LOC118964841


Basic Information

Item Value
gene id LOC118964841
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50037523 ~ 50184257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052021.1
AGCGTCACTATAGTCCACACGCCGCCTTCAGTTTATTCGCAGTCGAAGGGAGGAGAGCTAGATAATACGCAccagtgtattgtagtggtgCTAGTATAGCAGACTATTTGGGTTTCAGACCTTGTATAATTCTCGAATTCCTCCTGAGGGATAGAGAATATTTGGACACTGGGAACACGTCGGCGCACCTAGCCTACGGCAGCAATGAATTCACGCGGTTTCCGGTTCTTCGTCGCTATCTCTGAGCTGAAGAAGACTGTAACAGTATGTATAACGTTAGTAGCTAACTAGAGCAGTCGACTGTTTTCATACCTGGGTTTGCAGAAAAGTAAAGCATGACAACGTCCTCCGCGGGGTAAAACTACGACTGACTATTATGTTATGAGatgaaatcctgcgaCCAGTGAGGTCTGACCGCCCGAGAACCTGCCCATTTGACCCCATCCCCTCCACCCTTCTCCAGActatctctggagaccttctcccatacCTCACTTCCTTCATCAACTCATTCCTGACCACTTGCtgcgtcccctctgacttcaaaatggcccgcgtcgctcccctcctcaagaaaccagcACATGACTCATCTGACGTCAAAAACTATAGACCGatctatctgcTGCCATCGAtaccgtgaaccatcagatcctcctctccaccctctcagggctgggatctcaggctctgcacactatTATATTGCATCCAACCTGGCAGaccgctcctaccaggtggcaacacgcatctctgcgtgcctggcagatatctcaaattggatgtcggcccaccacctcaagctcaaacATGACAAGATGGAGCTGCTCTTCCTTTCAGTAAGGCCTGCACGCTCAAAGACCTATCCATCACGGTTGACCACTCCACAGTGTCACCCTCCCAGAATGCAAATAACCTTGGCTTGACCCTGGACAACcgtcattctctgcaaacatcacaGCAGCAACTCACTCCTGCAGGTTCAGGCTCTACAACATCCATGGAATATGACCCTGAATAATACAGGAAACGGTGCATGTTGTAATCCAGGGACTTGTCATCTCCCATATGGACTAC
>TU60887
GGAGAGCTAGATAATACGCAccagtgtattgtagtggtgCTAGTATAGCAGACTATTTGGGTTTCAGACCTTGTATAATTCTCGAATTCCTCCTGAGGGATAGAGAATATTTGGACACTGGGAACACGTCGGCGCACCTAGCCTACGGCAGCAATGAATTCACGCGGTTTCCGGTTCTTCGTCGCTATCTCTGAGCTGAAGAAGACTGTAACAGTATGTATAACGTTAGTAGCTAACTAGAGCAGTCGACTGTTTTCATACCTGGGTTTGCAGAAAAGTAAAGCATGACAACGTCCTCCGCGGGGTAAAACTACGACTGACTATTATGTTATGAGAAACAACTGAGGAGCATCTGTTAGTGGATCCAGTCCATGTCAACCTTCAGAACTCCTCCCAAAAAGACATCTGACTTCTGCTGAAAGgctggtggtggctggtcccctgcaggaaggtgaggtgcctgaggACCCGCCGCCGACT
>TU60888
GGAGAGCTAGATAATACGCAccagtgtattgtagtggtgCTAGTATAGCAGACTATTTGGGTTTCAGACCTTGTATAATTCTCGAATTCCTCCTGAGGGATAGAGAATATTTGGACACTGGGAACACGTCGGCGCACCTAGCCTACGGCAGCAATGAATTCACGCGGTTTCCGGTTCTTCGTCGCTATCTCTGAGCTGAAGAAGACTGTAACAGTATGTATAACGTTAGTAGCTAACTAGAGCAGTCGACTGTTTTCATACCTGGGTTTGCAGAAAAGTAAAGCATGACAACGTCCTCCGCGGGGTAAAACTACGACTGACTATTATGTTATGAGatgaaatcctgcgaCCAGTGAGGTCTGACCGCCCGAGAACCTGCCCATTTGACCCCATCCCCTCCACCCTTCTCCAGActatctctggagaccttctcccatacCTCACTTCCTTCATCAACTCATTCCTGACCACTTGCtgcgtcccctctgacttcaaaatggcccgcgtcgctcccctcctcaagaaaccagcACATGACTCATCTGACGTCAAAAACTATAGACCGatctatctgcTGCCATCGAtaccgtgaaccatcagatcctcctctccaccctctcagggctgggatctcaggctctgcacactatTATATTGCATCCAACCTGGCAGaccgctcctaccaggtggcaacacgcatctctgcgtgcctggcagatatctcaaattggatgtcggcccaccacctcaagctcaaacATGACAAGATGGAGCTGCTCTTCCTTTCAGTAAGGCCTGCACGCTCAAAGACCTATCCATCACGGTTGACCACTCCACAGTGTCACCCTCCCAGAATGCAAATAACCTTGGCTTGACCCTGGACAACcgtcattctctgcaaacatcacaGCAGCAACTCACTCCTGCAGGTTCAGGCTCTACAACATCCATGGAATATGACCCTGAATAATACAGGAAACGGTGCATGTTGTAATCCAGGGACTTGTCATCTCCCATATGGACTACTGCATCTCACTGTTGGCTGGGCTACCAGcgtgtgccatcaaacccctgtaacttatccagaatgctgcagcctgcctggttttcaaccttcccaagtcaccccactcctccacacactcctccacacaccttcaggctatgctcaaaccctacaccccaacccgagcactctgttctgccacctgGTCTCTTGGCCACTCTGTcttggcaccccaatggtggaaccagcttcccccagAAGACAGGACAGCAGAGTACCCGCCCATCTTCCGAAAGCACTTGGAACTCTACCTGTTCAAAAAGtatattaacctttctgatctccccatcccggatccgggatcgtgaatacagactcaagctcattaccataacgcaacgttaactattcatgaaaatcgcaaatgaaatgaaataaatatgctagctctcaagcttagccttttgttaacaaca

Function

NR:

description
reverse transcriptase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052021.1 False 1077 mRNA 0.50 4 50037523 50083540
TU60887 False 480 lncRNA 0.48 3 50037574 50184257
TU60888 True 1482 TUCP 0.50 4 50037574 50083996

Neighbor

gene id symbol gene type direction distance location
LOC118964840 NA coding upstream 188544 49847620 ~ 49848979 (+)
LOC110524421 NA coding upstream 203520 49823910 ~ 49834003 (+)
kitlg scf coding upstream 334565 49666532 ~ 49702958 (+)
LOC110524405 LOC106573116 coding upstream 597291 49435762 ~ 49440232 (+)
LOC110524349 LOC106573123 coding upstream 1222510 48804907 ~ 48815013 (+)
LOC110524434 LOC106573111 coding downstream 142816 50226356 ~ 50231065 (+)
LOC110524453 LOC106573109 coding downstream 372016 50455556 ~ 50509791 (+)
LOC110524456 LOC106573106 coding downstream 447108 50530648 ~ 50592851 (+)
LOC110524482 LOC106573107 coding downstream 517095 50600635 ~ 50675495 (+)
LOC110524496 LOC106573105 coding downstream 708656 50792196 ~ 50800380 (+)
G54571 NA non-coding upstream 49917 49987392 ~ 49987606 (+)
G54537 NA non-coding upstream 68489 49968832 ~ 49969034 (+)
G54532 NA non-coding upstream 71240 49966084 ~ 49966283 (+)
G54507 NA non-coding upstream 90677 49946607 ~ 49946846 (+)
G54481 NA non-coding upstream 110379 49926919 ~ 49927144 (+)
G54732 NA non-coding downstream 109821 50193361 ~ 50193729 (+)
G54800 NA non-coding downstream 201542 50285082 ~ 50285537 (+)
G54835 NA non-coding downstream 245018 50328558 ~ 50329351 (+)
G54841 NA non-coding downstream 253447 50336987 ~ 50337328 (+)
G54878 NA non-coding downstream 303558 50387098 ~ 50387332 (+)
G53181 NA other upstream 1143611 48893497 ~ 48893912 (+)
G52324 NA other upstream 1654266 48380542 ~ 48383257 (+)
G52080 NA other upstream 2012565 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2778625 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 3176059 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 1366282 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3582675 53632830 ~ 53705421 (+)
G59031 NA other downstream 3904600 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3961309 54044813 ~ 54089850 (+)
G59963 NA other downstream 4637648 54721188 ~ 54721463 (+)

Expression


Co-expression Network