LOC110532401


Basic Information

Item Value
gene id LOC110532401
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50897530 ~ 50991398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532401
atggagctgggaggggcggtGCACAGGGAGAACGGAGGGGGTTCCagctcgtgcaccatctgtggccgcagaggtcacactgccgTGCAGGTGGACGCTTCCGAgactgggataggagctgtgctctctcagcgctctgGTACGCCACCGACGCTCCGCCTCTGTGcattcttctcgaagaagctcagccctgcggagcgaaactatgacatGGCGGAcggggagctgttggctgtcGAGTGGAACATCACCCGGGTGACctttgggaaggagagagatgaatcCATCATTCAAACGGCCCAGGAGTTTGTAGTGGAGACAATAGTGGGGAATTCTAACACACCCTACAACTTGGACAGGATAATTGAGATGGACAACGGCAGTCCTCCGCTGACCTTCAAGAAGTTCCAGGCCTTAGGGAACAGGCTAGAGCTGCCTAGGAAACCCATGCCCACCATCACACAAGAACAACTGGACAGCTGTCAGACGAAGACCGTAGACAACCACAGACCGACACTACAGCGTCCCCTGTTCTGGAAGAGCTGgGATTCAAGACTCAAGGACTGGACCCAGCGATGTGGAAGGGTGAGGAGTCTGAAGCACTAGAGACTCTACAAACACTTAGACAGAAAAGCCTGGGTGGCTAACTTTCAGTGGACCAGGATCAACATGTGTTCGCTGATCGCCATCTGTCAGGCATTTGAGGAGGTGCTCCTGGATGCAGACGGGAGTATAAACTCAGGCACTGGATGTGGCTCTCCTGCAGTGTCTTTCTTCCAGCAGTTCTTCCACTGCTACTCTCCTGTAGGCTTCGGGACGAAGGAAAGACCCCAGAGGAGACTacatcagGCGCTACATCCTTACGCTAAAGGACTATCCCAACTACTACATCTATGAGCCGTGGAGAGCCCCAGAGCCTGTCCAGAAAGCAGCTTACTGCATCATGAGTGGACTACCCTAAGCCCATGATCAACCACACAGAGGGCAGCAGGCTCAACATAGAAAAGATGAAGAAGGTCTTCCAGCAACTCTCCCACTCGTTCTCTTCTGATTCCACATCATGGTTCTCTCTCACAGTTCCTATTGAGAACTGAAGCAATTTGGCACTTGATTTGGCCCACAACTCCACCACAATCCTCTAGCTAGTCATTTGACTCTTTTTGCATCCTGTTTTTACAAAGCACTTCTCCTGGCTTATTCTATGGACGTAGAGAGAGCCACCTAGTGgttaaatgttgttgttgtttttttctttggatGTCCTGCATTACCATTTTTTTCCGCGTTATGTTTTCATTCTGCCATCAGTCGTTATGGAGGCTATTTCCAGTCAGTGGCTGCCATGGTAACAGTgatgtaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccatcaggtCTCCTGGCCTCTGTGCCCACCACCCAGGAAGAGGCAGTGCCTCCACCAACAGACGACTTTTAGATCAGCAGCAGCACCTGTGTCACCCACACACACGTTGTCTGCCCAGTCCAACACTCTGAAGAGAGGCAGGCCCTCCGAACCATAGAGCACCCAGAAGTGCACCCACCCGAAACACCAGCACACCATCACTGCCCAAGGAGACAACCGGCAACAACAGGAACAGCACAGGAGCAGTGGGAGGAACAATCAGAGCAGCAGGCTGTAGAACAGCCAATGGATCTGCAGTGGCACACGATTATAAGACACTGGGTTGTTCTGTATTCTGAAATGTGAGACATTTTACTGGAACCTCTTCAGAAGTCATCAAATTTCTGTCAAATAAAATCTTTCAATACTCTTTCTGTaggccagggatcatcaactagattcagccatgtGCCAATTTTTTTTCAGTGGATGGttggggggccggaacataattacaaatcatttgtagactgcaaattggcCGCAAAAAGCCCAAAcaaatacagtggcttgcgaaagtattcacctccattggcatttttcctattttgctgccttacaacctggaattaaaatatattttttttggggggggggttgtatcatttgatttacacaacatgcctatgactttgaagatgcaaaatatttttaattGTGAAACAAACGAGAAATAAGGCAAAAAAAGTTAtgcttgagcgtgcataactattcacccctccatcccagtctcaaatctctggaagactgaaacaggtttccttaacgaatttccctgtatt

Function

NR:

description
cryptochrome-2-like isoform X4

GO:

id name namespace
GO:0009266 response to temperature stimulus biological_process
GO:0009416 response to light stimulus biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005667 transcription regulator complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532401 True 2230 mRNA 0.49 8 50897530 50991398

Neighbor

gene id symbol gene type direction distance location
mapk8ip1a LOC106573101 coding downstream 9034 50871475 ~ 50888496 (-)
LOC110532393 ckap5 coding downstream 46862 50808713 ~ 50850668 (-)
LOC110524514 borcs5 coding downstream 112491 50777716 ~ 50792069 (-)
LOC110524488 LOC106573155 coding downstream 145358 50718636 ~ 50752172 (-)
LOC110524445 LOC106573110 coding downstream 522999 50367566 ~ 50374531 (-)
zgc:101566 LOC106573100 coding upstream 101127 51041431 ~ 51144745 (-)
LOC110524590 ccnd1 coding upstream 487648 51479046 ~ 51491719 (-)
LOC110524599 NA coding upstream 682155 51601527 ~ 51674973 (-)
LOC110524618 LOC106573092 coding upstream 859584 51850982 ~ 51886676 (-)
LOC110524646 LOC106573087 coding upstream 1001039 51992437 ~ 52100196 (-)
G55755 NA non-coding downstream 699 50893317 ~ 50896831 (-)
G55753 NA non-coding downstream 5702 50890424 ~ 50891828 (-)
G55665 NA non-coding downstream 45118 50852206 ~ 50852412 (-)
G55628 NA non-coding downstream 83243 50767159 ~ 50814287 (-)
G55298 NA non-coding downstream 152076 50744255 ~ 50745454 (-)
G55840 NA non-coding upstream 2287 50993685 ~ 50993951 (-)
G56122 NA non-coding upstream 215161 51206559 ~ 51206794 (-)
G56148 NA non-coding upstream 240325 51231723 ~ 51233441 (-)
G56270 NA non-coding upstream 261487 51252885 ~ 51253108 (-)
G55627 NA other downstream 130099 50765363 ~ 50767431 (-)
G55408 NA other downstream 485402 50411634 ~ 50412128 (-)
LOC110532382 LOC106573120 other downstream 1911613 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 2593394 48291626 ~ 48304829 (-)
G56372 NA other upstream 409329 51400727 ~ 51412569 (-)
G56764 NA other upstream 755219 51746617 ~ 51747220 (-)
G57742 NA other upstream 1504500 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 2148060 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 2343326 53334724 ~ 53338484 (-)

Expression


Co-expression Network