Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524381 |
| gene name | cav2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 49098552 ~ 49104735 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cav2 | Predicted to enable molecular adaptor activity and protein kinase binding activity. Predicted to be involved in several processes, including caveola assembly; insulin receptor signaling pathway; and negative regulation of endothelial cell proliferation. Predicted to be located in Golgi membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and perinuclear region of cytoplasm. Predicted to be integral component of plasma membrane. Predicted to colocalize with caveola; focal adhesion; and sarcolemma. Human ortholog(s) of this gene implicated in low tension glaucoma and primary open angle glaucoma. Orthologous to human CAV2 (caveolin 2). |
| description |
|---|
| caveolin-2 |
| id | name | namespace |
|---|---|---|
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0005901 | caveola | cellular_component |
| id | description |
|---|---|
| K12958 | CAV2; caveolin 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603973.2 | True | 2244 | mRNA | 0.41 | 3 | 49098552 | 49104735 |
49,097,000
49,098,000
49,099,000
49,100,000
49,101,000
49,102,000
49,103,000
49,104,000
49,105,000
49,105,000
49,106,000
49,107,000
49,108,000
49,109,000
49,110,000
49,111,000
49,112,000
49,113,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110524368 | LOC106573119 | coding | downstream | 17838 | 49067489 ~ 49080714 (-) |
| LOC110532382 | LOC106573120 | coding | downstream | 54295 | 48971580 ~ 49044257 (-) |
| LOC110524359 | capza2 | coding | downstream | 140491 | 48901602 ~ 48958061 (-) |
| LOC110524343 | LOC106573121 | coding | downstream | 206065 | 48814805 ~ 48892487 (-) |
| LOC110532369 | LOC100136364 | coding | downstream | 350015 | 48706982 ~ 48748537 (-) |
| LOC110524388 | LOC106573117 | coding | upstream | 75397 | 49180132 ~ 49208517 (-) |
| cbpa1 | cbpa1 | coding | upstream | 119977 | 49224712 ~ 49228631 (-) |
| LOC110532387 | tmtc3 | coding | upstream | 659260 | 49763995 ~ 49822972 (-) |
| LOC110524413 | LOC106573141 | coding | upstream | 743643 | 49848378 ~ 49876492 (-) |
| LOC110524441 | LOC106573156 | coding | upstream | 1155669 | 50260404 ~ 50270301 (-) |
| G52974 | NA | non-coding | downstream | 497137 | 48497012 ~ 48601415 (-) |
| G53008 | LOC106573126 | non-coding | downstream | 540650 | 48555819 ~ 48557902 (-) |
| G52956 | NA | non-coding | downstream | 588074 | 48469168 ~ 48510478 (-) |
| G52985 | LOC106573129 | non-coding | downstream | 592461 | 48505510 ~ 48506091 (-) |
| G52973 | LOC106573129 | non-coding | downstream | 598925 | 48495624 ~ 48499627 (-) |
| G53524 | NA | non-coding | upstream | 8278 | 49113013 ~ 49113261 (-) |
| G53540 | NA | non-coding | upstream | 29206 | 49133941 ~ 49134182 (-) |
| G53541 | NA | non-coding | upstream | 29861 | 49134596 ~ 49135356 (-) |
| G53565 | NA | non-coding | upstream | 65437 | 49170172 ~ 49170575 (-) |
| G53537 | NA | non-coding | upstream | 73114 | 49177849 ~ 49202748 (-) |
| LOC110524264 | LOC106573263 | other | downstream | 794416 | 48291626 ~ 48304829 (-) |
| LOC110524104 | LOC106573248 | other | downstream | 1537343 | 47541224 ~ 47561223 (-) |
| G51649 | LOC106573246 | other | downstream | 1720009 | 47377641 ~ 47378543 (-) |
| G51285 | LOC106561952 | other | downstream | 1808871 | 47288939 ~ 47289681 (-) |
| G55408 | NA | other | upstream | 1306899 | 50411634 ~ 50412128 (-) |
| G55627 | NA | other | upstream | 1660628 | 50765363 ~ 50767431 (-) |
| LOC110524514 | borcs5 | other | upstream | 1673012 | 50777716 ~ 50792069 (-) |
| G56372 | NA | other | upstream | 2295992 | 51400727 ~ 51412569 (-) |
| G56764 | NA | other | upstream | 2641882 | 51746617 ~ 51747220 (-) |
