LOC110524544 (LOC106573154)


Basic Information

Item Value
gene id LOC110524544
gene name LOC106573154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51071696 ~ 51075445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604316.2
TCTCTCTCTTTTATGCTAGACCTAATCGATGACTTGCATATCCCCTGTCTTCATACTGATTGTACATCTCAGTATTTAACAAATATATTAGAACATAGTTTCAAATAGCCAAGTATTTTATAGGAAATTATTTAAATATAACTTTAAATACTTAAAATTATTTGAAAATAGTACTCCAATGCATATAAAATAAGTATTTTAAATACAAACATGTATGCATTTGAAGCAAGATCTGCTGACCTCCAACTCCTCCATGTGTATGTGTCTACATCGTAATTTAGGCtgtattctgtttttttttttaaatagtattattattattcgtgACCAAGTCGTGTGCTTTGCCAGGGGCTGTGGGTAGGAGGGGAGATGTAGGGGAGGTTTGGGGTAGTCCAGAACGGGCTCTGGTTGGCACACCTCACACAAAGCCACACCACCAAGCCATAGCCTAGGCTACAACACGCACATTAGTCAAGGCAATCTGGAATATACGGCGGCGGGCTTTGCGAAGGCTGCGGTTGCAGCATCCTTCTCGAATCTATTTTACCCTGTTGGAGTTCAATTGTCTTATTCTGCCTGGCGCTTCGACTAATTTCTCTTATCATGATATTTTCCTTATTTAACACTGACTGATTGTGACTCTTCTATCTGCGAGAACAGTTTCTCTCGATGTGCTACTCAGATGTACGGGGGAAGAAGACAGAGAAGCTGCCCTTCAAGAATGTTTAGTCCTAAAATACCAGATTTTTGTGACGACATTTGAAACCGTTGCATTGCTTTTCTATGGTGTTTTTCACGAGCACCTGCCTTTGCCCACTATGAATTTATGAGGATCTGaacagactgtatcatctatctAAATGAATGAATTCAGCCATGCAATGTTCCTGGAAGGCTGTGATTCTGCTAGCCTTACTGTCCATAGCGATCCAGTACACAGCCATCAGGACATTCACAGCCAAGCCATTCCAGATGTGTCCAGTGACAGCCTCAAACAATCTGAACTGCGGCATGCTGTGGCAGGATGCGGTGGACTCGTCCTTTGACCAGCGGATCTGTGACGACTTCCTTTACTTCACCTCCAACGTCTCCAGAAAAACACACGTTCTCATCCTGGCCACGACCCGCAGCGGCAGCTCCTTCGTGGGTCAGCTGTTCAACCAGCACCAGGATGTGTTTTATCTGTTTGAGCCGCTCTACCACGTCCAGACCACCTTGCTCCCCCGCCTGTcccacagcaggacagcaggcgACACCAGGGTGATGCTGGGGGCCAGCAGGGACCTGCTCCGGAGCCTCTACGACTGTGACCTTtacttcctggagagctacatcAAACCCCAGCCGGCCAAtcacagcacagacaagctgttCCGGAGGGGAGCAAGTAAGGCTCTTTGCTCCCTGCCCGTCTGCGACGCCTTTAGTCCTGGAGAGTTGAACATTGATGAAGGAGAGTGCGTCAGGAGGTGTGGCGGTCTCAACATGACGCTGGCGTCGGACACCTGCCGTGAGAGGCGCCATGTGGCCATCAAGACGGTGAGGATACCGGAGGTGAGTGACCTCAGGGCTCTGGTGGAGGACCCTAGGCTCAACCTCAAGGTGATCCAGCTGGTCAGGGACCCCCGAGGGATCCTGGCCTCCCGCATCGAGACCTTCAGGGACACCTATAGACTCTGGAGGATCTGGAAGGCCACTGGGAGGAGGCCCTACAACCTGGACCTCACCCAGCTCACCATGGTCTGTGAGGACTTCCTGGGTTCTGTGACAACGGGCCTCAGCAGGCCCCCCTGGCTCAAAGGGAGGTACATGTTGGTCAGGTATGAGGACCTGGCCAGGAACCCTCTCCAGAAGACCAAGGAGATCTATGAATACCTGGGTCTGATCATGGACAAGAACGTAGGCGACTGGATCCAGAACAACACCAGGGGAAGCAACGATCTGTCCGCCAAGCATAAATACGGCACTGTTCGGGACTCAGCTGCCAATGCGGAAAGCTGGAGGCTCAAATTGTCTTATGACATGGTTGATTACACACAGACTGTGTGTCAGCAAGTTCTACAGGAGCTTGGTTATAAGACTGTCAGTTCCCCTGAGGAGCTGAAAAATCTGTCTCTGACTCTCATCGAGGACAAAACTTTTTTACCTTTTTTGTAGCAAAGCAAGGTCTATCACGACAACTATTTTTGATATATTTATATTGTTGCCTTAATTTCTTCTCAGATTTGCACTAAACCTCAGAAACCTTGAAGACTCCTGTGGTAAGATTCAAGTCAAGACATTCAGAAGAGCACAAAAAACATAATGTAGGAATGCTCTTTGGAGATATCAGTATCAATGTTTTAGCGATATCGAAGAGACAGTAAATAATGTTAGGTTAATTGACATGAACAAACTTACAGTAAAGCACCATCCTACTTAAGATCCCTGAATGCTGGCTGTTGCATTGACAAAAGCGAATGTTGATATTTGTACATCAAGGAAACTGGACCTACCTTACAACATTGTTAGGGAATGTACCTAATCATACCTTACTGATAAatgctgacgtgtgtgtgtgtgtaggcatatGATAACAACCATGCAATAAAAATGTGAATGTTGAGG

Function

NR:

description
carbohydrate sulfotransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045130 keratan sulfotransferase activity molecular_function

KEGG:

id description
K01022 CHST1; keratan sulfate 6-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604316.2 True 2607 mRNA 0.47 2 51071696 51075445

Neighbor

gene id symbol gene type direction distance location
LOC118964313 NA coding upstream 78577 50991983 ~ 50993119 (+)
c1h11orf49 cssa16h11orf49 coding upstream 200349 50856580 ~ 50871347 (+)
LOC110524496 LOC106573105 coding upstream 271316 50792196 ~ 50800380 (+)
LOC110524482 LOC106573107 coding upstream 397521 50600635 ~ 50675495 (+)
LOC110524456 LOC106573106 coding upstream 478845 50530648 ~ 50592851 (+)
LOC118964319 NA coding downstream 79062 51154507 ~ 51155396 (+)
acte1 LOC106561611 coding downstream 88632 51164077 ~ 51170344 (+)
shank2b LOC106573098 coding downstream 139385 51214830 ~ 51342260 (+)
LOC110524569 LOC106573096 coding downstream 282843 51358288 ~ 51424303 (+)
LOC110524575 fgf3 coding downstream 373908 51449353 ~ 51451460 (+)
G55731 NA non-coding upstream 119734 50951733 ~ 50951962 (+)
G55690 NA non-coding upstream 179812 50890764 ~ 50891884 (+)
G55664 NA non-coding upstream 219092 50852281 ~ 50852604 (+)
G55115 ckap5 non-coding upstream 254248 50810146 ~ 50817448 (+)
G55101 NA non-coding upstream 292127 50777910 ~ 50779569 (+)
G55908 LOC106561613 non-coding downstream 17287 51092732 ~ 51094575 (+)
G55963 NA non-coding downstream 100189 51175634 ~ 51194020 (+)
G56152 NA non-coding downstream 163885 51239330 ~ 51239638 (+)
G56156 NA non-coding downstream 170513 51245958 ~ 51246251 (+)
G56162 NA non-coding downstream 179906 51255351 ~ 51255644 (+)
LOC118964841 NA other upstream 987700 50037523 ~ 50184257 (+)
G53181 NA other upstream 2177784 48893497 ~ 48893912 (+)
G52324 NA other upstream 2688439 48380542 ~ 48383257 (+)
G52080 NA other upstream 3046738 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3812798 47227246 ~ 47260224 (+)
LOC118936380 LOC106581842 other downstream 2590770 53632830 ~ 53705421 (+)
G59031 NA other downstream 2912695 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2969404 54044813 ~ 54089850 (+)
G59963 NA other downstream 3645743 54721188 ~ 54721463 (+)

Expression


Co-expression Network