTTTTGGGCATCATAGTACTACGTCAGTTGGAACAAGTGTTTTTACTGTCAATCATGACTTCATCGCGGCGTTGTTACACACTGCTATGTCGACATTTTGAAAGGCCACTTCAAGTTAAAACGTGACCATTTTGCCTCTCCTGTGTGAAGCGTTTGTCTTTTTGTTACTATGGCTGCTGTTCTGTTTTAAATGATCAGGCCAGCAATGGACAGATATGAATGTTTGCTCAAATAAATGTTTAAAGAACTGTACTATATTTTTTATAATGCCTTTTATTATGAAAATGAGCCTAAATAAATGGTCGGCCCAATAGAATAATGCCCGAAGTACAAACAACCGATACTGTACAGTCATTGAACAACTGGAGCTAGCAAGTTCACGTCCTTAACTATTAGACTGTTCTAGATGTTCCTATTGGTAACTAAATGGCTTGTAAATCCATGACTTTTGTCCATTAATATGCCATTGAGCTCACTGTCAGTGCAGTGTGAGCATATATATGAAGCACTGTTTAGGGATCGTCTATGAAAATAGTGATGGTACATATGTTGTTACTATGTTATGTCATCTGACTGACTCGGTGTAATAAAACTATATTATCAGTGTGGACATGTCAAA
>TU59630
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagattatctAGAAAGTAGTTGTACATCTCActcactgttctcctctcctttctgtgtgtgtgtgttgtgtgtgcgtaGTGGCGTCAGGCATCGTCTTCAGTGAGTCTGGGAAGAGTGATGTTGGCTCATGAACAGGACTACAGAGGGCTGAtagctggctgtgtgtgtgtcagcctgtttCTTCTTCTGCTGCTCGCTCTATTCATCTGGAAAAGGAGGAACAAGCACATTGACGATCTGGCTGAGGGTAAGGTTTGGTATGATGGCCGAGCTCACATTCAGCACTTGGACATGTTGGCAAACGCACGAAGCGTCAGCCCTACTAACGAAATGGTGTCCCACGAGTCGGTGGACTATAGAACCACCCTGCTGGAGGACCAGGGCGTGGAGAGGCCAGAGTCGTGCAGGGGGGCTCCCCCCATCTACGGGGGCCATGGGGA

Function

NR:

description
PREDICTED: hepatocyte growth factor receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979352.1 False 6827 mRNA 0.53 21 48971580 49044257
TU59630 True 470 TUCP 0.50 3 48984185 48985917

Neighbor

gene id symbol gene type direction distance location
LOC110524359 capza2 coding downstream 13519 48901602 ~ 48958061 (-)
LOC110524343 LOC106573121 coding downstream 79093 48814805 ~ 48892487 (-)
LOC110532369 LOC100136364 coding downstream 223043 48706982 ~ 48748537 (-)
nup160 nup160 coding downstream 348164 48598178 ~ 48623416 (-)
LOC110524285 LOC106573130 coding downstream 507925 48440247 ~ 48463655 (-)
LOC110524368 LOC106573119 coding upstream 23232 49067489 ~ 49080714 (-)
LOC110524381 cav2 coding upstream 54295 49098552 ~ 49104735 (-)
LOC110524388 LOC106573117 coding upstream 135875 49180132 ~ 49208517 (-)
cbpa1 cbpa1 coding upstream 180455 49224712 ~ 49228631 (-)
LOC110532387 tmtc3 coding upstream 719738 49763995 ~ 49822972 (-)
G52974 NA non-coding downstream 370165 48497012 ~ 48601415 (-)
G53008 LOC106573126 non-coding downstream 413678 48555819 ~ 48557902 (-)
G52956 NA non-coding downstream 461102 48469168 ~ 48510478 (-)
G52985 LOC106573129 non-coding downstream 465489 48505510 ~ 48506091 (-)
G52973 LOC106573129 non-coding downstream 471953 48495624 ~ 48499627 (-)
G53524 NA non-coding upstream 68756 49113013 ~ 49113261 (-)
G53540 NA non-coding upstream 89684 49133941 ~ 49134182 (-)
G53541 NA non-coding upstream 90339 49134596 ~ 49135356 (-)
G53565 NA non-coding upstream 125915 49170172 ~ 49170575 (-)
G53537 NA non-coding upstream 133592 49177849 ~ 49202748 (-)
LOC110524264 LOC106573263 other downstream 667444 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 1410371 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 1593037 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 1681899 47288939 ~ 47289681 (-)
G51214 NA other downstream 1852547 47064774 ~ 47236625 (-)
G55408 NA other upstream 1367377 50411634 ~ 50412128 (-)
G55627 NA other upstream 1721106 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 1733490 50777716 ~ 50792069 (-)
G56372 NA other upstream 2356470 51400727 ~ 51412569 (-)
G56764 NA other upstream 2702360 51746617 ~ 51747220 (-)

Expression


Co-expression Network