LOC110524496 (LOC106573105)


Basic Information

Item Value
gene id LOC110524496
gene name LOC106573105
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50792196 ~ 50800380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604210.2
GACAAGGAGTTATACATTTGGTAGCCAATCACACACGACAACACAGTGTCTTTAAAACATTGGCGGTCGAAGTAGACGACAGTGTAACGTTTGTTTTCAGAATTATCGTAATAACGTTTTGCTTTATGTCACATACATCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGGCTACACAGACCGATTGCAACTCCAATTGTTTCTTTGGGTCCTCAGCGAGTTCAGATGCCCTCTGCACCAGACGCTACAGACAAAAAAGCAATTACAGGTCCTGGGAAAGAGCTTGCCACGTCTTCATCCAGTGCAGCTCTAGCAAACAGGAAATTCACCATCAATGACTTTGACATTGGGCGGCCACTCGGAAAAGGCAAGTTTGGGAACGTTTACCTGGCCCGGGATAAGAAGCTGGACTTCATCGTGGCGCTGAAGGTGCTCTTCAAGTctcagatggagaaagagggcgTGGAGCACCAGCTCAGGAGGGAGATTGAGATTCAGTCCCACCTTAGACACCCCAACATCCTGCACTTCTACAACTACTTTCATGACCGCACCAGGGTCTTCCTAATCCTGGAGTACGCGCCGCGGGGGGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTTGATGACCAGCGCACTGCTACATACATGGAGGAGTTGTCTGATGCGCTGCTGTACTGCCATGAGAGAAAGGTGATCCATCGGGACATCAAGCCTGAGAACCTGCTGCTGGGATTCCGGGGAGAGCTGAAGATAGCAGACTTTGGCTGGTCTGTCCacgcaccatccctaagGCGCCATACAATGTGTGGAACACTGGACTACCTGCCCCCAGAGATGATTGAGGGAAAGCCCCACGATGAGAAGGTGGACTTGTGGTGCATCGGGGTGCTCTGCTATGAGTGCCTAGTTGGCAACCCCCCTTTTGAAACCGCCAGCAACTCTGAAACGTACAAGCGCATCACAAAGGTGGACCTGCAGTTCCCCAAAGTGGTGTCCGACGGGGCTAGGGACCTGATCTCTAAGCTGCTCCGCCACAGCCCCTCCAAGCGGCTGCCGCTGCGGAATGTAATTGACCACCCATGGGTGAAAAACAACTCACGGCGGGTCCTACCTCCTGCCTTTCCTCTCAAGAAACCCTAACGTCAGTTGTTCCAGCCTGTTACAAACTGCTAAGAAACCCTAAAAGCACCAAAGAGACAAATCTATTCACGGTTCCAGTCTGCCTTCTACCTGAGTGGGGGACTATGGTGATatgttttgtttctttttttcctTCTCCACTTAAGGgtttcacactttttttgttacctGGGCAATCTTCATCCACAGggtttagagtggtcttttagctTCTAATTTCTCTGATTTCTAagatctgaggggggggggggggggggtttgggaaAACCTGAACTAGATTACTGTCATTTTTATATTTCAATTTACACCAAGAACAGGTTAAGGCTGCTCTCTACTGGTAGAAATTAGGAAGGCCATTGAGAATAAGGATGATTGCTTTtataattcttaaatggatttCAAGAAGAGGATGTCTGTCTACTAACTAAAGTATTTTCAGTTTTTGTACAGCATGTGTATATAACGGCATCTACAAGCAAAGTTTATGTATCTGAAATTTCCTTGTGCAACTGTTTTGAAATAAAAATCATCCCAACTGTGAGGGAACCTTAAA
>XM_021604218.2
ACAAGGAGTTATACATTTGGTAGCCAATCACACACGACAACACAGTGTCTTTAAAACATTGGCGGTCGAAGTAGACGACAGTGTAACGTTTGTTTTCAGAATTATCGTAATAACGTTTTGCTTTATGTCACATACATCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGGCTACACAGACCGATTGCAACTCCAATTGTTTCTTTGGGTCCTCAGCGAGTTCAGATGCCCTCTGCACCAGACGCTACAGACAAAAAAGCAATTACAGGTCCTGGGAAAGAGCTTGCCACGTCTTCATCCAGTGCAGCTCTAGCAAAGAAATTCACCATCAATGACTTTGACATTGGGCGGCCACTCGGAAAAGGCAAGTTTGGGAACGTTTACCTGGCCCGGGATAAGAAGCTGGACTTCATCGTGGCGCTGAAGGTGCTCTTCAAGTctcagatggagaaagagggcgTGGAGCACCAGCTCAGGAGGGAGATTGAGATTCAGTCCCACCTTAGACACCCCAACATCCTGCACTTCTACAACTACTTTCATGACCGCACCAGGGTCTTCCTAATCCTGGAGTACGCGCCGCGGGGGGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTTGATGACCAGCGCACTGCTACATACATGGAGGAGTTGTCTGATGCGCTGCTGTACTGCCATGAGAGAAAGGTGATCCATCGGGACATCAAGCCTGAGAACCTGCTGCTGGGATTCCGGGGAGAGCTGAAGATAGCAGACTTTGGCTGGTCTGTCCacgcaccatccctaagGCGCCATACAATGTGTGGAACACTGGACTACCTGCCCCCAGAGATGATTGAGGGAAAGCCCCACGATGAGAAGGTGGACTTGTGGTGCATCGGGGTGCTCTGCTATGAGTGCCTAGTTGGCAACCCCCCTTTTGAAACCGCCAGCAACTCTGAAACGTACAAGCGCATCACAAAGGTGGACCTGCAGTTCCCCAAAGTGGTGTCCGACGGGGCTAGGGACCTGATCTCTAAGCTGCTCCGCCACAGCCCCTCCAAGCGGCTGCCGCTGCGGAATGTAATTGACCACCCATGGGTGAAAAACAACTCACGGCGGGTCCTACCTCCTGCCTTTCCTCTCAAGAAACCCTAACGTCAGTTGTTCCAGCCTGTTACAAACTGCTAAGAAACCCTAAAAGCACCAAAGAGACAAATCTATTCACGGTTCCAGTCTGCCTTCTACCTGAGTGGGGGACTATGGTGATatgttttgtttctttttttcctTCTCCACTTAAGGgtttcacactttttttgttacctGGGCAATCTTCATCCACAGggtttagagtggtcttttagctTCTAATTTCTCTGATTTCTAagatctgaggggggggggggggggggtttgggaaAACCTGAACTAGATTACTGTCATTTTTATATTTCAATTTACACCAAGAACAGGTTAAGGCTGCTCTCTACTGGTAGAAATTAGGAAGGCCATTGAGAATAAGGATGATTGCTTTtataattcttaaatggatttCAAGAAGAGGATGTCTGTCTACTAACTAAAGTATTTTCAGTTTTTGTACAGCATGTGTATATAACGGCATCTACAAGCAAAGTTTATGTATCTGAAATTTCCTTGTGCAACTGTTTTGAAATAAAAATCATCCCAACTGTGAGGGAACCTTAAA
>XM_021604227.2
ACAAGGAGTTATACATTTGGTAGCCAATCACACACGACAACACAGTGTCTTTAAAACATTGGCGGTCGAAGTAGACGACAGTGTAACGTTTGTTTTCAGAATTATCGTAATAACGTTTTGCTTTATGTCACATACATCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGGCTACACAGACCGCGAGTTCAGATGCCCTCTGCACCAGACGCTACAGACAAAAAAGCAATTACAGGTCCTGGGAAAGAGCTTGCCACGTCTTCATCCAGTGCAGCTCTAGCAAACAGGAAATTCACCATCAATGACTTTGACATTGGGCGGCCACTCGGAAAAGGCAAGTTTGGGAACGTTTACCTGGCCCGGGATAAGAAGCTGGACTTCATCGTGGCGCTGAAGGTGCTCTTCAAGTctcagatggagaaagagggcgTGGAGCACCAGCTCAGGAGGGAGATTGAGATTCAGTCCCACCTTAGACACCCCAACATCCTGCACTTCTACAACTACTTTCATGACCGCACCAGGGTCTTCCTAATCCTGGAGTACGCGCCGCGGGGGGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTTGATGACCAGCGCACTGCTACATACATGGAGGAGTTGTCTGATGCGCTGCTGTACTGCCATGAGAGAAAGGTGATCCATCGGGACATCAAGCCTGAGAACCTGCTGCTGGGATTCCGGGGAGAGCTGAAGATAGCAGACTTTGGCTGGTCTGTCCacgcaccatccctaagGCGCCATACAATGTGTGGAACACTGGACTACCTGCCCCCAGAGATGATTGAGGGAAAGCCCCACGATGAGAAGGTGGACTTGTGGTGCATCGGGGTGCTCTGCTATGAGTGCCTAGTTGGCAACCCCCCTTTTGAAACCGCCAGCAACTCTGAAACGTACAAGCGCATCACAAAGGTGGACCTGCAGTTCCCCAAAGTGGTGTCCGACGGGGCTAGGGACCTGATCTCTAAGCTGCTCCGCCACAGCCCCTCCAAGCGGCTGCCGCTGCGGAATGTAATTGACCACCCATGGGTGAAAAACAACTCACGGCGGGTCCTACCTCCTGCCTTTCCTCTCAAGAAACCCTAACGTCAGTTGTTCCAGCCTGTTACAAACTGCTAAGAAACCCTAAAAGCACCAAAGAGACAAATCTATTCACGGTTCCAGTCTGCCTTCTACCTGAGTGGGGGACTATGGTGATatgttttgtttctttttttcctTCTCCACTTAAGGgtttcacactttttttgttacctGGGCAATCTTCATCCACAGggtttagagtggtcttttagctTCTAATTTCTCTGATTTCTAagatctgaggggggggggggggggggtttgggaaAACCTGAACTAGATTACTGTCATTTTTATATTTCAATTTACACCAAGAACAGGTTAAGGCTGCTCTCTACTGGTAGAAATTAGGAAGGCCATTGAGAATAAGGATGATTGCTTTtataattcttaaatggatttCAAGAAGAGGATGTCTGTCTACTAACTAAAGTATTTTCAGTTTTTGTACAGCATGTGTATATAACGGCATCTACAAGCAAAGTTTATGTATCTGAAATTTCCTTGTGCAACTGTTTTGAAATAAAAATCATCCCAACTGTGAGGGAACCTTAAA
>XM_021604236.2
CAAGGAGTTATACATTTGGTAGCCAATCACACACGACAACACAGTGTCTTTAAAACATTGGCGGTCGAAGTAGACGACAGTGTAACGTTTGTTTTCAGAATTATCGTAATAACGTTTTGCTTTATGTCACATACATCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGGCTACACAGACCGCGAGTTCAGATGCCCTCTGCACCAGACGCTACAGACAAAAAAGCAATTACAGGTCCTGGGAAAGAGCTTGCCACGTCTTCATCCAGTGCAGCTCTAGCAAAGAAATTCACCATCAATGACTTTGACATTGGGCGGCCACTCGGAAAAGGCAAGTTTGGGAACGTTTACCTGGCCCGGGATAAGAAGCTGGACTTCATCGTGGCGCTGAAGGTGCTCTTCAAGTctcagatggagaaagagggcgTGGAGCACCAGCTCAGGAGGGAGATTGAGATTCAGTCCCACCTTAGACACCCCAACATCCTGCACTTCTACAACTACTTTCATGACCGCACCAGGGTCTTCCTAATCCTGGAGTACGCGCCGCGGGGGGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTTGATGACCAGCGCACTGCTACATACATGGAGGAGTTGTCTGATGCGCTGCTGTACTGCCATGAGAGAAAGGTGATCCATCGGGACATCAAGCCTGAGAACCTGCTGCTGGGATTCCGGGGAGAGCTGAAGATAGCAGACTTTGGCTGGTCTGTCCacgcaccatccctaagGCGCCATACAATGTGTGGAACACTGGACTACCTGCCCCCAGAGATGATTGAGGGAAAGCCCCACGATGAGAAGGTGGACTTGTGGTGCATCGGGGTGCTCTGCTATGAGTGCCTAGTTGGCAACCCCCCTTTTGAAACCGCCAGCAACTCTGAAACGTACAAGCGCATCACAAAGGTGGACCTGCAGTTCCCCAAAGTGGTGTCCGACGGGGCTAGGGACCTGATCTCTAAGCTGCTCCGCCACAGCCCCTCCAAGCGGCTGCCGCTGCGGAATGTAATTGACCACCCATGGGTGAAAAACAACTCACGGCGGGTCCTACCTCCTGCCTTTCCTCTCAAGAAACCCTAACGTCAGTTGTTCCAGCCTGTTACAAACTGCTAAGAAACCCTAAAAGCACCAAAGAGACAAATCTATTCACGGTTCCAGTCTGCCTTCTACCTGAGTGGGGGACTATGGTGATatgttttgtttctttttttcctTCTCCACTTAAGGgtttcacactttttttgttacctGGGCAATCTTCATCCACAGggtttagagtggtcttttagctTCTAATTTCTCTGATTTCTAagatctgaggggggggggggggggggtttgggaaAACCTGAACTAGATTACTGTCATTTTTATATTTCAATTTACACCAAGAACAGGTTAAGGCTGCTCTCTACTGGTAGAAATTAGGAAGGCCATTGAGAATAAGGATGATTGCTTTtataattcttaaatggatttCAAGAAGAGGATGTCTGTCTACTAACTAAAGTATTTTCAGTTTTTGTACAGCATGTGTATATAACGGCATCTACAAGCAAAGTTTATGTATCTGAAATTTCCTTGTGCAACTGTTTTGAAATAAAAATCATCCCAACTGTGAGGGAACCTTAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K11479 AURKB; aurora kinase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604210.2 False 1706 mRNA 0.47 9 50792196 50800380
XM_021604218.2 False 1702 mRNA 0.47 9 50792197 50800380
XM_021604227.2 False 1672 mRNA 0.47 9 50792197 50800380
XM_021604236.2 True 1668 mRNA 0.47 9 50792198 50800380

Neighbor

gene id symbol gene type direction distance location
LOC110524482 LOC106573107 coding upstream 118021 50600635 ~ 50675495 (+)
LOC110524456 LOC106573106 coding upstream 199345 50530648 ~ 50592851 (+)
LOC110524453 LOC106573109 coding upstream 282405 50455556 ~ 50509791 (+)
LOC110524434 LOC106573111 coding upstream 561131 50226356 ~ 50231065 (+)
LOC118964841 NA coding upstream 708656 50037523 ~ 50184257 (+)
c1h11orf49 cssa16h11orf49 coding downstream 56200 50856580 ~ 50871347 (+)
LOC118964313 NA coding downstream 191603 50991983 ~ 50993119 (+)
LOC110524544 LOC106573154 coding downstream 271316 51071696 ~ 51075445 (+)
LOC118964319 NA coding downstream 354127 51154507 ~ 51155396 (+)
acte1 LOC106561611 coding downstream 363697 51164077 ~ 51170344 (+)
G55101 NA non-coding upstream 12627 50777910 ~ 50779569 (+)
G55058 NA non-coding upstream 17803 50701597 ~ 50774393 (+)
G55070 LOC106573111 non-coding upstream 71973 50718682 ~ 50720223 (+)
G54987 NA non-coding upstream 114084 50677338 ~ 50678112 (+)
G55115 ckap5 non-coding downstream 9766 50810146 ~ 50817448 (+)
G55664 NA non-coding downstream 51901 50852281 ~ 50852604 (+)
G55690 NA non-coding downstream 90384 50890764 ~ 50891884 (+)
G55731 NA non-coding downstream 151353 50951733 ~ 50951962 (+)
G55908 LOC106561613 non-coding downstream 292352 51092732 ~ 51094575 (+)
G53181 NA other upstream 1898284 48893497 ~ 48893912 (+)
G52324 NA other upstream 2408939 48380542 ~ 48383257 (+)
G52080 NA other upstream 2767238 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3533298 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 649442 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 2865835 53632830 ~ 53705421 (+)
G59031 NA other downstream 3187760 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3244469 54044813 ~ 54089850 (+)
G59963 NA other downstream 3920808 54721188 ~ 54721463 (+)

Expression


Co-expression Network