c1h11orf49 (cssa16h11orf49)


Basic Information

Item Value
gene id c1h11orf49
gene name cssa16h11orf49
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50856580 ~ 50871347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979545.1
AAAACCCCAAACATCCGGCACTGTTTCCCATGGAAACGAAGTCTGTGCCGAAACCTACCAAGGCTAGATCGCCACAGTAACATGAACATGCAATGTCAGCTATAAAATTCAAGTAGTGAATacattaaaatataaatatataacctTATAATTACGGACGCAGCAATGTGCACGAAAATGAATCCTGATCGTTTCAACCCTACCCTCTCAGTTGATGAGTACCTTGCTGAGACCAACGTGCTTTTCTACCTGAACGATGCTGTGACCCAGCTTCTGGAGCACAAGGAGGAATACACCCAGTTTGGCATCGTCCGTTACTTTGCAGAATActTTAGCAGTGTGAAGAACGGCAACCACGTACTGTTCAGAGAGTTTGGCTACATCAAGGCCACAGCTCATAACAGGGCCTCCTTCATCCGCGTCCTCTGGAGGTGCTTCCGACAGATCGGGAAAAATGGAGacctcctgGCCATGTTGGAGTACAGCTCCCTTCTGCAGCTCCTCTGTCCAGACTTCCCAGTGGAGATGGTACAACATGCAGCAAGGATAGTGCTAATGGATGATGCCATGGACTGCCTCATGTCCTTCTCGGATTTCCTCTTCTCTTTCCAAATCCAGTTCTACTTCGAAGAGTTCCTGGAGAGTATTGCCGTGATCTACCAGGACCTGCTGTCAGGGAAAAGCCCCAACACTGTGATCGTCCCAACCTCTACCTCAGTGGAACAGCTCCCCCAGGTGGCCACAGAGGAAACTGAGGCCCAGGAAGGAGTGGACTCCTCTGTCTTTTTAGAGTGCATCGAGGTGCTTTGTGAAAGGTTCAAACACAACCATCCTTCTACATCTGCCATTAGAGAGGTTCTGGAGCTAACACAGAGAGTGACATTctatggctttgtgatggctctGGTCAGACATGAGGGCATCAACCAGGACATTGTGTTTGTAATTGAGTTGACCTTGCTAGGTGCCCTACCAAACAAGTCAGAGCTTCTCATTGACCCTGAGATGGACCAGGAAGTGGAGAAACTCATTGCCCAGATCGCTATCAGTCCTACgtccaacagcagcagcagtgtaccAGGACACAAGGAGCCCCCTAGGAAGGCCTCCCCACGCAAGTCCCTTCACCACCGCAAGAGGATCGAGATGGAGAGTGACGGATCCACCGAGGAGACTGACTCCTCAGAGAACTGAGCCTGGACTGAGGCTGACCTCCCAATGGCCCCTTGGCCTCCCATTAACACACTTATACTTCCACTGGCGGACTAAACTTGCCATTAACCCTGTTACAACTATAGTGTCTGTGTTACAACGGAGTAGGCTTATTAGGCTTATTACTCTAGGCAAACTTTCAGTAGAACTGCTATATATTTAGTACTATgagaacctgtctgtctgagaAGTGTGAAAGTTTTATTTTGCGATCTCTGCAGGTTGGAACTGTAATTCAGTGTTCCCTACCTGGTAACACGCATTCTTGTATGTAGTTATTTATGATGTGATATATCTGTATGTAATTTATGATTACCAACCCTGTATCACCTAATATAAAAATTGTTGCTGTGTG
>XM_021604300.2
AACCCCAAACATCCGGCACTGTTTCCCATGGAAACGAAGTCTGTGCCGAAACCTACCAAGGCTAGATCGCCACAGTAACATGAACATGCAATGTCAGCTATAAAATTCAAGTAGTGAATacattaaaatataaatatataacctTATAATTACGGACGCAGCAATGTGCACGAAAATGAATCCTGATCGTTTCAACCCTACCCTCTCAGTTGATGAGTACCTTGCTGAGACCAACGTGCTTTTCTACCTGAACGATGCTGTGACCCAGCTTCTGGAGCACAAGGAGGAATACACCCAGTTTGGCATCGTCCGTTACTTTGCAGAATActTTAGCAGTGTGAAGAACGGCAACCACGTACTGTTCAGAGAGTTTGGCTACATCAAGGCCACAGCTCATAACAGGGCCTCCTTCATCCGCGTCCTCTGGAGGTGCTTCCGACAGATCGGGAAAAATGGAGacctcctgGCCATGTTGGAGTACAGCTCCCTTCTGCAGCTCCTCTGTCCAGACTTCCCAGTGGAGATGGTACAACATGCAGCAAGGATAGTGCTAATGGATGATGCCATGGACTGCCTCATGTCCTTCTCGGATTTCCTCTTCTCTTTCCAAATCCAGTTCTACTTCGAAGAGTTCCTGGAGAGTATTGCCGTGATCTACCAGGACCTGCTGTCAGGGAAAAGCCCCAACACTGTGATCGTCCCAACCTCTACCTCAGTGGAACAGCTCCCCCAGGTGGCCACAGAGGAAACTGAGGCCCAGGAAGGAGTGGACTCCTCTGTCTTTTTAGAGTGCATCGAGGTGCTTTGTGAAAGGTTCAAACACAACCATCCTTCTACATCTGCCATTAGAGAGGTTCTGGAGCTAACACAGAGAGTGACATTctatggctttgtgatggctctGGTCAGACATGAGGGCATCAACCAGGACATTGGTGCCCTACCAAACAAGTCAGAGCTTCTCATTGACCCTGAGATGGACCAGGAAGTGGAGAAACTCATTGCCCAGATCGCTATCAGTCCTACgtccaacagcagcagcagtgtaccAGGACACAAGGAGCCCCCTAGGAAGGCCTCCCCACGCAAGTCCCTTCACCACCGCAAGAGGATCGAGATGGAGAGTGACGGATCCACCGAGGAGACTGACTCCTCAGAGAACTGAGCCTGGACTGAGGCTGACCTCCCAATGGCCCCTTGGCCTCCCATTAACACACTTATACTTCCACTGGCGGACTAAACTTGCCATTAACCCTGTTACAACTATAGTGTCTGTGTTACAACGGAGTAGGCTTATTAGGCTTATTACTCTAGGCAAACTTTCAGTAGAACTGCTATATATTTAGTACTATgagaacctgtctgtctgagaAGTGTGAAAGTTTTATTTTGCGATCTCTGCAGGTTGGAACTGTAATTCAGTGTTCCCTACCTGGTAACACGCATTCTTGTATGTAGTTATTTATGATGTGATATATCTGTATGTAATTTATGATTACCAACCCTGTATCACCTAATATAAAAATTGTTGCTGTGTG

Function

NR:

description
UPF0705 protein C11orf49 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979545.1 False 1567 mRNA 0.47 9 50856580 50871347
XM_021604300.2 True 1538 mRNA 0.48 9 50856582 50871347

Neighbor

gene id symbol gene type direction distance location
LOC110524496 LOC106573105 coding upstream 56200 50792196 ~ 50800380 (+)
LOC110524482 LOC106573107 coding upstream 182405 50600635 ~ 50675495 (+)
LOC110524456 LOC106573106 coding upstream 263729 50530648 ~ 50592851 (+)
LOC110524453 LOC106573109 coding upstream 346789 50455556 ~ 50509791 (+)
LOC110524434 LOC106573111 coding upstream 625515 50226356 ~ 50231065 (+)
LOC118964313 NA coding downstream 120636 50991983 ~ 50993119 (+)
LOC110524544 LOC106573154 coding downstream 200349 51071696 ~ 51075445 (+)
LOC118964319 NA coding downstream 283160 51154507 ~ 51155396 (+)
acte1 LOC106561611 coding downstream 292730 51164077 ~ 51170344 (+)
shank2b LOC106573098 coding downstream 343483 51214830 ~ 51342260 (+)
G55664 NA non-coding upstream 3976 50852281 ~ 50852604 (+)
G55115 ckap5 non-coding upstream 39132 50810146 ~ 50817448 (+)
G55101 NA non-coding upstream 77011 50777910 ~ 50779569 (+)
G55058 NA non-coding upstream 82187 50701597 ~ 50774393 (+)
G55070 LOC106573111 non-coding upstream 136357 50718682 ~ 50720223 (+)
G55690 NA non-coding downstream 19417 50890764 ~ 50891884 (+)
G55731 NA non-coding downstream 80386 50951733 ~ 50951962 (+)
G55908 LOC106561613 non-coding downstream 221385 51092732 ~ 51094575 (+)
G55963 NA non-coding downstream 304287 51175634 ~ 51194020 (+)
G56152 NA non-coding downstream 367983 51239330 ~ 51239638 (+)
LOC118964841 NA other upstream 772584 50037523 ~ 50184257 (+)
G53181 NA other upstream 1962668 48893497 ~ 48893912 (+)
G52324 NA other upstream 2473323 48380542 ~ 48383257 (+)
G52080 NA other upstream 2831622 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3597682 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 578475 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 2794868 53632830 ~ 53705421 (+)
G59031 NA other downstream 3116793 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3173502 54044813 ~ 54089850 (+)
G59963 NA other downstream 3849841 54721188 ~ 54721463 (+)

Expression


Co-expression Network