LOC110524413 (LOC106573141)


Basic Information

Item Value
gene id LOC110524413
gene name LOC106573141
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49848378 ~ 49876492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979394.1
ATGTCACATTCAGAACAACTGGGATCTCGGAAAACTCCGACTTCTGACTTCAATCGGTTcacgacaactgggaactcgaaaaATAAAGGTCGAACCATAACGTCAGTGATCTTCGTGGTCGGCAAAACATATTTCAAGAAAGAAGTCACAGTTCCCGAGTTTGAGCTGTTTTTTTCCCCTCCGAGTTCTGTTGTTTTGGACGCACTGACGTCGGAAatatccgagttcccagttgtcttgaacgcatcATTATTCTCCAGCACGAAGCAGCAGACAGTATacgtctagctagctagctacttttcgTACCTGATATCGCTGGCTTTCGCACGCTTCCAAATTAGCTTTTATTTTCAAGATTTTACATTTCTTCTTTGGTGGCCACCCAAACAATAAAACTGAAGTTCTTTTAGTGAAGCACTGTTTTCCCCACCCCTCCCTGTTATTATTATTCTTTTAAAGATTCATCTTTGTCAAGCCGCCAAAGTGGAGAGTGTGATTGCAGTAGGGGGTGCTTCTCGTTTCAGTGCTTCTTCGGGGGGAGGTGTTGGTAGGGGTGCACCTCAGCACTATCCCAAGACTGTCGGCAACAGCGAGTTCCTGGGGAAAACCCCCGGGCACAGCGCTCCGAAATGGGTTCCTTCACGAAGCACTAGACGAGATGCCAACTCCAGCAACGAAAAAGAGCGACACGATGCAATCTTTAGGAAAGTGAGAGGCATACTCAACAAGCTCACGCCTGAGAAGTTTGACAAGCTATGCCTTGAGCTCCTGAATGTGGGCGTAGATACAAAACTCGTCCTTAAAGCAATCATCTTGCTGATTGTAGACAAAGCCCTAGAAGAGCCGAAGTATAGCTCACTCTATGCGCAGCTATGTCTGCGTTTGGCAGAGGACGCACCAAACTTTGATGGCCCTTCGCCCGAGATCCAAACATCCCAAAAGCAGAGCACTACCTTCAGAAGACTTCTAATTTCCAAGCTTCAAGATGAATTTGAAAACCGCAGCAGAAATGTTGAAATCTATGACAAACATGACAACCCTCTTActtctgaggaggaggagcagcgtgCCATTGCCAAGATCAAGATGCTTGGCAACATTAAATTCATCTCGGAACTTGGCAAACTCGACCTCATCCATGAATCTATCCTTCATAAGTGCATCAAAACACTTTTGGAAAAGAAGAAGAGAGTCCAACTCAAGGATATGGGGGAGGATTTGGAGTGCCTCTGTCAGATAATGAGAACAGTGGGGCCTAGACTCGACCATGAAAAAGCTAAGTCTTTAATGGACCAGTACTTTGGCCGTATGTTATCCTTAATGAACAACAAGGAATTGCCCGCCAGGATCCGCTTCCTGCTGCAGGACACGGTAGAGCTGCGAGACAACAACTGGGTCCCCCGCAAAGCTTTCATCGACAACGGACCAAAGACCATAAACCAGATCCGTCAAGAGGCAGTGAAAGATTTGGGTGTTTTCATCCCAGCGACCATGGCTCAGGGAATGAGGATGGACTTCTTCCTGGAAGGCCCTTTTATGCCAAACAGGATGAAAATGGAGACTCTCGGGGGACTGGCTGACATGTTTGGACAAATGCCAGGTGGTGGGATAGGGACGGGCCCGGGGGTCATTCAGGACAGGTTCTCTCCCACTCTGGGACGTCATCGCTCCAACCCGCTCTTCAACGTCAACGGACATAACGGCCACAACACCTCCCCCCAACCACAGTCTCCGTTTGAAATTGGAGCCAACAAGTCTTTTATCAAGTCCAACCAGGTTCAGAATCAGCATTTCCAGAACCAGAACCACCAGAGCCAGCAACAGCAGGTCCAGTCCAACAAGGACATGCCTCCACGTTTCAGCAAGAAGGGACAACTCAACCTAGAAGAGATCAGCCTGAGACCAGCTCAGTCGTTCCTCCTGAATAAGAACCAGGTTCCCAAGCTGCAGCCCCAAATCCCCACCATGATCCCCCCCAGTGCCCAGCCCCCCCGCACCAACACCCCTCCATTGGGACAGTCTCCACAGCTCGGCCTCAAAAGCAACCCTCCTCACATTCATGAGAAACCTCATAAGACCAGCAAGAAACCACCGCCGGCTAGGGAGGAGCTGCTGAAAATGACAGAGACTGTTGTAACGGAATACCTGAACAGCAAAAACATTGATGATGCTGTGAACGGTGTCAGAGAGATGAAGGCTCCCAAGCACTTCCTGCCGGAGATGCTGAGTAAGATCATTGTGGTATCGCTGGACCGGTCAGATGAGGATAAGGAGCATGCCAGCACCCTCATACACACGCTACGCACAGAAGGCCTCGTTACCGGGGATAACTTCATGCAGGCTTTCCTCAATGTGCTTGACCAGTGCCCTAAGATCGAGGTGGACGTGCCGCTTGTGAAATCCTACCTAGCCCAGTTTGCAGCCCTGGCCCTCATATCTGAGCTGGTGAGCGTGTCTGAGCTGGCCCACCCTCTGGAGAATGGAACCCACTTCCCCCTCTTCCTGCTCTGTCTGCAGCAGACTGCCAAGCTCACGGACAAGGAGTGGCTCACTGACCTCTTCCAACAGAGCAAGGTCAACATGCAAAAGATGCTACCCGAGATTGACCAGAACAAGGACCGCATGTTGGAGATCCTGGAGGGTAAAGGCCTGAGCttcctgttccccctgttgaAGCTTGAGAAGGACCTGCTGCTGCAGATCAAGGCAGACCCCTCACCGCAGGCCATCTACAAGTGGATCAAAGACAACATCTCCCCCAAGCTCCACACCGACAAGGGTTTTGTCAACATCCTCATGACCAGttTCTTGCAGTACATctcaggggagctgtgttgtgtggaggaggaggagggcagtgGTGGAGAGGAGCAGGCGGTGGGGCCCTCCAAAGAGCAGCTGGACCAAGAGAAGCAGCTGCTGCTGGCCTTCAAACCCGTCATGCAGAAGTTCCTACACGACCAACCCCAGCTGCAGGTCTCAGCCCTGTACGCCCTGCAGGTGCACTGCCATGCCAGCCACTTTCCCAGAGgTATGCTGCTGCGCTACTATGTCCACTTCTACGATATGGAGATCATTGAAGAAGAAGCCTTCCTTGCATGGAAAGAAGATATTACCCAAGAATTCCCTGGAAAGGGAAAAGCTTTATTCCAGGTCAACCAGTGGCTAACCTGGCTGGAAACAGCTGAGGAAGAGGAGTCAGAAGAAGAGGCTGACTGAGAAACAAACCAGAACTGTCAGGCACCATAGAGTAGAGAAACATACCTTGACATACAGTACAGCTATCTATCTATTACCACCCTAATCTCCCCTTTAACTAACCACTGCTAGAGACTGCTTATGTCCTGCAATAATTAGCCAAGCATGTTATCATGGCATAGTAGATAACCATCGAGCTCTGTATAGGCACTGAAgcctttcacctttattttaatGGTTGATTTGTTTTGGGTCCCTGTCCCGTTTCTGCATTATGAATTTAATGTAGCCTATGGACTGTCTCAAACCACATCTGTAATTTTCTTGTTTTGCTCCTACTGTAACCACGGAGTTAGTTTTGCCACAATAACTGACTGACAAGTATTGCATTAACACTATTTGATATGATTTGTTATCCCCTTTAAAGAAAATGTTTATTTGACACCTGTTTAGGGTCTTTTCCCTAAAGGGCATGCAAAATATGTCCAATCTAGAGAGTAAGTCCATGGTCTTAGTCAACTGAATCTTGCCTAAAATCTTTGTTTTAAACCAAAGATCTCTTCGAATGCCCTGTTGCTGATAAAGGAGCATGTTGCATTTTGTTTATGGAAATTCTATTCTTCCCACGCAAGGCTGTAGTGGTTGCAATACTCATTCTTTAATTGTTACATAAACTGTAAGTTAATCATTGGTGTGCTGCCGTAACGTTTCAAAAGTTGCCTTTGTTTTTACCTCTTAGATGGGCTTTGTGTTTCATGTTGGGATACAGAATATCCTTTTTGTTTTTAGAGAAATGCCTATACAAGAAAGCCCAGCCCAATGCAGAAATGTTGATATAAATATCCTGGCCTACTAACACAATACAACCCCTGTATTGGACTTCCAATGAAGCTCGATCTGGTTTACTAGTGTGAACGTCTAAGAACGTAACAAAAGTCaccttttttaaaattaattgGATAACTTCTTACCTCCCCCTTTTGCCTGTAAAGTTTGTCAAAGGTGGGGGTACAGGAATATATTTTCCCCAGCATATTGAGTTTATACCGATATGTTTAAGTGAATTTTATACTGTCTTTTAATTGGCGAATAAAAAAAAGCTTGTGAGAAAGTTGTATAGCGCATAAAGGCTTACCATACTGAACTTAAATCTTAATGAAGTCATGAAATAAAATCTTCACTTTGCCCAACAAGATTAGCCAATGTGCTCACAAACCATGTGTATGTAGAAAGCAATGGATTTTGATCATGTTGTATTCAAGTGATGAGTATTGTGCACTGATATTGCTTAACCGTCAATAAAGTCCAATACTTGAGCACTGA

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like, partial

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979394.1 True 4524 mRNA 0.47 21 49848378 49876492

Neighbor

gene id symbol gene type direction distance location
LOC110532387 tmtc3 coding downstream 25406 49763995 ~ 49822972 (-)
cbpa1 cbpa1 coding downstream 619747 49224712 ~ 49228631 (-)
LOC110524388 LOC106573117 coding downstream 639861 49180132 ~ 49208517 (-)
LOC110524381 cav2 coding downstream 743643 49098552 ~ 49104735 (-)
LOC110524368 LOC106573119 coding downstream 767664 49067489 ~ 49080714 (-)
LOC110524441 LOC106573156 coding upstream 383912 50260404 ~ 50270301 (-)
LOC110524445 LOC106573110 coding upstream 491074 50367566 ~ 50374531 (-)
LOC110524488 LOC106573155 coding upstream 842144 50718636 ~ 50752172 (-)
LOC110524514 borcs5 coding upstream 901224 50777716 ~ 50792069 (-)
LOC110532393 ckap5 coding upstream 932221 50808713 ~ 50850668 (-)
G54411 NA non-coding downstream 7382 49827425 ~ 49840996 (-)
G54367 NA non-coding downstream 142167 49701222 ~ 49706211 (-)
G54171 NA non-coding downstream 425791 49422321 ~ 49422587 (-)
G54164 NA non-coding downstream 434180 49413980 ~ 49414198 (-)
G54160 NA non-coding downstream 437415 49410646 ~ 49410963 (-)
G54513 NA non-coding upstream 72681 49949173 ~ 49949911 (-)
G54528 NA non-coding upstream 86150 49962642 ~ 49962841 (-)
G54536 NA non-coding upstream 91151 49967643 ~ 49968548 (-)
G54572 NA non-coding upstream 110703 49987195 ~ 49987566 (-)
G54590 NA non-coding upstream 121693 49998185 ~ 49998403 (-)
LOC110532382 LOC106573120 other downstream 862461 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 1544242 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 2287169 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 2469835 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 2558697 47288939 ~ 47289681 (-)
G55408 NA other upstream 535142 50411634 ~ 50412128 (-)
G55627 NA other upstream 888871 50765363 ~ 50767431 (-)
G56372 NA other upstream 1524235 51400727 ~ 51412569 (-)
G56764 NA other upstream 1870125 51746617 ~ 51747220 (-)

Expression


Co-expression Network