LOC118964313


Basic Information

Item Value
gene id LOC118964313
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50991983 ~ 50993119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051360.1
GTATCCAAGCAGCAAGCAATACacagaggttattttcctgtttgTCACCAGATATCCCTTCATGAAGGAACACATGAGATCTGGTTATTCTTTGAAAAATACATTCAAGAAGGAGAGTCGCCCACTGATCCATGACCAGAACGTGCAAGAAATGAGGGCCAAGTTTGCTGTGACAGGGTCTGGCAGGATACGCCGCATGTCACTTCCGCCGACTGAGCCGAGACAGCGTGTGCATATAACTAGGCCAGCTGTCGAAAAGGACAGTCTGTGGAGAGGACGAGAGGAGCATCCAGGCTCATCTTCCAAAAATCCCCACAGGGATGACGAAGGTGCTCCCAGATGTGAAACTTTCACAGGAGGAAATGAACAGGATGAGATTTTACAGGAGAACGTTTATGGTGGATGCCCAGACTACTGAAATCCTGGAAAAGTTTCCATCACCTCAGCTTCCAAAAGTGGAAGCAAGTCTACCAGGTGGAGACCAACTGCAAAATCCTAACAGAGCTGGCACCAATGGCAGCTAATATCCTTCAGCTGGCACCAAAGGGGAGATGAAGGATCGCTGCCAAAGGGCAATTGATGACTGTCTGGAGGAATCAG

Function

NR:

description
sterile alpha motif domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051360.1 True 600 mRNA 0.49 3 50991983 50993119

Neighbor

gene id symbol gene type direction distance location
c1h11orf49 cssa16h11orf49 coding upstream 120636 50856580 ~ 50871347 (+)
LOC110524496 LOC106573105 coding upstream 191603 50792196 ~ 50800380 (+)
LOC110524482 LOC106573107 coding upstream 317808 50600635 ~ 50675495 (+)
LOC110524456 LOC106573106 coding upstream 399132 50530648 ~ 50592851 (+)
LOC110524453 LOC106573109 coding upstream 482192 50455556 ~ 50509791 (+)
LOC110524544 LOC106573154 coding downstream 78577 51071696 ~ 51075445 (+)
LOC118964319 NA coding downstream 161388 51154507 ~ 51155396 (+)
acte1 LOC106561611 coding downstream 170958 51164077 ~ 51170344 (+)
shank2b LOC106573098 coding downstream 221711 51214830 ~ 51342260 (+)
LOC110524569 LOC106573096 coding downstream 365169 51358288 ~ 51424303 (+)
G55731 NA non-coding upstream 40021 50951733 ~ 50951962 (+)
G55690 NA non-coding upstream 100099 50890764 ~ 50891884 (+)
G55664 NA non-coding upstream 139379 50852281 ~ 50852604 (+)
G55115 ckap5 non-coding upstream 174535 50810146 ~ 50817448 (+)
G55101 NA non-coding upstream 212414 50777910 ~ 50779569 (+)
G55908 LOC106561613 non-coding downstream 99613 51092732 ~ 51094575 (+)
G55963 NA non-coding downstream 182515 51175634 ~ 51194020 (+)
G56152 NA non-coding downstream 246211 51239330 ~ 51239638 (+)
G56156 NA non-coding downstream 252839 51245958 ~ 51246251 (+)
G56162 NA non-coding downstream 262232 51255351 ~ 51255644 (+)
LOC118964841 NA other upstream 907987 50037523 ~ 50184257 (+)
G53181 NA other upstream 2098071 48893497 ~ 48893912 (+)
G52324 NA other upstream 2608726 48380542 ~ 48383257 (+)
G52080 NA other upstream 2967025 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3733085 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 456703 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 2673096 53632830 ~ 53705421 (+)
G59031 NA other downstream 2995021 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3051730 54044813 ~ 54089850 (+)
G59963 NA other downstream 3728069 54721188 ~ 54721463 (+)

Expression


Co-expression Network