LOC110524488 (LOC106573155)


Basic Information

Item Value
gene id LOC110524488
gene name LOC106573155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50718636 ~ 50752172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979494.1
GAGGGAAACATGAAAGGCTTTGCTGTTCCATCAGTGGTGAGAATAATGAAGACGGGAGGTTGTGTGATTGTGTGAGCGAGCCTCTCCCAGGCCTTTCTCAGCATTCAGCACTTTGACCCAGGTTAGCGCTCCACCAGAGGCTCACTGGGAAGGCCTGGAGATGGAGGGCCGTATTCTGCAACACACCGTATAAGTATGTGTATGGTTCAGTGCCCatcacacacagccatgcaggtgcgcgcacacatacacacacacacacagtatgcatACTTGtgcagtttatatatatatatatatacatacacatttcATATGCATATTGCTGACTTCAAACAAGCACATCAACAAACCCATGGCACAGGCAGTTCTGCACAATATGTGCACTCACACAGACAATGTACATTCGACAATACTGAATTGATATCAATATCGCCTACCTACACCGTAAGCAGAgaatgataatgatgataataatttGTTCAAACCTTTTTCTTTTCTGTCCTACCTGAAGTGTGTCTCCATCATGAGGCTGGTGTGGAAGTCCCTGGACAAGATGAGGTGTTTCCGTAAACGCTCCACCATCCCCTTCCTGGGGGTCCTGATCACATGTCTTCTGTTCTTCAACCTGTATATGGAGGATGGATACGTCTTGGAGGCGGGTAAAAGACAGCTGATGCATCCTTCAAACTCTGAGAGATATGTTCACAACTTTAGAGACCTCACAAATTTCTCTGGAACCATAAACATCACATACCGTTACCTCGCTGGGAATCCACTGCCCCGgaaaaAATTTCTAACCATTGGGTTGTCATCTGTGAAAAGAAAAAAAGGGAATTACCTCATGGAGACGATCAAATCCATTTTTGACCAGTCCAGTTATGAGGAACTGAAAGAGATTGTGGTGGTGGTTCACCTGGCAGACTTTGACCTGGCCTGGTGTGAAAAGCTGGTGCAGGACATCTCCAGGAAGTTTGCCCACCACATCATCGCAGGGCGTCTCCTAGTGATCCATGCCCCTGAGGAGTACTACCCATCACTGGATGGGCTGAAAAGGAACTACGACGACCCAGAGGACAGGGTACGCTTCCGCTCCAAGCAGAACGTGGACTACGCCTTCCTCCTCAACTTCTGCACCAACCTCTCAGATTTTTACATGATGCTGGAGGACGATGTGCTCTGCTCACGGAACTTCCTGACATCCCTGAAGAAGGTGGTCACCTCCAGGGAAGGCTCCTACTGGGTGATGCTGGAATTCTCCAAGCTTGGCTACATAGGGAAGCTCTACCAATCAAGAGACCTGCCGCGCCTGGTCCACTTCCTGCTCATGTTCTACCAGGAGATGCCTTGCGACTGGCTCCTTATTCACTTCCGGGGCCTGTTGGCCCAGAAAAATGTGATCCGCTTCAAGCCCTCTCTGTTCCAGCACATGGGCTACTACTCCTCATATAAGGGGACAGAGAACAAGTTGAAGGATGATGACTTTGAAGAGGACTCTATTGATATCCCTGACAACCCTCCTGCCAGCCTGTACACAAACATTAATGTATTTGAAAACTATGACGCCACCAAGGCTTATAGCAGTGTGGACGAATACTTTTGGGGGAAACCCCCCTCTACCGGAGACTTCTTTGTCATTGTCTTTCACGAACCAAGCAATATTAGCAATATCAAAATCTTGACAGGAACGGACGATCGTCAGAATGATATCCTGCACCATGGAGCTCTGGAAGTAGGAGAGAAGCTGGTGGGGACAAAGAGAGGAAGGCAGTGTTCTTCCTACATCACGTTAGGGGAGTTTAAAAATGGCAACATTGACGTTCAAGACGTGGACCACAAGATTGCCTTTGACATCCAGTGTGTTCGTATTGTGGTGACTGCCAGTCAGAATGAATGGCTGATTATTAGGAAAATAAGTCTGTGGACGACATAGTTGGCACACAGAGGGCTCATACTATCTGGACTAAAGTGTTGTATTCATTTATATATATTGATTATATTGGATGCTTTATGGTTTATATTCCTTTATACTTtgcatacagtagcctacatttttttttttatctgaaacAATTAGACTATTGGGTTGTCAGCATTGTATGTTTTTCATAAAATAAAATGCAGACAATTGT
>XM_021604198.2
GACCAAACGTCTGGAAAGGGGAGGAGAGTCAGGAGAGGGAAAAACTGACAACAAATGAGAAGCAGTGTATGTGCAGACACAGTGACACCTTGGTGAGGAGAGTCAGAGCGGGGGAGTGAGGCAGGCAGAGGGGAAGAGAGTAAGAGGGCTGGAAAAGAGAGACTGAGATcaaagagagcgagatggagacagacagagatagccTCACCAGACGACTGCCATTATAATTAGTGTTTACGGAACTTTTTTCAGAGCTAATGATCTGCTCTTGTGTGAGTCACGGAGATAATTTAGACTGGTGGCAACGTGCAGCACAGAGCATCGCCAGAACTCCTTCACATTCACACAGACAGCAGGCAGTGTGTCTCCATCATGAGGCTGGTGTGGAAGTCCCTGGACAAGATGAGGTGTTTCCGTAAACGCTCCACCATCCCCTTCCTGGGGGTCCTGATCACATGTCTTCTGTTCTTCAACCTGTATATGGAGGATGGATACGTCTTGGAGGCGGGTAAAAGACAGCTGATGCATCCTTCAAACTCTGAGAGATATGTTCACAACTTTAGAGACCTCACAAATTTCTCTGGAACCATAAACATCACATACCGTTACCTCGCTGGGAATCCACTGCCCCGgaaaaAATTTCTAACCATTGGGTTGTCATCTGTGAAAAGAAAAAAAGGGAATTACCTCATGGAGACGATCAAATCCATTTTTGACCAGTCCAGTTATGAGGAACTGAAAGAGATTGTGGTGGTGGTTCACCTGGCAGACTTTGACCTGGCCTGGTGTGAAAAGCTGGTGCAGGACATCTCCAGGAAGTTTGCCCACCACATCATCGCAGGGCGTCTCCTAGTGATCCATGCCCCTGAGGAGTACTACCCATCACTGGATGGGCTGAAAAGGAACTACGACGACCCAGAGGACAGGGTACGCTTCCGCTCCAAGCAGAACGTGGACTACGCCTTCCTCCTCAACTTCTGCACCAACCTCTCAGATTTTTACATGATGCTGGAGGACGATGTGCTCTGCTCACGGAACTTCCTGACATCCCTGAAGAAGGTGGTCACCTCCAGGGAAGGCTCCTACTGGGTGATGCTGGAATTCTCCAAGCTTGGCTACATAGGGAAGCTCTACCAATCAAGAGACCTGCCGCGCCTGGTCCACTTCCTGCTCATGTTCTACCAGGAGATGCCTTGCGACTGGCTCCTTATTCACTTCCGGGGCCTGTTGGCCCAGAAAAATGTGATCCGCTTCAAGCCCTCTCTGTTCCAGCACATGGGCTACTACTCCTCATATAAGGGGACAGAGAACAAGTTGAAGGATGATGACTTTGAAGAGGACTCTATTGATATCCCTGACAACCCTCCTGCCAGCCTGTACACAAACATTAATGTATTTGAAAACTATGACGCCACCAAGGCTTATAGCAGTGTGGACGAATACTTTTGGGGGAAACCCCCCTCTACCGGAGACTTCTTTGTCATTGTCTTTCACGAACCAAGCAATATTAGCAATATCAAAATCTTGACAGGAACGGACGATCGTCAGAATGATATCCTGCACCATGGAGCTCTGGAAGTAGGAGAGAAGCTGGTGGGGACAAAGAGAGGAAGGCAGTGTTCTTCCTACATCACGTTAGGGGAGTTTAAAAATGGCAACATTGACGTTCAAGACGTGGACCACAAGATTGCCTTTGACATCCAGTGTGTTCGTATTGTGGTGACTGCCAGTCAGAATGAATGGCTGATTATTAGGAAAATAAGTCTGTGGACGACATAGTTGGCACACAGAGGGCTCATACTATCTGGACTAAAGTGTTGTATTCATTTATATATATTGATTATATTGGATGCTTTATGGTTTATATTCCTTTATACTTtgcatacagtagcctacatttttttttttatctgaaacAATTAGACTATTGGGTTGTCAGCATTGTATGTTTTTCATAAAATAAAATGCAGACAATTGT

Function

NR:

description
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like

GO: NA

KEGG:

id description
K13748 MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979494.1 False 2132 mRNA 0.46 3 50718636 50720968
XM_021604198.2 True 1978 mRNA 0.47 4 50718636 50752172

Neighbor

gene id symbol gene type direction distance location
LOC110524445 LOC106573110 coding downstream 344105 50367566 ~ 50374531 (-)
LOC110524441 LOC106573156 coding downstream 448335 50260404 ~ 50270301 (-)
LOC110524413 LOC106573141 coding downstream 842144 49848378 ~ 49876492 (-)
LOC110532387 tmtc3 coding downstream 895664 49763995 ~ 49822972 (-)
cbpa1 cbpa1 coding downstream 1490005 49224712 ~ 49228631 (-)
LOC110524514 borcs5 coding upstream 25544 50777716 ~ 50792069 (-)
LOC110532393 ckap5 coding upstream 56541 50808713 ~ 50850668 (-)
mapk8ip1a LOC106573101 coding upstream 119303 50871475 ~ 50888496 (-)
LOC110532401 NA coding upstream 145358 50897530 ~ 50991398 (-)
zgc:101566 LOC106573100 coding upstream 340353 51041431 ~ 51144745 (-)
G55553 NA non-coding downstream 79494 50638913 ~ 50639142 (-)
G55417 LOC100194703 non-coding downstream 293893 50424485 ~ 50424743 (-)
G55416 NA non-coding downstream 294796 50423621 ~ 50423840 (-)
G55395 NA non-coding downstream 331387 50387006 ~ 50387249 (-)
G54615 NA non-coding downstream 705898 50012509 ~ 50012738 (-)
G55628 NA non-coding upstream 14987 50767159 ~ 50814287 (-)
G55665 NA non-coding upstream 100034 50852206 ~ 50852412 (-)
G55753 NA non-coding upstream 138252 50890424 ~ 50891828 (-)
G55755 NA non-coding upstream 141145 50893317 ~ 50896831 (-)
G55840 NA non-coding upstream 241513 50993685 ~ 50993951 (-)
G55408 NA other downstream 306508 50411634 ~ 50412128 (-)
LOC110532382 LOC106573120 other downstream 1732719 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 2414500 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 3157427 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 3340093 47377641 ~ 47378543 (-)
G55627 NA other upstream 13191 50765363 ~ 50767431 (-)
G56372 NA other upstream 648555 51400727 ~ 51412569 (-)
G56764 NA other upstream 994445 51746617 ~ 51747220 (-)
G57742 NA other upstream 1743726 52495898 ~ 52496234 (-)

Expression


Co-expression Network