LOC110524445 (LOC106573110)


Basic Information

Item Value
gene id LOC110524445
gene name LOC106573110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50367566 ~ 50374531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979433.1
AGTGCCTTTAAGACTAGACAAACTAACGGCTTTGGCGAATAATTGTCTTACCAGGGTAACCTATATAGATGCTCCATTTTGTCGAACGTCAACAGTAATTCTATTTGGTCAGTTGACAAGATTAATTTGAGCGACGGGATCTGAGGAAGAAGAAGATGATGATGGAATACGTGAACGATAAATTCGCATTGAAGTGTCAAGCGATTAAGAGCAGCGACTATTACATGGGCTCTGGCAGCGGGTTGGACCAAGTTATGGAGAGTTTGGACAGTGTACAGTACTACAGCAAATCCTCGCCCAAGTGTGTGCAGGCTTTCGGGCTACAGACCACCGAGCACAACACGCGAATGGAGCGGTCCTCACCGTGTGGAGAACAAAACGCGAATTATGGTGTCCCCAAAACTGAAGAAGATACCTTGCACGTGGACCTCGGGAGGTCGATAGACAACTGTTGCAATCTGAGGGACTCGCCGGTAATGGCAGGTCAGGAGAAAACGGATTTGTACGAAATCAGTGACAAGTGTGACAGTAACGTATCGAGCAGTAAGAAGAGGCGGCACAGGACGACGTTCACGAGCGCACAGCTGGAGGAGTTGGAGAAGGTGTTTCAGAAAACTCATTACCCAGATGTTTATGTGAGAGAACAGCTGGCGATGAGAACGGAGCTAACCGAGGCCAGAGTGCAGATCCCCAACAACCTGTGGCCCAGCCCTGCTCCCAGTGGCTCAATGGTGTCTTCCTGCATGCTCCCCCGTGGATCTCCTCCCTGTGTAACCTCCTACTCCCACTCCCCCCGCTCCGCAGCCGACCACGGGTATGTGGGCTTCCCCAACCAGCAGAACCAGTTTGGACACGTCTCCATCAACAACTTTTTCACGGCTGACTCCCTCCTCACACCCTCACCCAACGGACACCCGTTCGAGGCCAAGCCTGAGTTCGAGAGACGCTCATCCAGCATCGCCGTGCTGCGGATGAAGGCCAAGGAACATGCGGCTAACATATCCTGGGCCATTTGATTGGGATTGTGAACTTTCTGTCCTCCCAAACGACTGACTCACAGCCACTCTAACTTTATCATTAATACTACGCACGATAATTATATCCCCAATGTTGTATGACTGACAGTGAACTGACTGTGACACCGGATTGATGGAAGAGGACTACCTTAAATTTGAAATGATGTAGGCCTAGATGCTGATCGCTGACTAGCCATCTGCTGGAGAGACATGAACAAACTGTGCCCCTTTTGGTCAAAGTTGAGAGGACAGAGATGATGAACTGAAAGGTTATTAAAGGTCGCCTCATCAAGGTCGAGCTGTGAGTGCATATCAGTTTAATCCACACAGGCGACACTTACTTTCAGGTTAACAACCGATGTGAAAGAGTCATGGAAACACTCCCTAAGTGGGCCCTTTTTGCCAATTATTATTCATAATGAGGCACAATGTGTTGCTGAAAACGTGGTTGTCTATGGCTTTTACACTCCACTTCAGTTTGTTCTACACTGTAGGACTTACAGTACAAGTGTTGAGGTGTTTATATTGTCATTCCCTGTGCTTTCTAATTCCATTGCCCCATGCAGCTCTGGACATACAGAGGACCTGAACAGAAATGAAATGGACTGACACACTAACATGTCTGTGTGCTTTGCAGCAAAGCTATTTAACCCCCATTAGCTCTGTTTGTGTTATATGGCACCAGCACAGGAAGCAGTTGGTATTTTTGTAATAAGGTAATAAAAACATATGTCGTGACATCTTTTTTTGATAGTATATTTTTTCTTTTATTGTATTTCCCTCGCTCATTATAGACTCGGGATGGCGATCCGGGTCGGCAGTACAGGGATGTAAGCAAAGTGTTAGGCTACACTACAATAGTGTGAGTGACGTATTAAAAAGTATAGTGTAATATGAACAATCTACAtggaaataataataaaca
>XM_021604086.2
AGTGCCTTTAAGACTAGACAAACTAACGGCTTTGGCGAATAATTGTCTTACCAGGGTAACCTATATAGATGCTCCATTTTGTCGAACGTCAACAGTAATTCTATTTGGTCAGTTGACAAGATTAATTTGAGCGACGGGATCTGAGGAAGAAGAAGATGATGATGGAATACGTGAACGATAAATTCGCATTGAAGTGTCAAGCGATTAAGAGCAGCGACTATTACATGGGCTCTGGCAGCGGGTTGGACCAAGTTATGGAGAGTTTGGACAGTGTACAGTACTACAGCAAATCCTCGCCCAAGTGTGTGCAGGCTTTCGGGCTACAGACCACCGAGCACAACACGCGAATGGAGCGGTCCTCACCGTGTGGAGAACAAAACGCGAATTATGGTGTCCCCAAAACTGAAGAAGATACCTTGCACGTGGACCTCGGGAGGTCGATAGACAACTGTTGCAATCTGAGGGACTCGCCGGTAATGGCAGGTCAGGAGAAAACGGATTTGTACGAAATCAGTGACAAGTGTGACAGTAACGTATCGAGCAGTAAGAAGAGGCGGCACAGGACGACGTTCACGAGCGCACAGCTGGAGGAGTTGGAGAAGGTGTTTCAGAAAACTCATTACCCAGATGTTTATGTGAGAGAACAGCTGGCGATGAGAACGGAGCTAACCGAGGCCAGAGTGCAGGTGTGGTTTCAAAACAGAAGAGCCAAGTGGAGAAAAAGAGAACGTTATGGGCAGATTCAACAGGCAAAAAGTCATTTTGCAGCGACATATGACATATCAGTGTTGCCAAGGACGGATAGCTACTCACAAATCCCCAACAACCTGTGGCCCAGCCCTGCTCCCAGTGGCTCAATGGTGTCTTCCTGCATGCTCCCCCGTGGATCTCCTCCCTGTGTAACCTCCTACTCCCACTCCCCCCGCTCCGCAGCCGACCACGGGTATGTGGGCTTCCCCAACCAGCAGAACCAGTTTGGACACGTCTCCATCAACAACTTTTTCACGGCTGACTCCCTCCTCACACCCTCACCCAACGGACACCCGTTCGAGGCCAAGCCTGAGTTCGAGAGACGCTCATCCAGCATCGCCGTGCTGCGGATGAAGGCCAAGGAACATGCGGCTAACATATCCTGGGCCATTTGATTGGGATTGTGAACTTTCTGTCCTCCCAAACGACTGACTCACAGCCACTCTAACTTTATCATTAATACTACGCACGATAATTATATCCCCAATGTTGTATGACTGACAGTGAACTGACTGTGACACCGGATTGATGGAAGAGGACTACCTTAAATTTGAAATGATGTAGGCCTAGATGCTGATCGCTGACTAGCCATCTGCTGGAGAGACATGAACAAACTGTGCCCCTTTTGGTCAAAGTTGAGAGGACAGAGATGATGAACTGAAAGGTTATTAAAGGTCGCCTCATCAAGGTCGAGCTGTGAGTGCATATCAGTTTAATCCACACAGGCGACACTTACTTTCAGGTTAACAACCGATGTGAAAGAGTCATGGAAACACTCCCTAAGTGGGCCCTTTTTGCCAATTATTATTCATAATGAGGCACAATGTGTTGCTGAAAACGTGGTTGTCTATGGCTTTTACACTCCACTTCAGTTTGTTCTACACTGTAGGACTTACAGTACAAGTGTTGAGGTGTTTATATTGTCATTCCCTGTGCTTTCTAATTCCATTGCCCCATGCAGCTCTGGACATACAGAGGACCTGAACAGAAATGAAATGGACTGACACACTAACATGTCTGTGTGCTTTGCAGCAAAGCTATTTAACCCCCATTAGCTCTGTTTGTGTTATATGGCACCAGCACAGGAAGCAGTTGGTATTTTTGTAATAAGGTAATAAAAACATATGTCGTGACATCTTTTTTTGATAGTATATTTTTTCTTTTATTGTATTTCCCTCGCTCATTATAGACTCGGGATGGCGATCCGGGTCGGCAGTACAGGGATGTAAGCAAAGTGTTAGGCTACACTACAATAGTGTGAGTGACGTATTAAAAAGTATAGTGTAATATGAACAATCTACAtggaaataat

Function

NR:

description
ALX homeobox protein 1-like

GO: NA

KEGG:

id description
K09334 ALX1, CART1; ALX homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979433.1 False 1941 mRNA 0.47 3 50367566 50374531
XM_021604086.2 True 2062 mRNA 0.46 4 50367574 50374531

Neighbor

gene id symbol gene type direction distance location
LOC110524441 LOC106573156 coding downstream 97265 50260404 ~ 50270301 (-)
LOC110524413 LOC106573141 coding downstream 491074 49848378 ~ 49876492 (-)
LOC110532387 tmtc3 coding downstream 544594 49763995 ~ 49822972 (-)
cbpa1 cbpa1 coding downstream 1138935 49224712 ~ 49228631 (-)
LOC110524388 LOC106573117 coding downstream 1159049 49180132 ~ 49208517 (-)
LOC110524488 LOC106573155 coding upstream 344105 50718636 ~ 50752172 (-)
LOC110524514 borcs5 coding upstream 403185 50777716 ~ 50792069 (-)
LOC110532393 ckap5 coding upstream 434182 50808713 ~ 50850668 (-)
mapk8ip1a LOC106573101 coding upstream 496944 50871475 ~ 50888496 (-)
LOC110532401 NA coding upstream 522999 50897530 ~ 50991398 (-)
G54615 NA non-coding downstream 354828 50012509 ~ 50012738 (-)
G54612 NA non-coding downstream 357797 50009530 ~ 50009769 (-)
G54590 NA non-coding downstream 369163 49998185 ~ 49998403 (-)
G54572 NA non-coding downstream 380000 49987195 ~ 49987566 (-)
G54536 NA non-coding downstream 399018 49967643 ~ 49968548 (-)
G55395 NA non-coding upstream 12475 50387006 ~ 50387249 (-)
G55416 NA non-coding upstream 49090 50423621 ~ 50423840 (-)
G55417 LOC100194703 non-coding upstream 49954 50424485 ~ 50424743 (-)
G55553 NA non-coding upstream 264382 50638913 ~ 50639142 (-)
G55611 NA non-coding upstream 355651 50730182 ~ 50733113 (-)
LOC110532382 LOC106573120 other downstream 1381649 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 2063430 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 2806357 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 2989023 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 3077885 47288939 ~ 47289681 (-)
G55408 NA other upstream 37103 50411634 ~ 50412128 (-)
G55627 NA other upstream 390832 50765363 ~ 50767431 (-)
G56372 NA other upstream 1026196 51400727 ~ 51412569 (-)
G56764 NA other upstream 1372086 51746617 ~ 51747220 (-)

Expression


Co-expression Network