LOC110524482 (LOC106573107)


Basic Information

Item Value
gene id LOC110524482
gene name LOC106573107
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50600635 ~ 50675495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604185.2
ATcgtgttttttctttatttttgtaattgTGTAACATTTCCCAAAGCTGAGATCTGTACATGTCTTGGCTGCACTCCTCCCGGGCGTCGCGCCCTCCGCACTATCACCCATTTTAGCCTGGGTCTATACCTCGCTCTCAACTCTGCATACTAGCACGAGCTGAATCTTTCAACGGTTACACATGACGCTGGGCTGTTATGGGCGACGCTCCTCTTGCAGCTGGCTGAGCGACACGCCTCCCGAAGCCTCATGCAACAGCGACCCTAAGCAGCGCACCGTTTTTAAcggtttctttctttctttcatgtgACCGAAGAAGGCCCGTTTAACGGGAGATTTCGACGATGAGTAGCTTCATGAATATGGCGTGTATTGGAGACTTTGACCCATTCACCGCTGCCATTCCCGCCACCAGAGTTGAGCTCACGGTGTCGTGTAGAAATCTCCTGGACAGAGACACATTCTCCAAATCAGACCCAATTTGTGTGCTGTATACACAAGGAATCGCCAACAGGGAATGGAGAGAGTTTAGTCGGACAGAGATGATAAACAACACCCTGAATCCAGACTTTGTCCGGAAATTCACCCTGGACTATTTCTTTGAAGAGAGACAGAATCTACGATTTGACCTGTACGACCTCGACTCGAAGAGCGACAACCTGTCTAAACATgacttcCTTGGCCAGGCATTCTGTACCCTGGGGGAGGTGGTGGGCTCCATGGGAAGCTGCGTGGAAAAACCTCTCATTGGGATTCCAGGGAAGAAGTGTGGTACCATCAAAGTGAGAGCAGAGGAGCTGAGCAATTGCAGGGAGTCAGTGATGCTGCAATTCTGTGGGAACAAGTTGGACAAGAAAGACTTCTTTGGGAAATCGGATCCTTTTCTGGTCTTCTACCGCAGTAACGAAGACGGATCATTTACTATCTGCCATAAGACCGAGGTGGTGAAGAACACTCTGGACCCAGTGTGGCAGGCCTTCAAGATCCCTGTCAAGGCCCTGTGCAACGGAGACTATGACAGgaGCATAAAAGTGGAGGTGTATGATTGGGACCGAGATGGAGGCCATGACTTCATTGGGGAATTCAATACCAGCTACAGAGAGATGTCAAGAGGCCAGTCACAGTTTCACAGCTACGAGGTGGTCAATCCAAAGAAGAAaggcaagaagaagaagaaatacCTCAACTCGGGAACAGTAACCCTTCTGTCCTGCCTGGTGGACATGGAGCTCACCTTCCTGGATTACATTAAAGGAGGGACTCAGATTAGTTTCACAGTGGCAATTGATTTCACAGCATCAAATGGCAACCCCTCCCAGCCCACCTCTCTACACTACATGAGTCCGTACCAGCTGAATGCCTACGCCATGGCTCTGAGAGCTGTAGGGGAGATTATCCAGGACTACGACAGTGACAAGATGTTCCCTGCACTGGGCTTCGGAGCTAAACTGCCCCCGGACGGACGGGTCTCGCACGAGTTCGCTCTGaATGGGAACCCCCAGAATCCGTACTGCAGTGGGATAGAGGGGGTGATGGAGGCTTACTACCAAAGCCTTAAGTCTGTTCGACTCTATGGTCCCACACATTTCTCCCCTGTCATTAACCACGTGGCCAGGTATGCACAATCAGTCAAAGATGGCTCCCAGTACTTCATCCTCCTTATCATCTCGGACGGCGTCATCACCGACATGGCCCAGACCAAGGAGTCCATCGTAAACGCAGCTACTTTGCCCATGTCAATTATAATTGTCGGAGTTGGACCAGCAGAATTTAATGAAATGATTGAGCTTgatggagatgaagagaggatcTCATCCCAAGGGAGGTTCGCCGAGAGAGACATTGTTCAGTTTGTTCCGTTCCGTGACTACATCGACCGCAGGGGGAACCACATTCTGAGTATGGCCCGTCTGGCCAAGGAGGTCCTGGCTGAGATCCCTGACCAGTTCCTCTCCTACATGAGAACCAGGTGCATCAAACCAGGCCTCTGCCCCCCTGCCTACAACCCTGCCCCCGCCGTGCACCCCCTCCTCACCCGACGGGTCAGCCGAATCTGAGGGGTAAGCCTCCTCCGGAGCCTCTTCCTTTCTTGCTTCTTCTTCCTCACTGGAGTTTGACAATGGCGGTCCGAAGAAGCCAACCGCCATTTCCACTCTCTTGTTGCACTTTTGTGAATTCTGACTTCCTCTCTGCAGAAAGGACAGCAAGGCATTTTGCTTCTATTTAAAGTGTCCCTCAGGAAGGACTTCCCATGAGATGTCAGAGGACACAGTTTACTGGTCTGACCCAGGAAGTGGGAGAGTGCCTAGAACTGACCAACCAGGAGCAGCATCCAATCTGTGAAGAACCATTCAGAAGTACATTTCTGTCTCTTATTTCTATGCCCTACTCTTCCTCTCAACCCCACTTTTGTCTCACCAACGGTCTCTTTCTAAATGTTTACAAAGTtaaggatgaagaggaggatttGTACttgtggatatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttc
>TU61262
TCTCTGCAGAAAGGACAGCAAGGCATTTTGCTTCTATTTAAAGTGTCCCTCAGGAAGGACTTCCCATGAGATGTCAGAGGACACAGTTTACTGGTCTGACCCAGGAAGTGGGAGAGTGCCTAGAACTGACCAACCAGGAGCAGCATCCAATCTGTGAAGAACCATTCAGAAGTACATTTCTGTCTCTTATTTCTATGCCCTACTCTTCCTCTCAACCCCACTTTTGTCTCACCAACGGTCTCTTTCTAAATGTTTACAAAGTtaaggatgaagaggaggatttGTACttgtggatatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccacttgacaaatttcttgtcaacaaactatagttttggcaagtcggttaggatatctactttgtgtatgacacaagtagttgttctaacaattgtttacagtgcctctttgcttgacatcatgggaaaatgaaaagaaatcagccaagacctcagaaaaaaaattgtagacctccacaagtctggttgatccttgggagctatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagcacgcaagtataaacaccatcggaccacgcagccttcatacctCTACTTTGgtggaaaagtgcaaatcaatcccagaacaacagcaaaggaccctgtgaagatggaaatgtcctctggtctgatgaaacaaaaatagaactgtttgaccataatgaccatcgttatgtttggaggaaaaagggggatgcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtttgggtgctttactgcaggagggactggtgcacttcacaaaatagatggcatcatgaagcatgaaaatgttgtggatatattgaagcaacatctcaagacatcagtcaggcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggtgtggccatcacaaagccctgacctcaatcccatagaaaatttgtgggcagaactgaaaaagtgtgtgcgagcaatgaggcctacaaacgactctgttacaccatgtctgtcaggagtaatgggccaaatttcacccaacttattgtgggaagcttgtgaaaggctatccgaaacgtttgacccaagttaaataatttaaaggcaatgctaccaaatactaata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604185.2 False 2541 mRNA 0.50 20 50600635 50674175
TU61262 True 1297 lncRNA 0.43 3 50673821 50675495

Neighbor

gene id symbol gene type direction distance location
LOC110524456 LOC106573106 coding upstream 7784 50530648 ~ 50592851 (+)
LOC110524453 LOC106573109 coding upstream 90844 50455556 ~ 50509791 (+)
LOC110524434 LOC106573111 coding upstream 369570 50226356 ~ 50231065 (+)
LOC118964841 NA coding upstream 517095 50037523 ~ 50184257 (+)
LOC118964840 NA coding upstream 751656 49847620 ~ 49848979 (+)
LOC110524496 LOC106573105 coding downstream 118021 50792196 ~ 50800380 (+)
c1h11orf49 cssa16h11orf49 coding downstream 182405 50856580 ~ 50871347 (+)
LOC118964313 NA coding downstream 317808 50991983 ~ 50993119 (+)
LOC110524544 LOC106573154 coding downstream 397521 51071696 ~ 51075445 (+)
LOC118964319 NA coding downstream 480332 51154507 ~ 51155396 (+)
G54907 NA non-coding upstream 171038 50429239 ~ 50429597 (+)
G54906 NA non-coding upstream 171730 50428578 ~ 50428905 (+)
G54902 LOC100194703 non-coding upstream 175596 50424474 ~ 50425039 (+)
G54901 NA non-coding upstream 176380 50423931 ~ 50424255 (+)
G54987 NA non-coding downstream 3163 50677338 ~ 50678112 (+)
G55058 NA non-coding downstream 27422 50701597 ~ 50774393 (+)
G55070 LOC106573111 non-coding downstream 44507 50718682 ~ 50720223 (+)
G55101 NA non-coding downstream 103735 50777910 ~ 50779569 (+)
G55115 ckap5 non-coding downstream 135971 50810146 ~ 50817448 (+)
G53181 NA other upstream 1706723 48893497 ~ 48893912 (+)
G52324 NA other upstream 2217378 48380542 ~ 48383257 (+)
G52080 NA other upstream 2575677 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3341737 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 775647 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 2992040 53632830 ~ 53705421 (+)
G59031 NA other downstream 3313965 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3370674 54044813 ~ 54089850 (+)
G59963 NA other downstream 4047013 54721188 ~ 54721463 (+)
G55023 NA non-coding upstream 33043 50640560 ~ 50640778 (+)

Expression


Co-expression Network